jgi.p|Nanoce1779_2|586887, mRNA_4191 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586887
Unique Name	mRNA_4191
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	734
Alignment location	scaffold_8:1087503..1088449 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586973
Track	FilteredModels2
ProteinId	586887

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:1087503..1088449 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586887	gene_4191	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586887	mRNA_4191-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4191	CDS_4191	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:1087503..1088449+
coding sequence from alignment at scaffold_8:1087503..1088449+

mRNA sequence

>mRNA_4191 ID=mRNA_4191|Name=jgi.p|Nanoce1779_2|586887|organism=Nannochloropsis oceanica|type=mRNA|length=734bp
CCTCGAACTCATGGATGACCTCCCACATGCACTCTCAACCTTCCTTCTCT
CCCTCCCTCCCTCCCTCTCACCTTCCTTAGACGCAGCTCCCCCGGGGACA
TGGTAATCCGACACCTCTTCATCTTCTCACTCACTTCCGACGCCAAGTCC
CACGTCTTCCTCTTCGGTTTATGACTACCCTCTCCACCTCCTGTCTTTCC
TTGTCTCCCCAGTCGCTCATCTCCCCCTCCTCCTTCTCCTGCTCCTCCTT
CTCCTTCCCCCCTCTCTCCATATCGGGCCCTAGGAGGCATGCTACGGGAC
GGGTACATATTGATTACTTGGATAGGTGGTGGCAATGGTTGCTGCTGTTG
CTGCTGTTCTTGTCGTTGTTGTTGGCGTTCTTAATGGTGATGCAAGTAAT
TCTGCAGCAGCTGTTGCTTCTGCTGCTGCTGCTGTTTTTGCAGCTGCTGC
TGTTGGTAGTTTTGGTATGCCTGTGACTGATACTTGTGCTGGAATTGTTC
GTGTGATGGAAGGGGATGGTAGTGTTGCTGTTGAAGTGGCAGGAAGGCGC
CGTGGTGAAATTCGGTGGGTGGGCGCAGAGGCGGCAGAGGGAGGGGAGGT
GGAGGGTGGGAGGGAGAGGGAGGGGGGAAAAGGGTCTGCCGCTGGAAGAG
AATGATTGCAAAACGGGCTACCAGGCACCGAGCATACGCTAGACAGGCGT
ACACGTGCTGGTGTACGTTCGAATAGACTCCCTG

protein sequence of jgi.p|Nanoce1779_2|586887

>mRNA_4191-protein ID=mRNA_4191-protein|Name=jgi.p|Nanoce1779_2|586887|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MVAAVAAVLVVVVGVLNGDASNSAAAVASAAAAVFAAAAVGSFGMPVTDT
CAGIVRVMEGDGSVAVEVAGRRRGEIRWVGAEAAEGGEVEGGREREGGKG
SAAGRE*

mRNA from alignment at scaffold_8:1087503..1088449+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4191 ID=mRNA_4191|Name=jgi.p|Nanoce1779_2|586887|organism=Nannochloropsis oceanica|type=mRNA|length=947bp|location=Sequence derived from alignment at scaffold_8:1087503..1088449+ (Nannochloropsis oceanica)
CCTCGAACTCATGGATGACCTCCCACATGCACTCTCAACCTTCCTTCTCT
CCCTCCCTCCCTCCCTCTCACCTTCCTTAGACGCAGCTCCCCCGGGGACA
TGGTAATCCGACACCTCTTCATCTTCTCACTCACTTCCGACGCCAAGTCC
CACGTCTTCCTCTTCGGTTTATGACTACCCTCTCCACCTCCTGTCTTTCC
TTGTCTCCCCAGTCGCTCATCTCCCCCTCCTCCTTCTCCTGCTCCTCCTT
CTCCTTCCCCCCTCTCTCCATATCGGGCCCTAGGAGGCATGCTACGGGAC
GGGTACATATTGATTACTTGGATAGGTGGTGGCAATGGTTGCTGCTGTTG
CTGCTGTTCTTGTCGTTGTTGTTGGCGTTCTTAATGGTGATGCAAGTAAT
TCTGCAGCAGCTGTTGCTTCTGCTGCTGCTGCTGTTTTTGCAGCTGCTGC
TGTTGGTAGTTTTGGTATGCCTGCGTGTCGGGGTGATTCGGGGGAGGGAG
GGAAAGAAAGGGTAGACAGACGAAGGGGAAAAGTGTGGATGGCACATGGA
AAGACATAAGACACAGATCGAAAAAAGGGAATGGCTTCATCCGATTACGG
CGCTGCTCAAAGGTGTCATGCATGCCATAGGCGTGGGTTAGAAGGAATGA
GAGACGGAGGGATTTAGGGGCGCCTCCACGCACCTGTGACTGATACTTGT
GCTGGAATTGTTCGTGTGATGGAAGGGGATGGTAGTGTTGCTGTTGAAGT
GGCAGGAAGGCGCCGTGGTGAAATTCGGTGGGTGGGCGCAGAGGCGGCAG
AGGGAGGGGAGGTGGAGGGTGGGAGGGAGAGGGAGGGGGGAAAAGGGTCT
GCCGCTGGAAGAGAATGATTGCAAAACGGGCTACCAGGCACCGAGCATAC
GCTAGACAGGCGTACACGTGCTGGTGTACGTTCGAATAGACTCCCTG

Coding sequence (CDS) from alignment at scaffold_8:1087503..1088449+

>mRNA_4191 ID=mRNA_4191|Name=jgi.p|Nanoce1779_2|586887|organism=Nannochloropsis oceanica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_8:1087503..1088449+ (Nannochloropsis oceanica)
ATGGTTGCTGCTGTTGCTGCTGTTCTTGTCGTTGTTGTTGGCGTTCTTAA
TGGTGATGCAAGTAATTCTGCAGCAGCTGTTGCTTCTGCTGCTGCTGCTG
TTTTTGCAGCTGCTGCTGTTGGTAGTTTTGGTATGCCTGTGACTGATACT
TGTGCTGGAATTGTTCGTGTGATGGAAGGGGATGGTAGTGTTGCTGTTGA
AGTGGCAGGAAGGCGCCGTGGTGAAATTCGGTGGGTGGGCGCAGAGGCGG
CAGAGGGAGGGGAGGTGGAGGGTGGGAGGGAGAGGGAGGGGGGAAAAGGG
TCTGCCGCTGGAAGAGAATGAATGGTTGCTGCTGTTGCTGCTGTTCTTGT
CGTTGTTGTTGGCGTTCTTAATGGTGATGCAAGTAATTCTGCAGCAGCTG
TTGCTTCTGCTGCTGCTGCTGTTTTTGCAGCTGCTGCTGTTGGTAGTTTT
GGTATGCCTGTGACTGATACTTGTGCTGGAATTGTTCGTGTGATGGAAGG
GGATGGTAGTGTTGCTGTTGAAGTGGCAGGAAGGCGCCGTGGTGAAATTC
GGTGGGTGGGCGCAGAGGCGGCAGAGGGAGGGGAGGTGGAGGGTGGGAGG
GAGAGGGAGGGGGGAAAAGGGTCTGCCGCTGGAAGAGAATGA

Synonyms

Publications