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Properties
| Property Name | Value |
| TranscriptId | 665901 |
| Track | FilteredModels2 |
| ProteinId | 665815 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| scaffold_8 | supercontig | scaffold_8:1105479..1108119 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4198 ID=mRNA_4198|Name=jgi.p|Nanoce1779_2|665815|organism=Nannochloropsis oceanica|type=mRNA|length=1502bp TTGTTGCCTCCTAAGGAATCTCGGTTTTCGTCTTCGCCTCCCCTCCCTCC CTCTCACTTACCGGCCTGGACGTGAACAATCTCACGCATGGTTGCTGGGG TGTGGAGGATGAGGTGGGTGGAGTGCTGTGGGTGGGTAAGAGTGTTGGGG GGCGTGCGTGAGGACGAGGGAGAGAAGGCAGGAGGGCACAAGCAACCGCA GAAAATGCTCGATTGGAAGCAAAGGACTCGCTCACTTGTCTTGAGCGAGT CTTGGGCTTGGCCGAGGCGGGACGTTGCTCGCGTTGCAAACAGCAATCAA AGGTCGTCACGCTGCTCAAGGGCGTGTGTTGGTGTGTGTGAAGGGTTTCG ACAGGCACACTGGGCATGCATTTGGGTGGGGCAGGCGTCAAATGGATGCG AAGAAGATGAGGAAGAGGATGGGGGGTGGGAGGGAAGAGGGCGGGAAGAA CATGGGAAGGAAAGGAAGGGGGACAGCTGCATCATTCTTCGCTCACTGCA TTGGACATCGAGGGTAAAGGCAATGTGATAATGTGTTGAGGCGACAGTGA GCCATTCACGAGGCATATCTACCATGTAAACAACATACGAAGCGACCTTC CCTTTCCCTGTTCCCCCCCTCCATTTTTTCCCAACATAGCTCTTCCCTTG CCTGTCTCGCCTTCCTTGCCCATGGAGGCCGCTGTCGACATGGCCATGGC GGCTATCGTCCACGAGGCCAGGAAGCTACGTCAAGGAGGGCCCGCGCAGG AGGGTTTGGACATCCTGGAGAACGATATTAATGGCGCTTTCCGCAACATT AAGATCGCCCTAAAAGAGGAGCTAAACTTCCCGACCATCAAGAATGATGC GGCTTTCTATGAGGCGCACACAAATCGGCTTAAGGCACGTTTGGGTGACA ATATCAAGGCCTTGATCGAAGCCGACATAATGCGTTCCACATGGGTCCGT GTCATGGAGGCTCTCGAACGACCGCACGACCCCATGACACAAGCTCTCCG CGCCTCCATCACCACTGCCGTCTGCTCCGATCCTGCTGTGGCGTATGACC CGAACAATCTCACACACCTGGCGCAGACGCACCTGCAAGAGGCTTACGTC GCGGAGAGGGCAAGGCAGGCAGACACGTTGGAGCAGCACGGCATGTGGAA GGAAATCATGAAGTTTTTAGAACCCGAGCAAGACGAGGATCTGGAGATCG TCGCGCGCCAAGGCCCGGACCCCTTCCAATTTAAGTGCCCCATCACCCAA TCCACCTACGTCGAGCCCATGCGCAACACCGTCTGTGGCCACTCCTTCAG CCACGCAGGCATCATGCAGAGCCTCAACAAGAAGACCGAGATCAAATGTC CGGTGCCGGGCTGCAACAAGCCCGTCAAGCGGAGCACGTTGGAGAAGGAC AAAGAGAAGCAACTGCAGCTTGATCGACACGCGCGGCAGACGCAGGGAGG GGGCGGGACCAGCACACAAAGATACCCGGTGGCGGAAGAGGTCGATTTTT