jgi.p|Nanoce1779_2|426687, mRNA_4184 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|426687
Unique NamemRNA_4184
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length735
Alignment locationscaffold_8:1064980..1065928 -

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Properties
Property NameValue
TranscriptId426773
TrackFilteredModels2
ProteinId426687
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:1064980..1065928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|426687gene_4184Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|426687mRNA_4184-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4184CDS_4184Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4184 ID=mRNA_4184|Name=jgi.p|Nanoce1779_2|426687|organism=Nannochloropsis oceanica|type=mRNA|length=735bp
CCACGTTCACACGCACATACAAAAAAAGCACTACAGGCTGAGATCAAGAT
GGCGGCCATGCCATTGATGGGAAGAGGCGGGTCCCTACGCTTCTTCCTTC
TCCTACTTTTAGGCGTCGGCACCACCCTTGCCTTTGTCCTCCCCCCGCCA
TCCTCGCGCCAACCCAGCACGAGCATTATGAATACACCCTCCACCGCCGC
TGTCCTGTATGCGGCACGCAAGAAGAAGGGCGGTAGTGGGGCGGGTGAAG
GCTTTGGACAAACCCAAAAGAAGAAGGAGGCGGCACGAGCGCCGGTACCA
GCACCATCAGCCCCTGCCGGAGGGGAGGAAGTGAAGGAGAAGGGGTCGGA
GGACGCGAAAACGGCCGCGAAAGAGAACTTCAAGGCCAAACTAATGGAGG
TGGGCAGCAGTTTGCAGAACTTGGCCAGCCAAGTTGATGCACGGGCGGGG
GATGGCGAGGACCCCTACGACCCAGCTTTTGTAGCCGAGCAAAAACGCCT
CCGTGCCGAGATAGACTTCGACCGTCCCTATGCCCGCGAACGGCCTAGGA
ATTGGGATTACATTACGGGGTTACCTGTCCCCAAAATCGTACGGATTGAG
GATGTGAGTCGAAGAAGGGGGGGGGAGGGAGAGAGGAAGGGAGGGTGAGA
GGGAGGAGAGCATTGCAGTATATGCGTGCTATCTCGATTCATGCTCATCA
ATCCTTCTCCTCTCCTCCTTCTGGCCCTCCCTATC
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protein sequence of jgi.p|Nanoce1779_2|426687

>mRNA_4184-protein ID=mRNA_4184-protein|Name=jgi.p|Nanoce1779_2|426687|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MAAMPLMGRGGSLRFFLLLLLGVGTTLAFVLPPPSSRQPSTSIMNTPSTA
AVLYAARKKKGGSGAGEGFGQTQKKKEAARAPVPAPSAPAGGEEVKEKGS
EDAKTAAKENFKAKLMEVGSSLQNLASQVDARAGDGEDPYDPAFVAEQKR
LRAEIDFDRPYARERPRNWDYITGLPVPKIVRIEDVSRRRGGEGERKGG*
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mRNA from alignment at scaffold_8:1064980..1065928-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4184 ID=mRNA_4184|Name=jgi.p|Nanoce1779_2|426687|organism=Nannochloropsis oceanica|type=mRNA|length=949bp|location=Sequence derived from alignment at scaffold_8:1064980..1065928- (Nannochloropsis oceanica)
CCACGTTCACACGCACATACAAAAAAAGCACTACAGGCTGAGATCAAGAT
GGCGGCCATGCCATTGATGGGAAGAGGCGGGTCCCTACGCTTCTTCCTTC
TCCTACTTTTAGGCGTCGGCACCACCCTTGCCTTTGTCCTCCCCCCGCCA
TCCTCGCGCCAACCCAGCACGAGCATTATGAATACACCCTCCACCGCCGC
TGTCCTGTATGCGGCACGCAAGAAGAAGGGCGGTAGTGGGGCGGGTGAAG
GCTTTGGACAAACCCAAAAGAAGAAGGAGGCGGCACGAGCGCCGGTACCA
GCACCATCAGCCCCTGCCGGAGGGGAGGAAGTGAAGGAGAAGGGGTCGGA
GGACGCGAAAACGGCCGCGAAAGAGAACTTCAAGGCCAAACTAATGGAGG
TGGGCAGCAGTTTGCAGAACTTGGCCAGCCAAGTTGATGCACGGGCGGGG
GATGGCGAGGTGGGTTGAGAAGAGGGAGGAAGCTATGAAGGGAGGAAACG
GAGGGGAGGGAGGGGAAGGGAGATGGGTGGGCTTCATACCCATCGATGCC
GTATGCCTACTGACGATTTGAGCTGCATACATTTTCTCGCATCTATAGAC
ATAATATATGTATACTTCTGCGCCCTAACATACTCTCTCCCTCCCTCCCT
CCCTCCTTCCCTCTCTCCCTCAGGACCCCTACGACCCAGCTTTTGTAGCC
GAGCAAAAACGCCTCCGTGCCGAGATAGACTTCGACCGTCCCTATGCCCG
CGAACGGCCTAGGAATTGGGATTACATTACGGGGTTACCTGTCCCCAAAA
TCGTACGGATTGAGGATGTGAGTCGAAGAAGGGGGGGGGAGGGAGAGAGG
AAGGGAGGGTGAGAGGGAGGAGAGCATTGCAGTATATGCGTGCTATCTCG
ATTCATGCTCATCAATCCTTCTCCTCTCCTCCTTCTGGCCCTCCCTATC
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Coding sequence (CDS) from alignment at scaffold_8:1064980..1065928-

