jgi.p|Nanoce1779_2|576005, mRNA_42 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576005
Unique NamemRNA_42
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length571
Alignment locationscaffold_3:118249..118968 -

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Properties
Property NameValue
TranscriptId576091
TrackFilteredModels2
ProteinId576005
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:118249..118968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576005gene_42Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576005mRNA_42-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_42CDS_42Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_42 ID=mRNA_42|Name=jgi.p|Nanoce1779_2|576005|organism=Nannochloropsis oceanica|type=mRNA|length=571bp
AGAGTAAGGTTCGAAAATGCAGCATCGGTGCATCCTCCGCCCTCCCACGG
CATTCCAACGCATCAAGGCCTTCCTCAGCACCAGCACCAGCCAATCAACA
CCCCCAACCCCACCGAAAAAGGTGCCGCGTCTGTCCCCGCAAGCCGTGAA
GGTAGCCTTGACCATGGACTTGCCTGGCTGGGCGGATGTGAAGGGACGCG
ATGCCTTGGAAAAGACGTACCTCTTTAAAGACTTCGGGGAGGCCTGGGGC
TTCATGTCCCGCGCGGCCCTCTTGGCGGAAAAGCACGACCACCACCCGGA
ATGGTTCAACGTCTACAACAAAGTGCATGTGGTCTTAACCACACATGATG
CTGGGGGGGTCAGTCAGAAGGACGTTGCGATGGGTAAAGCCATGGATGCT
CTGGTAGTTGAGAAGCCGCGCTCGAGCTCCTAGAGAGTTGAGTAGAGAGT
AGTGCCTATGTGCATATGCAGAGTGAAGAGACAATAAAATTATTGTGAAT
AGAATCGAAGGCAAGCAGAAAAGAAGAAAAAAGAAAAGAAGGAGGACAAA
CCCAGAAAAAAATAAGAAGCT
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protein sequence of jgi.p|Nanoce1779_2|576005

>mRNA_42-protein ID=mRNA_42-protein|Name=jgi.p|Nanoce1779_2|576005|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MQHRCILRPPTAFQRIKAFLSTSTSQSTPPTPPKKVPRLSPQAVKVALTM
DLPGWADVKGRDALEKTYLFKDFGEAWGFMSRAALLAEKHDHHPEWFNVY
NKVHVVLTTHDAGGVSQKDVAMGKAMDALVVEKPRSSS*
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mRNA from alignment at scaffold_3:118249..118968-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_42 ID=mRNA_42|Name=jgi.p|Nanoce1779_2|576005|organism=Nannochloropsis oceanica|type=mRNA|length=720bp|location=Sequence derived from alignment at scaffold_3:118249..118968- (Nannochloropsis oceanica)
AGAGTAAGGTTCGAAAATGCAGCATCGGTGCATCCTCCGCCCTCCCACGG
CATTCCAACGCATCAAGGCCTTCCTCAGCACCAGCACCAGCCAATCAACA
CCCCCAACCCCACCGAAAAAGGTGCCGCGTCTGTCCCCGCAAGCCGTGAA
GGTAGCCTTGACCATGGACTTGCCTGGCTGGGCGGATGTGAAGGGACGCG
ATGCCTTGGAAAAGACGTACCTCTTTAAAGACTTCGGGGAGGTAAGAACA
GGAGGGAGGGGTTCAAGATGGATTGTGGACGTTCGAATGGAGTAAGAGGA
TTTGGTTTATACAGGAACCGATCTCTGACTTACTCTGACACCCTCGCCAT
CCTTCCTTCTTCCTCCTTTCCTCCCTCACCTTCGATCCAGGCCTGGGGCT
TCATGTCCCGCGCGGCCCTCTTGGCGGAAAAGCACGACCACCACCCGGAA
TGGTTCAACGTCTACAACAAAGTGCATGTGGTCTTAACCACACATGATGC
TGGGGGGGTCAGTCAGAAGGACGTTGCGATGGGTAAAGCCATGGATGCTC
TGGTAGTTGAGAAGCCGCGCTCGAGCTCCTAGAGAGTTGAGTAGAGAGTA
GTGCCTATGTGCATATGCAGAGTGAAGAGACAATAAAATTATTGTGAATA
GAATCGAAGGCAAGCAGAAAAGAAGAAAAAAGAAAAGAAGGAGGACAAAC
CCAGAAAAAAATAAGAAGCT
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Coding sequence (CDS) from alignment at scaffold_3:118249..118968-

>mRNA_42 ID=mRNA_42|Name=jgi.p|Nanoce1779_2|576005|organism=Nannochloropsis oceanica|type=CDS|length=834bp|location=Sequence derived from alignment at scaffold_3:118249..118968- (Nannochloropsis oceanica)
GCCTGGGGCTTCATGTCCCGCGCGGCCCTCTTGGCGGAAAAGCACGACCA
CCACCCGGAATGGTTCAACGTCTACAACAAAGTGCATGTGGTCTTAACCA
CACATGATGCTGGGGGGGTCAGTCAGAAGGACGTTGCGATGGGTAAAGCC
ATGGATGCTCTGGTAGTTGAGAAGCCGCGCTCGAGCTCCTAGATGCAGCA
TCGGTGCATCCTCCGCCCTCCCACGGCATTCCAACGCATCAAGGCCTTCC
TCAGCACCAGCACCAGCCAATCAACACCCCCAACCCCACCGAAAAAGGTG
CCGCGTCTGTCCCCGCAAGCCGTGAAGGTAGCCTTGACCATGGACTTGCC
TGGCTGGGCGGATGTGAAGGGACGCGATGCCTTGGAAAAGACGTACCTCT
TTAAAGACTTCGGGGAGGCCTGGGGCTTCATGTCCCGCGCGGCCCTCTTG
GCGGAAAAGCACGACCACCACCCGGAATGGTTCAACGTCTACAACAAAGT
GCATGTGGTCTTAACCACACATGATGCTGGGGGGGTCAGTCAGAAGGACG
TTGCGATGGGTAAAGCCATGGATGCTCTGGTAGTTGAGAAGCCGCGCTCG
AGCTCCTAGATGCAGCATCGGTGCATCCTCCGCCCTCCCACGGCATTCCA
ACGCATCAAGGCCTTCCTCAGCACCAGCACCAGCCAATCAACACCCCCAA
CCCCACCGAAAAAGGTGCCGCGTCTGTCCCCGCAAGCCGTGAAGGTAGCC
TTGACCATGGACTTGCCTGGCTGGGCGGATGTGAAGGGACGCGATGCCTT
GGAAAAGACGTACCTCTTTAAAGACTTCGGGGAG
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Synonyms
Publications