GA back to topprotein sequence of jgi.p|Nanoce1779_2|665815 >mRNA_4198-protein ID=mRNA_4198-protein|Name=jgi.p|Nanoce1779_2|665815|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp MEAAVDMAMAAIVHEARKLRQGGPAQEGLDILENDINGAFRNIKIALKEE LNFPTIKNDAAFYEAHTNRLKARLGDNIKALIEADIMRSTWVRVMEALER PHDPMTQALRASITTAVCSDPAVAYDPNNLTHLAQTHLQEAYVAERARQA DTLEQHGMWKEIMKFLEPEQDEDLEIVARQGPDPFQFKCPITQSTYVEPM RNTVCGHSFSHAGIMQSLNKKTEIKCPVPGCNKPVKRSTLEKDKEKQLQL DRHARQTQGGGGTSTQRYPVAEEVDF* back to topmRNA from alignment at scaffold_8:1105479..1108119+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4198 ID=mRNA_4198|Name=jgi.p|Nanoce1779_2|665815|organism=Nannochloropsis oceanica|type=mRNA|length=2641bp|location=Sequence derived from alignment at scaffold_8:1105479..1108119+ (Nannochloropsis oceanica) TTGTTGCCTCCTAAGGAATCTCGGTTTTCGTCTTCGCCTCCCCTCCCTCC
CTCTCACTTACCGGCCTGGACGTGAACAATCTCACGCATGGTTGCTGGGG
TGTGGAGGATGAGGTGGGTGGAGTGCTGTGGGTGGGTAAGAGTGTTGGGG
GGCGTGCGTGAGGACGAGGGAGAGAAGGCAGGAGGGCACAAGCAACCGCA
GAAAATGCTCGATTGGAAGCAAAGGACTCGCTCACTTGTCTTGAGCGAGT
CTTGGGCTTGGCCGAGGCGGGACGTTGCTCGCGTTGCAAACAGCAATCAA
AGGTCGTCACGCTGCTCAAGGGCGTGTGTTGGTGTGTGTGAAGGGTTTCG
ACAGGCACACTGGGCATGCATTTGGGTGGGGCAGGCGTCAAATGGATGCG
AAGAAGATGAGGAAGAGGATGGGGGGTGGGAGGGAAGAGGGCGGGAAGAA
CATGGGAAGGAAAGGAAGGGGGACAGCTGCATCATTCTTCGCTCACTGCA
TTGGACATCGAGGGTAAAGGCAATGTGATAATGTGTTGAGGCGACAGTGA
GCCATTCACGAGGCATATCTACCATGTAAACAACATACGAAGCGACCTTC
CCTTTCCCTGTTCCCCCCCTCCATTTTTTCCCAACATAGCTCTTCCCTTG
CCTGTCTCGCCTTCCTTGCCCATGGAGGCCGCTGTCGACATGGCCATGGC
GGCTATCGTCCACGAGGCCAGGAAGCTACGTCAAGGAGGGCCCGCGCAGG
AGGGTTTGGACATCCTGGAGAACGATATTAATGTAAGAGCATGGAGGAGA
CTGGGAAGGGGAAGAGAAGGGGATGGGAGGACAAGGCGAGGAACATATCT
TTTGCAAGCGTGGGATACGCCTTTTTGTAGGGATGATGAAGATGCCGACG
TCGCTTCATCTCTTTGATATACGATAAAGGGCGAACTGTATGTGCGAGTG
CGGGGTAGCTGGAAGGGAGGGAGGGAGGGACGTGTCCTGGGGAGCCCTAC
GATTGACGCTCGTGCAAGACGAGGGGCAGGGTTTATGTTTAGTCGAGAGG
ATAGAGAGAGGTGGCTTTGTGCTTAGCCATATGCTTCTGGTACGCTTATC
TATCCTCTCCTTGCCCCCCTTTCCTCCATCCCTCCCTTTCCTCTTCCCCT