>mRNA_4184 ID=mRNA_4184|Name=jgi.p|Nanoce1779_2|426687|organism=Nannochloropsis oceanica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_8:1064980..1065928- (Nannochloropsis oceanica)
GACCCCTACGACCCAGCTTTTGTAGCCGAGCAAAAACGCCTCCGTGCCGA
GATAGACTTCGACCGTCCCTATGCCCGCGAACGGCCTAGGAATTGGGATT
ACATTACGGGGTTACCTGTCCCCAAAATCGTACGGATTGAGGATGTGAGT
CGAAGAAGGGGGGGGGAGGGAGAGAGGAAGGGAGGGTGAATGGCGGCCAT
GCCATTGATGGGAAGAGGCGGGTCCCTACGCTTCTTCCTTCTCCTACTTT
TAGGCGTCGGCACCACCCTTGCCTTTGTCCTCCCCCCGCCATCCTCGCGC
CAACCCAGCACGAGCATTATGAATACACCCTCCACCGCCGCTGTCCTGTA
TGCGGCACGCAAGAAGAAGGGCGGTAGTGGGGCGGGTGAAGGCTTTGGAC
AAACCCAAAAGAAGAAGGAGGCGGCACGAGCGCCGGTACCAGCACCATCA
GCCCCTGCCGGAGGGGAGGAAGTGAAGGAGAAGGGGTCGGAGGACGCGAA
AACGGCCGCGAAAGAGAACTTCAAGGCCAAACTAATGGAGGTGGGCAGCA
GTTTGCAGAACTTGGCCAGCCAAGTTGATGCACGGGCGGGGGATGGCGAG
GACCCCTACGACCCAGCTTTTGTAGCCGAGCAAAAACGCCTCCGTGCCGA
GATAGACTTCGACCGTCCCTATGCCCGCGAACGGCCTAGGAATTGGGATT
ACATTACGGGGTTACCTGTCCCCAAAATCGTACGGATTGAGGATGTGAGT
CGAAGAAGGGGGGGGGAGGGAGAGAGGAAGGGAGGGTGAATGGCGGCCAT
GCCATTGATGGGAAGAGGCGGGTCCCTACGCTTCTTCCTTCTCCTACTTT
TAGGCGTCGGCACCACCCTTGCCTTTGTCCTCCCCCCGCCATCCTCGCGC
CAACCCAGCACGAGCATTATGAATACACCCTCCACCGCCGCTGTCCTGTA
TGCGGCACGCAAGAAGAAGGGCGGTAGTGGGGCGGGTGAAGGCTTTGGAC
AAACCCAAAAGAAGAAGGAGGCGGCACGAGCGCCGGTACCAGCACCATCA
GCCCCTGCCGGAGGGGAGGAAGTGAAGGAGAAGGGGTCGGAGGACGCGAA
AACGGCCGCGAAAGAGAACTTCAAGGCCAAACTAATGGAGGTGGGCAGCA
GTTTGCAGAACTTGGCCAGCCAAGTTGATGCACGGGCGGGGGATGGCGAG
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Synonyms
Publications