jgi.p|Nanoce1779_2|586881, mRNA_4190 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586881
Unique NamemRNA_4190
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length314
Alignment locationscaffold_8:1085553..1085866 +

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Properties
Property NameValue
TranscriptId586967
TrackFilteredModels2
ProteinId586881
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:1085553..1085866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586881gene_4190Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586881mRNA_4190-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4190CDS_4190Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4190 ID=mRNA_4190|Name=jgi.p|Nanoce1779_2|586881|organism=Nannochloropsis oceanica|type=mRNA|length=314bp
GCATGCGCTGCAATCCTGATCCCTCCATTCCTTCCTCCGTCCCTCCGTCT
CTCTCTCTCTCTCCCTCCCTTCCTTCCTCCCACCCTACTCATGTAATTCT
ACTCTCCACAATACTATCTTTCTGTGCCTGTTTCTCTGTGTCTCTTTGTA
AATTACATTCAATTTTCTCTCTCTTTCTTCCTCTTTTGTCGCCGCTGCTA
TTCCTGTTCCATCTGCTACTACTCTCGTCGCTGCTGATGCTGCTGCTGTT
GCTGCCTTCCCACGCCTCCTCTTCTTCACAACACCACCCACAATAGCACA
CTCAAACTTATACT
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protein sequence of jgi.p|Nanoce1779_2|586881

>mRNA_4190-protein ID=mRNA_4190-protein|Name=jgi.p|Nanoce1779_2|586881|organism=Nannochloropsis oceanica|type=polypeptide|length=98bp
MRCNPDPSIPSSVPPSLSLSPSLPSSHPTHVILLSTILSFCACFSVSLCK
LHSIFSLFLPLLSPLLFLFHLLLLSSLLMLLLLLPSHASSSSQHHPQ*
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mRNA from alignment at scaffold_8:1085553..1085866+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4190 ID=mRNA_4190|Name=jgi.p|Nanoce1779_2|586881|organism=Nannochloropsis oceanica|type=mRNA|length=314bp|location=Sequence derived from alignment at scaffold_8:1085553..1085866+ (Nannochloropsis oceanica)
GCATGCGCTGCAATCCTGATCCCTCCATTCCTTCCTCCGTCCCTCCGTCT
CTCTCTCTCTCTCCCTCCCTTCCTTCCTCCCACCCTACTCATGTAATTCT
ACTCTCCACAATACTATCTTTCTGTGCCTGTTTCTCTGTGTCTCTTTGTA
AATTACATTCAATTTTCTCTCTCTTTCTTCCTCTTTTGTCGCCGCTGCTA
TTCCTGTTCCATCTGCTACTACTCTCGTCGCTGCTGATGCTGCTGCTGTT
GCTGCCTTCCCACGCCTCCTCTTCTTCACAACACCACCCACAATAGCACA
CTCAAACTTATACT
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Coding sequence (CDS) from alignment at scaffold_8:1085553..1085866+

>mRNA_4190 ID=mRNA_4190|Name=jgi.p|Nanoce1779_2|586881|organism=Nannochloropsis oceanica|type=CDS|length=294bp|location=Sequence derived from alignment at scaffold_8:1085553..1085866+ (Nannochloropsis oceanica)
ATGCGCTGCAATCCTGATCCCTCCATTCCTTCCTCCGTCCCTCCGTCTCT
CTCTCTCTCTCCCTCCCTTCCTTCCTCCCACCCTACTCATGTAATTCTAC
TCTCCACAATACTATCTTTCTGTGCCTGTTTCTCTGTGTCTCTTTGTAAA
TTACATTCAATTTTCTCTCTCTTTCTTCCTCTTTTGTCGCCGCTGCTATT
CCTGTTCCATCTGCTACTACTCTCGTCGCTGCTGATGCTGCTGCTGTTGC
TGCCTTCCCACGCCTCCTCTTCTTCACAACACCACCCACAATAG
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Synonyms
Publications