AGGGCGCTTTCCGCAACATTAAGATCGCCCTAAAAGAGGAGCTAAACTTC
CCGACCATCAAGAATGATGCGGCTTTCTATGAGGCGCACACAAATCGGCT
TAAGGCACGTTTGGGTGTACGGTAGAATGGAGGGAGGGACGAAAGGAATA
ATGGAGGCTTAACCATCGTTGGAACCACTCATCCTTCCTCCCCTCCCTCT
CCCCCTCTCTCCATTCTTCCCTTCCTTCCTTCCTTCCCCTATGCACAGGA
CAATATCAAGGCCTTGATCGAAGCCGACATAATGCGTTCCACATGGGTCC
GTGTCATGGAGGCTCTCGAACGACCGCACGGTGTGTTTCTCTTCTCCCTC
CCTCTCTTCCTCCTCCCCTTCCTCCCTTCCTTTCTTCCTTTCCCCTTCTT
TTTGCCTTGCCAGGCCTCTCGTCCCGCACCCTAAAATTTCCTGCTTCTCA
ATTTAATTAAAACTGCCCAATCCCCACCCACCCACTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCTCTTCCTCCCTCAGACCCCATGACACAAGCTCTCC
GCGCCTCCATCACCACTGCCGTCTGCTCCGATCCTGCTGTGGCGTATGAC
CCGAACAATCTCACACACCTGGCGCAGACGCACCTGCAAGAGGCTTACGT
AAGGAGAGAGGGAGGGAGGGGAGGACGGAGGGAGGGAGCAGGGTGTTCGG
AATAAGATGTCGTTGGCTTTTCCATAACGGGTATTCATCTTTGCCCGGCC
CTCCCTCCCGCCCTCCCTCCAGGTCGCGGAGAGGGCAAGGCAGGCAGACA
CGTTGGAGCAGCACGGCATGTGGAAGGAAATCATGAAGTTTTTAGAACCC
GAGCAAGACGAGGTATGTCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCTC
CCCTCTATCCCCTGAGGGCCAAGGACTAAATGTGTTCTTCAGGGCCAGCG
AAACAGGAAGACGTGACAGCAAACACATCCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCTTCCCCAGGATCTGGA
GATCGTCGCGCGCCAAGGCCCGGACCCCTTCCAATTTAAGTGCCCCATCA
CCCAATCCACCTACGTCGAGCCCATGCGCAACACCGTCTGTGGCCACTCC
TTCAGCCACGCAGGCATCATGCAGAGCCTCAACAAGAAGACCGAGGTACG
TCACCCTCCTCTCCCTCACCTAACCCTGCCCCTGGAGCAGCTCTCGCGGC
TGATGCAGGCAGATCGGTTGTCAGATCCCTCACCCACCCACCCTCCCTCC
CTCCCTCCCTCTCTTCACTTCCAATGCAGATCAAATGTCCGGTGCCGGGC
TGCAACAAGCCCGTCAAGCGGAGCACGTTGGAGAAGGACAAAGAGAAGCA
ACTGCAGCTTGATCGACACGCGCGGCAGACGCAGGGAGGGGGCGGGACCA
GCACACAAAGATACCCGGTGGCGGAAGAGGTCGATTTTTGA back to topCoding sequence (CDS) from alignment at scaffold_8:1105479..1108119+ >mRNA_4198 ID=mRNA_4198|Name=jgi.p|Nanoce1779_2|665815|organism=Nannochloropsis oceanica|type=CDS|length=5817bp|location=Sequence derived from alignment at scaffold_8:1105479..1108119+ (Nannochloropsis oceanica) ATGGAGGCCGCTGTCGACATGGCCATGGCGGCTATCGTCCACGAGGCCAG GAAGCTACGTCAAGGAGGGCCCGCGCAGGAGGGTTTGGACATCCTGGAGA