jgi.p|Nanoce1779_2|586915, mRNA_4199 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586915
Unique NamemRNA_4199
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length978
Alignment locationscaffold_8:1110975..1112275 +

Link to JBrowse

Properties
Property NameValue
TranscriptId587001
TrackFilteredModels2
ProteinId586915
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:1110975..1112275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586915gene_4199Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586915mRNA_4199-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4199CDS_4199Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4199 ID=mRNA_4199|Name=jgi.p|Nanoce1779_2|586915|organism=Nannochloropsis oceanica|type=mRNA|length=978bp
CAACATTATCCCCAATGCCCAAATATCGGCCGCCGAGCTCCAACCTTCCC
TCCCTCCCCCCCTCCCTTCTTCCCTCCCTCGCACCTCCGGCGCAAGCATG
ACGCTCTCGAGGCCTCTCCTTCCTTCACTTCCTCCTCCGGAGGAAGGAGA
AGGGAAGAGAGCCAGACGGACTTGCCAGGGGAAGGAGGCAGGTCCGCGTT
GGAGGGAGCAGAGGGAGAGGCGGCGGTGGAGGACATTGTTTCCATGGAGG
TAGGCCACGGCGTGAAGGACGGAGAAAAAGACAGCCTTCAGCGTGTCCTC
GTACGGGGAGCAGGGGTGCGCAAGGAGTGAGGGGAGGGAGGAGGAGGACA
AGGAGGAGGACGAGGGGGAGGAGGACGAGGAGAGCGTGGCGGTGTCGTGC
TCTCGTATCCTCTCGTCACCCTTCTCGTTTCGGACGCCTAACGAGGCGAG
GAAAGGTGCCCCTTCCTGCTCCTCTTCCTCTTGTCCTCCTTCAGGCTCCT
CATTCTCCTCCAGCACCAATTCTACAAACGCCAAGTCGAGCCCTCCGTCC
CTCCCTCCCTCCTTCCTTCCGTCCTCCTTGCAGACCATGCCGTCGAGCAC
GCCGAGCAGGCTGGGATGACGCAGGTGAGTGAGGCGCTTGATAAGGCTTT
CCACCTTCTCCAAGTTAAGGTCCACCTTTTCCCCTCCTTTCCCCCTTCCT
TCCTCCTCTTCTCCTTCTTTCCCGAAGAAAGACAAAAGCGCTGGGATGGA
CATGCGCTCCAAGCGCTGCCCTTGCCATTGCTGCCGCCACAGTTGCTGCT
GCTGCTGCTGCTGCTGCGGCTCTTCTTCCCCCACCTCAAGATGAATCCGG
TTCTCCTCCAGATACTCCTCCAGATACTCCTCCAGCATCTCTACCGAAAG
GACTTCTCCTTGAGCCTCCCTGTAAGACAAGGGAAGCAGCAAGAAGTGGT
TAAAATGAGATAGACTCATGGCACCCCC
back to top

protein sequence of jgi.p|Nanoce1779_2|586915

>mRNA_4199-protein ID=mRNA_4199-protein|Name=jgi.p|Nanoce1779_2|586915|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MTQVSEALDKAFHLLQVKVHLFPSFPPSFLLFSFFPEERQKRWDGHALQA
LPLPLLPPQLLLLLLLLRLFFPHLKMNPVLLQILLQILLQHLYRKDFSLS
LPVRQGKQQEVVKMR*
back to top

