jgi.p|Nanoce1779_2|426583, mRNA_4182 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|426583
Unique Name	mRNA_4182
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1435
Alignment location	scaffold_8:1053948..1055800 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	426669
Track	FilteredModels2
ProteinId	426583

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:1053948..1055800 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|426583	gene_4182	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|426583	mRNA_4182-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4182	CDS_4182	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:1053948..1055800-
coding sequence from alignment at scaffold_8:1053948..1055800-

mRNA sequence

>mRNA_4182 ID=mRNA_4182|Name=jgi.p|Nanoce1779_2|426583|organism=Nannochloropsis oceanica|type=mRNA|length=1435bp
GCCGTGTCGGTTGCTTTCATCAGTTGCGGTACAGTTGTCAACATGCTATA
CAGACGGGCCAATTGTGGTGTTGCGCATGTAACACGGTGACCGATGACCG
TGTTCCGTAACTGTCTGCTGCCGTGCTGGGGAATTAGGTGCGGGGACTCG
GAGGACAACGAGATCGGCAGGAGGTTGGGAGGCGGTAGCCAAGGCATCTA
TCTCACCACACCTCACGTGCACATGCCCATAATTACATACAGCTTCGACT
TTCCGTCGCCACCTACCCCCTGCATGACCAGGAGGGTGCCGGTCCTTTTC
GTCCCCATCTTGCTCTCCACGTCGCAGCAGACCTTGCCCCGCTCCTCGGT
CCTCTACCCCCGCCACACACCCACTGACCAAGTAGTCCGTCTCGCCTCGT
CCTCCCTCTCTTCACCGTCCCCACGTCCACGACACTACACCCAGCTTCGT
CTGCATCCTCGTCTATTCACTTCTGGAATCATGGCGTCTTCCGCCAACCC
TTCCTCCCCCTCCCCCTTCTCTCCTGACCCCTCCATCAAGGCAGAAAAGG
CCGCCCTCCGCAAGTGCATCTCAGCCCGTCTTCGTGCCTTGGACGACACA
CATGTCACGGCAGAAGCAAAACGCCTCTTTCCCCGACTATTGGAGCTTGA
GGCAGTGAAGCGTAGTGAGTGCTTGAGTCTGTATTTGTCTATGCCGAGCA
AGGAAGTGCCGACATTCCCGATATTGCTTACGGTACTGATGGAGGGAGGG
AAGCAGGAAGGAGACGCCTCAAGCACCGGCGGAGAGGCAAGGCGAAAGAA
AAAGGTGTACGTCCCCAAGGTCATCGGTCCGGCCTCAGCCGACATGGTCA
TGCTCCCCCTCTCCTCCCCCCAAGACATTGCATCCTTCCCCCTCTCCAAA
TGGGGCATCCCCGAGCCCGTCCTCCCTCCCTCTCCCCTTCCCTCCCTCCC
TCCCCTCGATTTGGTTATTGTACCTGGCGTAGCTTTCGATGCCAATTGCA
ACCGGCTGGGGCACGGCAAAGGGTACTATGACTGCTTCCTTTCCCGGCTC
CAGGCAAGCCATGCGCGGGAAGGTCGTCAAAGGCCCTATACGGTAGGCTT
AGCATTGGACGAGCAGATTGTTGAGTCAGTGCCTCTCGACGCGTTTGACC
TGCCTATAGACGCGGTGGTGACGCCTAGTAAGGTTTTTTTGAGGTAGTAG
AGAGTGACGGAAGGAGGGAGGGAGCAAAGGAGGAAGTGAAGGAGGATGGT
TTTGGTTCTTATAAATCAAATGTTTGCATTGTGAGTCGGTGTTATCTCTC
AAATTTTTCTGCCACATGGGGTGACACCGAGCGATTTATTTGAGGGAGGG
AGGGAGGGGGGGAGAGAGGGAGGGAGGGAGGAAAAGAGGAAGAGAGGGAA
AGGGGAAAGCAACCAATATGACTTAAATTTAAAAA