ACGATATTAATGGCGCTTTCCGCAACATTAAGATCGCCCTAAAAGAGGAG CTAAACTTCCCGACCATCAAGAATGATGCGGCTTTCTATGAGGCGCACAC AAATCGGCTTAAGGCACGTTTGGGTGACAATATCAAGGCCTTGATCGAAG CCGACATAATGCGTTCCACATGGGTCCGTGTCATGGAGGCTCTCGAACGA CCGCACGACCCCATGACACAAGCTCTCCGCGCCTCCATCACCACTGCCGT CTGCTCCGATCCTGCTGTGGCGTATGACCCGAACAATCTCACACACCTGG CGCAGACGCACCTGCAAGAGGCTTACGTCGCGGAGAGGGCAAGGCAGGCA GACACGTTGGAGCAGCACGGCATGTGGAAGGAAATCATGAAGTTTTTAGA ACCCGAGCAAGACGAGGATCTGGAGATCGTCGCGCGCCAAGGCCCGGACC CCTTCCAATTTAAGTGCCCCATCACCCAATCCACCTACGTCGAGCCCATG CGCAACACCGTCTGTGGCCACTCCTTCAGCCACGCAGGCATCATGCAGAG CCTCAACAAGAAGACCGAGATCAAATGTCCGGTGCCGGGCTGCAACAAGC CCGTCAAGCGGAGCACGTTGGAGAAGGACAAAGAGAAGCAACTGCAGCTT GATCGACACGCGCGGCAGACGCAGGGAGGGGGCGGGACCAGCACACAAAG ATACCCGGTGGCGGAAGAGGTCGATTTTTGAATGGAGGCCGCTGTCGACA TGGCCATGGCGGCTATCGTCCACGAGGCCAGGAAGCTACGTCAAGGAGGG CCCGCGCAGGAGGGTTTGGACATCCTGGAGAACGATATTAATGGCGCTTT CCGCAACATTAAGATCGCCCTAAAAGAGGAGCTAAACTTCCCGACCATCA AGAATGATGCGGCTTTCTATGAGGCGCACACAAATCGGCTTAAGGCACGT TTGGGTGACAATATCAAGGCCTTGATCGAAGCCGACATAATGCGTTCCAC ATGGGTCCGTGTCATGGAGGCTCTCGAACGACCGCACGACCCCATGACAC AAGCTCTCCGCGCCTCCATCACCACTGCCGTCTGCTCCGATCCTGCTGTG GCGTATGACCCGAACAATCTCACACACCTGGCGCAGACGCACCTGCAAGA GGCTTACGTCGCGGAGAGGGCAAGGCAGGCAGACACGTTGGAGCAGCACG GCATGTGGAAGGAAATCATGAAGTTTTTAGAACCCGAGCAAGACGAGGAT CTGGAGATCGTCGCGCGCCAAGGCCCGGACCCCTTCCAATTTAAGTGCCC CATCACCCAATCCACCTACGTCGAGCCCATGCGCAACACCGTCTGTGGCC ACTCCTTCAGCCACGCAGGCATCATGCAGAGCCTCAACAAGAAGACCGAG ATCAAATGTCCGGTGCCGGGCTGCAACAAGCCCGTCAAGCGGAGCACGTT GGAGAAGGACAAAGAGAAGCAACTGCAGCTTGATCGACACGCGCGGCAGA CGCAGGGAGGGGGCGGGACCAGCACACAAAGATACCCGGTGGCGGAAGAG GTCGATTTTTGAATGGAGGCCGCTGTCGACATGGCCATGGCGGCTATCGT CCACGAGGCCAGGAAGCTACGTCAAGGAGGGCCCGCGCAGGAGGGTTTGG ACATCCTGGAGAACGATATTAATGGCGCTTTCCGCAACATTAAGATCGCC CTAAAAGAGGAGCTAAACTTCCCGACCATCAAGAATGATGCGGCTTTCTA TGAGGCGCACACAAATCGGCTTAAGGCACGTTTGGGTGACAATATCAAGG CCTTGATCGAAGCCGACATAATGCGTTCCACATGGGTCCGTGTCATGGAG GCTCTCGAACGACCGCACGACCCCATGACACAAGCTCTCCGCGCCTCCAT CACCACTGCCGTCTGCTCCGATCCTGCTGTGGCGTATGACCCGAACAATC