mRNA from alignment at scaffold_8:1110975..1112275+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4199 ID=mRNA_4199|Name=jgi.p|Nanoce1779_2|586915|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp|location=Sequence derived from alignment at scaffold_8:1110975..1112275+ (Nannochloropsis oceanica)
CAACATTATCCCCAATGCCCAAATATCGGCCGCCGAGCTCCAACCTTCCC
TCCCTCCCCCCCTCCCTTCTTCCCTCCCTCGCACCTCCGGCGCAAGCATG
ACGCTCTCGAGGCCTCTCCTTCCTTCACTTCCTCCTCCGGAGGAAGGAGA
AGGGAAGAGAGCCAGACGGACTTGCCAGGGGAAGGAGGCAGGTCCGCGTT
GGAGGGAGCAGAGGGAGAGGCGGCGGTGGAGGACATTGTTTCCATGGAGG
TAGGCCACGGCGTGAAGGACGGAGAAAAAGACAGCCTTCAGCGTGTCCTC
GTACGGGGAGCAGGGGTGCGCAAGGAGTGAGGGGAGGGAGGAGGAGGACA
AGGAGGAGGACGAGGGGGAGGAGGACGAGGAGAGCGTGGCGGTGTCGTGC
TCTCGTATCCTCTCGTCACCCTTCTCGTTTCGGACGCCTAACGAGGCGAG
GAAAGGTGCCCCTTCCTGCTCCTCTTCCTCTTGTCCTCCTTCAGGCTCCT
CATTCTCCTCCAGCACCAATTCTACAAACGCCAAGTCGAGCCCTCCGTCC
CTCCCTCCCTCCTTCCTTCCGTCCTCCTTGCAGACCATGCCGTCGAGCAC
GCCGAGCAGGCTGGGATGACGCAGGTGAGTGAGGCGCTTGATAAGGCTGG
AGGAAGGGAGGGACGGAGAAATGGATTGAAGGATATGTAGGTGGGTGAGC
GAGGGTGGATGAAGCGAATGAGTCGAGGTGAAAGAAAAAGAAATAGGAGG
GCCAGGGCAAGGGCACCGTTATCGATTTTGGGGGGGGGGGCTTCGTGCCG
TCGAAAGAAAACTCAAGGTACACGCAACCTCCTCACTGGACCACTCATTG
TATGTTTACACACGCACGTGCATGTGTGGTAATAATTTTATGGCCCTCCC
TCCCTGGGCTGCCTCCCACACCCCCTCTCCCACCCCACCCTCGCTTCCGC
ACACCACCTACACACGTACCTTTCCACCTTCTCCAAGTTAAGGTCCACCT
TTTCCCCTCCTTTCCCCCTTCCTTCCTCCTCTTCTCCTTCTTTCCCGAAG
AAAGACAAAAGCGCTGGGATGGACATGCGCTCCAAGCGCTGCCCTTGCCA
TTGCTGCCGCCACAGTTGCTGCTGCTGCTGCTGCTGCTGCGGCTCTTCTT
CCCCCACCTCAAGATGAATCCGGTTCTCCTCCAGATACTCCTCCAGATAC
TCCTCCAGCATCTCTACCGAAAGGACTTCTCCTTGAGCCTCCCTGTAAGA
CAAGGGAAGCAGCAAGAAGTGGTTAAAATGAGATAGACTCATGGCACCCC
C
back to top

Coding sequence (CDS) from alignment at scaffold_8:1110975..1112275+

>mRNA_4199 ID=mRNA_4199|Name=jgi.p|Nanoce1779_2|586915|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at scaffold_8:1110975..1112275+ (Nannochloropsis oceanica)
ATGACGCAGGTGAGTGAGGCGCTTGATAAGGCTTTCCACCTTCTCCAAGT
TAAGGTCCACCTTTTCCCCTCCTTTCCCCCTTCCTTCCTCCTCTTCTCCT
TCTTTCCCGAAGAAAGACAAAAGCGCTGGGATGGACATGCGCTCCAAGCG
CTGCCCTTGCCATTGCTGCCGCCACAGTTGCTGCTGCTGCTGCTGCTGCT
GCGGCTCTTCTTCCCCCACCTCAAGATGAATCCGGTTCTCCTCCAGATAC
TCCTCCAGATACTCCTCCAGCATCTCTACCGAAAGGACTTCTCCTTGAGC
CTCCCTGTAAGACAAGGGAAGCAGCAAGAAGTGGTTAAAATGAGATAGAT
GACGCAGGTGAGTGAGGCGCTTGATAAGGCTTTCCACCTTCTCCAAGTTA
AGGTCCACCTTTTCCCCTCCTTTCCCCCTTCCTTCCTCCTCTTCTCCTTC
TTTCCCGAAGAAAGACAAAAGCGCTGGGATGGACATGCGCTCCAAGCGCT
GCCCTTGCCATTGCTGCCGCCACAGTTGCTGCTGCTGCTGCTGCTGCTGC
GGCTCTTCTTCCCCCACCTCAAGATGAATCCGGTTCTCCTCCAGATACTC
CTCCAGATACTCCTCCAGCATCTCTACCGAAAGGACTTCTCCTTGAGCCT
CCCTGTAAGACAAGGGAAGCAGCAAGAAGTGGTTAAAATGAGATAG
back to top
Synonyms
Publications