protein sequence of jgi.p|Nanoce1779_2|426583

>mRNA_4182-protein ID=mRNA_4182-protein|Name=jgi.p|Nanoce1779_2|426583|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MTVFRNCLLPCWGIRCGDSEDNEIGRRLGGGSQGIYLTTPHVHMPIITYS
FDFPSPPTPCMTRRVPVLFVPILLSTSQQTLPRSSVLYPRHTPTDQVVRL
ASSSLSSPSPRPRHYTQLRLHPRLFTSGIMASSANPSSPSPFSPDPSIKA
EKAALRKCISARLRALDDTHVTAEAKRLFPRLLELEAVKRSECLSLYLSM
PSKEVPTFPILLTVLMEGGKQEGDASSTGGEARRKKKVYVPKVIGPASAD
MVMLPLSSPQDIASFPLSKWGIPEPVLPPSPLPSLPPLDLVIVPGVAFDA
NCNRLGHGKGYYDCFLSRLQASHAREGRQRPYTVGLALDEQIVESVPLDA
FDLPIDAVVTPSKVFLR*

mRNA from alignment at scaffold_8:1053948..1055800-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4182 ID=mRNA_4182|Name=jgi.p|Nanoce1779_2|426583|organism=Nannochloropsis oceanica|type=mRNA|length=1853bp|location=Sequence derived from alignment at scaffold_8:1053948..1055800- (Nannochloropsis oceanica)
GCCGTGTCGGTTGCTTTCATCAGTTGCGGTACAGTTGTCAACATGCTATA
CAGACGGGCCAATTGTGGTGTTGCGCATGTAACACGGTGACCGATGACCG
TGTTCCGTAACTGTCTGCTGCCGTGCTGGGGAATTAGGTGCGGGGACTCG
GAGGACAACGAGATCGGCAGGAGGTTGGGAGGCGGTAGCCAAGGCATCTA
TCTCACCACACCTCACGTGCACATGCCCATAATTACATACAGCTTCGACT
TTCCGTCGCCACCTACCCCCTGCATGACCAGGAGGGTGCCGGTCCTTTTC
GTCCCCATCTTGCTCTCCACGTCGCAGCAGACCTTGCCCCGCTCCTCGGT
CCTCTACCCCCGCCACACACCCACTGACCAAGTAGTCCGTCTCGCCTCGT
CCTCCCTCTCTTCACCGTCCCCACGTCCACGACACTACACCCAGCTTCGT
CTGCATCCTCGTCTATTCACTTCTGGAATCATGGCGTCTTCCGCCAACCC
TTCCTCCCCCTCCCCCTTCTCTCCTGACCCCTCCATCAAGGCAGAAAAGG
CCGCCCTCCGCAAGTGCATCTCAGCCCGTCTTCGTGCCTTGGACGACACA
CATGTCACGGCAGAAGCAAAACGCCTCTTTCCCCGACTATTGGAGCTTGA
GGCAGTGAAGCGTAGTGAGTGCTTGAGTCTGTATTTGTCTATGCCGAGCA
AGGAAGTGCCGACATTCCCGATATTGCTTACGGTACTGATGGAGGGAGGG
AAGCAGGAAGGAGACGCCTCAAGCACCGGCGGAGAGGCAAGGCGAAAGAA
AAAGGTGTACGTCCCCAAGGTAGGATGGGTTATAGGGGTGGGGGAAGAGG
GAAGGAAAGAAAATACGCGGCTGCCACCCTCCTGAAGTGGCGGGGGAGGA
GGGCGGGCTGCGCAGGTCTCGTTTCGCGATAGCTCCCAAATCCTCACAGA
CTCGTCTTCCTGATGAAGTTCCGCAACATCCAACCCCTCTTCCCCCTCCT
TTACATACGCACATAGGTCATCGGTCCGGCCTCAGCCGACATGGTCATGC
TCCCCCTCTCCTCCCCCCAAGACATTGCATCCTTCCCCCTCTCCAAATGG
GGCATCCCCGAGCCCGTCCTCCCTCCCTCTCCCCTTCCCTCCCTCCCTCC
CCTCGATTTGGTTATTGTACCTGGCGTAGCTTTCGATGCCAATTGCAACC
GGCTGGGGCACGGCAAAGGCAAGCAAACCATCCCTCCCTTCTCCTTCCCT
CCCTCCCTTCCTTCCTTCCTTCCTCCCTCCCTCCATTTCTCCCTACCTAC
CTCTTTCCACTCCCCCACTGTCCTATCACACCTTTGTCACAGTCTTGATC
CATAAAGATGCCCTCAATAATTCTTCAGTATAAAGTTCGGTCGTCTCTTA
ACCTTCCCTCCCTTTTTCCCTCCCTCCCTCTCTTCGCAGGGTACTATGAC
TGCTTCCTTTCCCGGCTCCAGGCAAGCCATGCGCGGGAAGGTCGTCAAAG
GCCCTATACGGTAGGCTTAGCATTGGACGAGCAGATTGTTGAGTCAGTGC
CTCTCGACGCGTTTGACCTGCCTATAGACGCGGTGGTGACGCCTAGTAAG
GTTTTTTTGAGGTAGTAGAGAGTGACGGAAGGAGGGAGGGAGCAAAGGAG
GAAGTGAAGGAGGATGGTTTTGGTTCTTATAAATCAAATGTTTGCATTGT
GAGTCGGTGTTATCTCTCAAATTTTTCTGCCACATGGGGTGACACCGAGC
GATTTATTTGAGGGAGGGAGGGAGGGGGGGAGAGAGGGAGGGAGGGAGGA
AAAGAGGAAGAGAGGGAAAGGGGAAAGCAACCAATATGACTTAAATTTAA
AAA