TCACACACCTGGCGCAGACGCACCTGCAAGAGGCTTACGTCGCGGAGAGG GCAAGGCAGGCAGACACGTTGGAGCAGCACGGCATGTGGAAGGAAATCAT GAAGTTTTTAGAACCCGAGCAAGACGAGGATCTGGAGATCGTCGCGCGCC AAGGCCCGGACCCCTTCCAATTTAAGTGCCCCATCACCCAATCCACCTAC GTCGAGCCCATGCGCAACACCGTCTGTGGCCACTCCTTCAGCCACGCAGG CATCATGCAGAGCCTCAACAAGAAGACCGAGATCAAATGTCCGGTGCCGG GCTGCAACAAGCCCGTCAAGCGGAGCACGTTGGAGAAGGACAAAGAGAAG CAACTGCAGCTTGATCGACACGCGCGGCAGACGCAGGGAGGGGGCGGGAC CAGCACACAAAGATACCCGGTGGCGGAAGAGGTCGATTTTTGAATGGAGG CCGCTGTCGACATGGCCATGGCGGCTATCGTCCACGAGGCCAGGAAGCTA CGTCAAGGAGGGCCCGCGCAGGAGGGTTTGGACATCCTGGAGAACGATAT TAATGGCGCTTTCCGCAACATTAAGATCGCCCTAAAAGAGGAGCTAAACT TCCCGACCATCAAGAATGATGCGGCTTTCTATGAGGCGCACACAAATCGG CTTAAGGCACGTTTGGGTGACAATATCAAGGCCTTGATCGAAGCCGACAT AATGCGTTCCACATGGGTCCGTGTCATGGAGGCTCTCGAACGACCGCACG ACCCCATGACACAAGCTCTCCGCGCCTCCATCACCACTGCCGTCTGCTCC GATCCTGCTGTGGCGTATGACCCGAACAATCTCACACACCTGGCGCAGAC GCACCTGCAAGAGGCTTACGTCGCGGAGAGGGCAAGGCAGGCAGACACGT TGGAGCAGCACGGCATGTGGAAGGAAATCATGAAGTTTTTAGAACCCGAG CAAGACGAGGATCTGGAGATCGTCGCGCGCCAAGGCCCGGACCCCTTCCA ATTTAAGTGCCCCATCACCCAATCCACCTACGTCGAGCCCATGCGCAACA CCGTCTGTGGCCACTCCTTCAGCCACGCAGGCATCATGCAGAGCCTCAAC AAGAAGACCGAGATCAAATGTCCGGTGCCGGGCTGCAACAAGCCCGTCAA GCGGAGCACGTTGGAGAAGGACAAAGAGAAGCAACTGCAGCTTGATCGAC ACGCGCGGCAGACGCAGGGAGGGGGCGGGACCAGCACACAAAGATACCCG GTGGCGGAAGAGGTCGATTTTTGAATGGAGGCCGCTGTCGACATGGCCAT GGCGGCTATCGTCCACGAGGCCAGGAAGCTACGTCAAGGAGGGCCCGCGC AGGAGGGTTTGGACATCCTGGAGAACGATATTAATGGCGCTTTCCGCAAC ATTAAGATCGCCCTAAAAGAGGAGCTAAACTTCCCGACCATCAAGAATGA TGCGGCTTTCTATGAGGCGCACACAAATCGGCTTAAGGCACGTTTGGGTG ACAATATCAAGGCCTTGATCGAAGCCGACATAATGCGTTCCACATGGGTC CGTGTCATGGAGGCTCTCGAACGACCGCACGACCCCATGACACAAGCTCT CCGCGCCTCCATCACCACTGCCGTCTGCTCCGATCCTGCTGTGGCGTATG ACCCGAACAATCTCACACACCTGGCGCAGACGCACCTGCAAGAGGCTTAC GTCGCGGAGAGGGCAAGGCAGGCAGACACGTTGGAGCAGCACGGCATGTG GAAGGAAATCATGAAGTTTTTAGAACCCGAGCAAGACGAGGATCTGGAGA TCGTCGCGCGCCAAGGCCCGGACCCCTTCCAATTTAAGTGCCCCATCACC CAATCCACCTACGTCGAGCCCATGCGCAACACCGTCTGTGGCCACTCCTT