jgi.p|Nanoce1779_2|586906, mRNA_4196 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586906
Unique NamemRNA_4196
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length346
Alignment locationscaffold_8:1099870..1100400 +

Link to JBrowse

Properties
Property NameValue
TranscriptId586992
TrackFilteredModels2
ProteinId586906
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:1099870..1100400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586906gene_4196Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586906mRNA_4196-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4196CDS_4196Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4196 ID=mRNA_4196|Name=jgi.p|Nanoce1779_2|586906|organism=Nannochloropsis oceanica|type=mRNA|length=346bp
CTCTTTCTCCCTCGTGCGTCCTCTCCCCCCTTATGTGATAGGTGATCGGC
ATCATTGCCGGTGGCGGGCGCACGGACAAGCCCCTGCTCAAGGCCGGCCG
CGCCTACCACAAGTATCGCGTGAAGCGTAACGAGTGGCCTAAGGTGCGAG
GTGTGGCAATGAACCCCGTGGAGCATCCTCACGGTGGCGGTAACCACCAG
CATATTGGACACCCGTCTACTGTCAAGCGCGATGCGCCCGCAGGGAAGAA
GGCGGGCTTGGTGGCTGCCCGCCGCACGGGTCGTCTGCGCGGCATTAAGA
AGGGAGCCGAGAAGGACACGTAAAGGGAGGGACGGAGGGAGGGACG
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protein sequence of jgi.p|Nanoce1779_2|586906

>mRNA_4196-protein ID=mRNA_4196-protein|Name=jgi.p|Nanoce1779_2|586906|organism=Nannochloropsis oceanica|type=polypeptide|length=55bp
MNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKAGLVAARRTGRLRGIKKGA
EKDT*
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mRNA from alignment at scaffold_8:1099870..1100400+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4196 ID=mRNA_4196|Name=jgi.p|Nanoce1779_2|586906|organism=Nannochloropsis oceanica|type=mRNA|length=531bp|location=Sequence derived from alignment at scaffold_8:1099870..1100400+ (Nannochloropsis oceanica)
CTCTTTCTCCCTCGTGCGTCCTCTCCCCCCTTATGTGATAGGTGATCGGC
ATCATTGCCGGTGGCGGGCGCACGGACAAGCCCCTGCTCAAGGCCGGCCG
CGCCTACCACAAGTATCGCGTGAAGCGTAACGAGTGGCCTAAGGTATGTG
GCTCTTTCGTCTTTCGTAGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCTCTCTCTTCCAGGTTTTTTCCCACGACTTCCATTTTCCGAAGC
TACCGCTCGTGCCATATTGTACACCTGCTCATCAGCTTTTCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTTGTACAGGTGCGAGGTGTGGCAATGAACC
CCGTGGAGCATCCTCACGGTGGCGGTAACCACCAGCATATTGGACACCCG
TCTACTGTCAAGCGCGATGCGCCCGCAGGGAAGAAGGCGGGCTTGGTGGC
TGCCCGCCGCACGGGTCGTCTGCGCGGCATTAAGAAGGGAGCCGAGAAGG
ACACGTAAAGGGAGGGACGGAGGGAGGGACG
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Coding sequence (CDS) from alignment at scaffold_8:1099870..1100400+

>mRNA_4196 ID=mRNA_4196|Name=jgi.p|Nanoce1779_2|586906|organism=Nannochloropsis oceanica|type=CDS|length=165bp|location=Sequence derived from alignment at scaffold_8:1099870..1100400+ (Nannochloropsis oceanica)
ATGAACCCCGTGGAGCATCCTCACGGTGGCGGTAACCACCAGCATATTGG
ACACCCGTCTACTGTCAAGCGCGATGCGCCCGCAGGGAAGAAGGCGGGCT
TGGTGGCTGCCCGCCGCACGGGTCGTCTGCGCGGCATTAAGAAGGGAGCC
GAGAAGGACACGTAA
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Synonyms
Publications