jgi.p|Nanoce1779_2|427007, mRNA_4194 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|427007
Unique NamemRNA_4194
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1006
Alignment locationscaffold_8:1095921..1097787 -

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Properties
Property NameValue
TranscriptId427093
TrackFilteredModels2
ProteinId427007
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:1095921..1097787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|427007gene_4194Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|427007mRNA_4194-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4194CDS_4194Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4194 ID=mRNA_4194|Name=jgi.p|Nanoce1779_2|427007|organism=Nannochloropsis oceanica|type=mRNA|length=1006bp
CGTAGAACAAAACGCTGTCGGCTCCTTTTTGACTTCGATTTCTGACGACA
CAATGAGCCCGCCAGCCCTTTGGCGCGGTAGATCAACACGATTGCATCAA
CGCAACGCACCCACACCCGTCTTCATTGTTGTCCTAAAACCTCTCCTCCC
CTCCCCATCTCCATCATCCACAGGCACGTATGCCATGACGACCCTTCCAG
CCGCAGCGGCAGGGGCCGCAGCAGGAGGAGGGATGGAATCAGAGGAAGCG
CCTGAGTACCCTCCTCCGCCGGCCTACTTCCGCATGTTCGCGCCTCCCAC
CAAAGCTCACGAGGACGAGGACGAAGACGAGGACGAGGAGGGCGTAGGAA
CAGGCAAGGGAGAAGGAGAGGCAGGGGAGGAAGACAATTTTCCGTTGCCT
CCACCAGCAATTCCATTGAGGGGCACGCCTGTCTCAGTGTTTGGCTTTCC
GGTGGCGCATTTGGACGAGGAAGGGTACGACCCGATAATCCCTCCCGAGG
CCCGCCTCTACTCGAGCCGGGAGGTGGTGGTGCACGACGAGGAGGAGGGC
GAGGGGGAGGGCGGGCGGGAGAGAGGGAGGGCGGTGATGGTGGAGATGGA
CTATAGAGGAGAGTTGGAGAAGCTGCGGAAAATGCTGGCGGAGAAGGTGT
TAGGAGTGATGGAGGGGTTGAGGACGGGGAAGAGGGAGGGATCTGACTGC
AATGCCCTGCTGGGGGAAATGGGCCAGGTCATCGACAACATGTACGACGT
CTTGAGCGCCTACCGACAGCAGCAGGTAGGGAGGGAGGGAGGGAGGGTTG
AAAACTGGGATTGATTGGTTGTCGCATCGCACCTAGCATGGAAGGAGTGA
TGACGGGGCGGAAGGAGGGTGGGTATGGATATGGGAGGGATGGGAGGCGG
AGGGGGTCTTTGTGAGGGAGGGACGGAACGAGGGAGGGCTTCTATGTGCG
AAGGACACTGGGGTCAGCCAGAGACGAGCGAAAGCGATGAAAAACTCATC
TTTTCC
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protein sequence of jgi.p|Nanoce1779_2|427007

>mRNA_4194-protein ID=mRNA_4194-protein|Name=jgi.p|Nanoce1779_2|427007|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MSPPALWRGRSTRLHQRNAPTPVFIVVLKPLLPSPSPSSTGTYAMTTLPA
AAAGAAAGGGMESEEAPEYPPPPAYFRMFAPPTKAHEDEDEDEDEEGVGT
GKGEGEAGEEDNFPLPPPAIPLRGTPVSVFGFPVAHLDEEGYDPIIPPEA
RLYSSREVVVHDEEEGEGEGGRERGRAVMVEMDYRGELEKLRKMLAEKVL
GVMEGLRTGKREGSDCNALLGEMGQVIDNMYDVLSAYRQQQVGREGGRVE
NWD*