CAGCCACGCAGGCATCATGCAGAGCCTCAACAAGAAGACCGAGATCAAAT GTCCGGTGCCGGGCTGCAACAAGCCCGTCAAGCGGAGCACGTTGGAGAAG GACAAAGAGAAGCAACTGCAGCTTGATCGACACGCGCGGCAGACGCAGGG AGGGGGCGGGACCAGCACACAAAGATACCCGGTGGCGGAAGAGGTCGATT TTTGAATGGAGGCCGCTGTCGACATGGCCATGGCGGCTATCGTCCACGAG GCCAGGAAGCTACGTCAAGGAGGGCCCGCGCAGGAGGGTTTGGACATCCT GGAGAACGATATTAATGGCGCTTTCCGCAACATTAAGATCGCCCTAAAAG AGGAGCTAAACTTCCCGACCATCAAGAATGATGCGGCTTTCTATGAGGCG CACACAAATCGGCTTAAGGCACGTTTGGGTGACAATATCAAGGCCTTGAT CGAAGCCGACATAATGCGTTCCACATGGGTCCGTGTCATGGAGGCTCTCG AACGACCGCACGACCCCATGACACAAGCTCTCCGCGCCTCCATCACCACT GCCGTCTGCTCCGATCCTGCTGTGGCGTATGACCCGAACAATCTCACACA CCTGGCGCAGACGCACCTGCAAGAGGCTTACGTCGCGGAGAGGGCAAGGC AGGCAGACACGTTGGAGCAGCACGGCATGTGGAAGGAAATCATGAAGTTT TTAGAACCCGAGCAAGACGAGGATCTGGAGATCGTCGCGCGCCAAGGCCC GGACCCCTTCCAATTTAAGTGCCCCATCACCCAATCCACCTACGTCGAGC CCATGCGCAACACCGTCTGTGGCCACTCCTTCAGCCACGCAGGCATCATG CAGAGCCTCAACAAGAAGACCGAGATCAAATGTCCGGTGCCGGGCTGCAA CAAGCCCGTCAAGCGGAGCACGTTGGAGAAGGACAAAGAGAAGCAACTGC AGCTTGATCGACACGCGCGGCAGACGCAGGGAGGGGGCGGGACCAGCACA CAAAGATACCCGGTGGCGGAAGAGGTCGATTTTTGAATGGAGGCCGCTGT CGACATGGCCATGGCGGCTATCGTCCACGAGGCCAGGAAGCTACGTCAAG GAGGGCCCGCGCAGGAGGGTTTGGACATCCTGGAGAACGATATTAATGGC GCTTTCCGCAACATTAAGATCGCCCTAAAAGAGGAGCTAAACTTCCCGAC CATCAAGAATGATGCGGCTTTCTATGAGGCGCACACAAATCGGCTTAAGG CACGTTTGGGTGACAATATCAAGGCCTTGATCGAAGCCGACATAATGCGT TCCACATGGGTCCGTGTCATGGAGGCTCTCGAACGACCGCACGACCCCAT GACACAAGCTCTCCGCGCCTCCATCACCACTGCCGTCTGCTCCGATCCTG CTGTGGCGTATGACCCGAACAATCTCACACACCTGGCGCAGACGCACCTG CAAGAGGCTTACGTCGCGGAGAGGGCAAGGCAGGCAGACACGTTGGAGCA GCACGGCATGTGGAAGGAAATCATGAAGTTTTTAGAACCCGAGCAAGACG AGGATCTGGAGATCGTCGCGCGCCAAGGCCCGGACCCCTTCCAATTTAAG TGCCCCATCACCCAATCCACCTACGTCGAGCCCATGCGCAACACCGTCTG TGGCCACTCCTTCAGCCACGCAGGCATCATGCAGAGCCTCAACAAGAAGA CCGAGATCAAATGTCCGGTGCCGGGCTGCAACAAGCCCGTCAAGCGGAGC ACGTTGGAGAAGGACAAAGAGAAGCAACTGCAGCTTGATCGACACGCGCG GCAGACGCAGGGAGGGGGCGGGACCAGCACACAAAGATACCCGGTGGCGG AAGAGGTCGATTTTTGA back to top
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