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mRNA from alignment at scaffold_8:1095921..1097787-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4194 ID=mRNA_4194|Name=jgi.p|Nanoce1779_2|427007|organism=Nannochloropsis oceanica|type=mRNA|length=1867bp|location=Sequence derived from alignment at scaffold_8:1095921..1097787- (Nannochloropsis oceanica)
CGTAGAACAAAACGCTGTCGGCTCCTTTTTGACTTCGATTTCTGACGACA
CAATGAGCCCGCCAGCCCTTTGGCGCGGTAGATCAACACGATTGCATCAA
CGCAACGCACCCACACCCGTCTTCATTGTTGTCCTAAAACCTCTCCTCCC
CTCCCCATCTCCATCATCCACAGGCACGTATGCCATGACGACCCTTCCAG
CCGCAGCGGCAGGGGCCGCAGCAGGAGGAGGGATGGAATCAGAGGAAGCG
CCTGAGTACCCTCCTCCGCCGGCCTACTTCCGCATGTTCGCGCCTCCCAC
CAAAGCTCACGAGGACGAGGACGAAGACGAGGACGAGGAGGGCGTAGGAA
CAGGCAAGGGAGAAGGAGAGGCAGGGGAGGAAGACAATTTTCCGTTGCCT
CCACCAGCAATTCCATTGAGGGGCACGCCTGTCTCAGTGTTTGGCTTTCC
GGTGGCGCATTTGGACGAGGTACGGGCTTGGGGGAGGGAGGGAAGGAGGA
AGAGAGGGAGGGAGGGAAGGAGGAAGAATGGGAGGGAGGAAGGGAGGGAG
GGTAGAGGTGACTTGGCGAGGTGATGGACGGGTTAATTTTCGTAGAGGAT
TTGGAATGTATCCTCCTTACTTTTATTTTAGCAGGTCCGTCGCGGGTGGG
AAAGGGAGGGAGGGAGGGAGGGAGGGAGTAGGGGGTGAACGAGGAGGACT
AGTGCAAGTGCCTACCAAGCACCAGGCGGTGGAAAGGAGCAGGTAATGGG
AAGGATGGGAAGACCTTGTGAACGTCACTGATGATTTAAATATCGATTAG
TCTTTCTGAAAATTCATGCGGGCGCTTGGCTTGCTCCAGGCGCCCGGATC
TGTAGAGAAACACTTCATTTGCCTGAGACGTCTCAGTTTGATCTATTTGG
GGTCTTGATTTATCCTAATTCGATTTACAGCGAACCACATCTGTGAGGTT
ACCATTCATGCACTAGATCCCGACATTCGACTCTGCGGCTATATGATCGT
TCTTCCTCCTTCCCTCCCTCCCACCCTGTGTAGTATCATCCAAAACCGGA
AACCCTCGCCATTTCAAAGCGAGGGGATATCGACCCATTTTCTCTGAGTT
AGCCTCCCTCCTTCCCTACCGTCTTCCCTCCCCCCTTCCTTTCCCAGGAA
GGGTACGACCCGATAATCCCTCCCGAGGCCCGCCTCTACTCGAGCCGGGA
GGTGGTGGTGCACGACGAGGAGGAGGGCGAGGGGGAGGGCGGGCGGGAGA
GAGGGAGGGCGGTGATGGTGGAGATGGACTATAGAGGAGAGTTGGAGAAG
CTGCGGAAAATGCTGGCGGAGAAGGTGTTAGGAGTGATGGAGGGGTTGAG
GACGGGGAAGAGGGAGGGATCTGACTGGTACGTCCGCTTGGGGGGATGAA
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGGAAGGATGGATGA
CAAGACAGCCATCCGCTCGCATCACCGTCCTCTCTTCCGTCCTCTCTTCC
ATCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTAGCAATGCCCTGCTGGGGGAAATGGGCCAGGTCATCGACAAC
ATGTACGACGTCTTGAGCGCCTACCGACAGCAGCAGGTAGGGAGGGAGGG
AGGGAGGGTTGAAAACTGGGATTGATTGGTTGTCGCATCGCACCTAGCAT
GGAAGGAGTGATGACGGGGCGGAAGGAGGGTGGGTATGGATATGGGAGGG
ATGGGAGGCGGAGGGGGTCTTTGTGAGGGAGGGACGGAACGAGGGAGGGC
TTCTATGTGCGAAGGACACTGGGGTCAGCCAGAGACGAGCGAAAGCGATG
AAAAACTCATCTTTTCC
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Coding sequence (CDS) from alignment at scaffold_8:1095921..1097787-

>mRNA_4194 ID=mRNA_4194|Name=jgi.p|Nanoce1779_2|427007|organism=Nannochloropsis oceanica|type=CDS|length=2286bp|location=Sequence derived from alignment at scaffold_8:1095921..1097787- (Nannochloropsis oceanica)
CAATGCCCTGCTGGGGGAAATGGGCCAGGTCATCGACAACATGTACGACG
TCTTGAGCGCCTACCGACAGCAGCAGGTAGGGAGGGAGGGAGGGAGGGTT
GAAAACTGGGATTGAGAAGGGTACGACCCGATAATCCCTCCCGAGGCCCG
CCTCTACTCGAGCCGGGAGGTGGTGGTGCACGACGAGGAGGAGGGCGAGG
GGGAGGGCGGGCGGGAGAGAGGGAGGGCGGTGATGGTGGAGATGGACTAT
AGAGGAGAGTTGGAGAAGCTGCGGAAAATGCTGGCGGAGAAGGTGTTAGG
AGTGATGGAGGGGTTGAGGACGGGGAAGAGGGAGGGATCTGACTGATGAG
CCCGCCAGCCCTTTGGCGCGGTAGATCAACACGATTGCATCAACGCAACG
CACCCACACCCGTCTTCATTGTTGTCCTAAAACCTCTCCTCCCCTCCCCA
TCTCCATCATCCACAGGCACGTATGCCATGACGACCCTTCCAGCCGCAGC
GGCAGGGGCCGCAGCAGGAGGAGGGATGGAATCAGAGGAAGCGCCTGAGT
ACCCTCCTCCGCCGGCCTACTTCCGCATGTTCGCGCCTCCCACCAAAGCT
CACGAGGACGAGGACGAAGACGAGGACGAGGAGGGCGTAGGAACAGGCAA
GGGAGAAGGAGAGGCAGGGGAGGAAGACAATTTTCCGTTGCCTCCACCAG
CAATTCCATTGAGGGGCACGCCTGTCTCAGTGTTTGGCTTTCCGGTGGCG
CATTTGGACGAGCAATGCCCTGCTGGGGGAAATGGGCCAGGTCATCGACA
ACATGTACGACGTCTTGAGCGCCTACCGACAGCAGCAGGTAGGGAGGGAG
GGAGGGAGGGTTGAAAACTGGGATTGAGAAGGGTACGACCCGATAATCCC
TCCCGAGGCCCGCCTCTACTCGAGCCGGGAGGTGGTGGTGCACGACGAGG
AGGAGGGCGAGGGGGAGGGCGGGCGGGAGAGAGGGAGGGCGGTGATGGTG
GAGATGGACTATAGAGGAGAGTTGGAGAAGCTGCGGAAAATGCTGGCGGA
GAAGGTGTTAGGAGTGATGGAGGGGTTGAGGACGGGGAAGAGGGAGGGAT
CTGACTGATGAGCCCGCCAGCCCTTTGGCGCGGTAGATCAACACGATTGC
ATCAACGCAACGCACCCACACCCGTCTTCATTGTTGTCCTAAAACCTCTC
CTCCCCTCCCCATCTCCATCATCCACAGGCACGTATGCCATGACGACCCT
TCCAGCCGCAGCGGCAGGGGCCGCAGCAGGAGGAGGGATGGAATCAGAGG
AAGCGCCTGAGTACCCTCCTCCGCCGGCCTACTTCCGCATGTTCGCGCCT
CCCACCAAAGCTCACGAGGACGAGGACGAAGACGAGGACGAGGAGGGCGT
AGGAACAGGCAAGGGAGAAGGAGAGGCAGGGGAGGAAGACAATTTTCCGT
TGCCTCCACCAGCAATTCCATTGAGGGGCACGCCTGTCTCAGTGTTTGGC
TTTCCGGTGGCGCATTTGGACGAGCAATGCCCTGCTGGGGGAAATGGGCC
AGGTCATCGACAACATGTACGACGTCTTGAGCGCCTACCGACAGCAGCAG
GTAGGGAGGGAGGGAGGGAGGGTTGAAAACTGGGATTGAGAAGGGTACGA
CCCGATAATCCCTCCCGAGGCCCGCCTCTACTCGAGCCGGGAGGTGGTGG
TGCACGACGAGGAGGAGGGCGAGGGGGAGGGCGGGCGGGAGAGAGGGAGG
GCGGTGATGGTGGAGATGGACTATAGAGGAGAGTTGGAGAAGCTGCGGAA
AATGCTGGCGGAGAAGGTGTTAGGAGTGATGGAGGGGTTGAGGACGGGGA
AGAGGGAGGGATCTGACTGATGAGCCCGCCAGCCCTTTGGCGCGGTAGAT
CAACACGATTGCATCAACGCAACGCACCCACACCCGTCTTCATTGTTGTC
CTAAAACCTCTCCTCCCCTCCCCATCTCCATCATCCACAGGCACGTATGC
CATGACGACCCTTCCAGCCGCAGCGGCAGGGGCCGCAGCAGGAGGAGGGA
TGGAATCAGAGGAAGCGCCTGAGTACCCTCCTCCGCCGGCCTACTTCCGC
ATGTTCGCGCCTCCCACCAAAGCTCACGAGGACGAGGACGAAGACGAGGA
CGAGGAGGGCGTAGGAACAGGCAAGGGAGAAGGAGAGGCAGGGGAGGAAG
ACAATTTTCCGTTGCCTCCACCAGCAATTCCATTGAGGGGCACGCCTGTC
TCAGTGTTTGGCTTTCCGGTGGCGCATTTGGACGAG
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Synonyms
Publications