Coding sequence (CDS) from alignment at scaffold_8:1053948..1055800-

>mRNA_4182 ID=mRNA_4182|Name=jgi.p|Nanoce1779_2|426583|organism=Nannochloropsis oceanica|type=CDS|length=3312bp|location=Sequence derived from alignment at scaffold_8:1053948..1055800- (Nannochloropsis oceanica)
GGTACTATGACTGCTTCCTTTCCCGGCTCCAGGCAAGCCATGCGCGGGAA
GGTCGTCAAAGGCCCTATACGGTAGGCTTAGCATTGGACGAGCAGATTGT
TGAGTCAGTGCCTCTCGACGCGTTTGACCTGCCTATAGACGCGGTGGTGA
CGCCTAGTAAGGTTTTTTTGAGGTAGGTCATCGGTCCGGCCTCAGCCGAC
ATGGTCATGCTCCCCCTCTCCTCCCCCCAAGACATTGCATCCTTCCCCCT
CTCCAAATGGGGCATCCCCGAGCCCGTCCTCCCTCCCTCTCCCCTTCCCT
CCCTCCCTCCCCTCGATTTGGTTATTGTACCTGGCGTAGCTTTCGATGCC
AATTGCAACCGGCTGGGGCACGGCAAAGATGACCGTGTTCCGTAACTGTC
TGCTGCCGTGCTGGGGAATTAGGTGCGGGGACTCGGAGGACAACGAGATC
GGCAGGAGGTTGGGAGGCGGTAGCCAAGGCATCTATCTCACCACACCTCA
CGTGCACATGCCCATAATTACATACAGCTTCGACTTTCCGTCGCCACCTA
CCCCCTGCATGACCAGGAGGGTGCCGGTCCTTTTCGTCCCCATCTTGCTC
TCCACGTCGCAGCAGACCTTGCCCCGCTCCTCGGTCCTCTACCCCCGCCA
CACACCCACTGACCAAGTAGTCCGTCTCGCCTCGTCCTCCCTCTCTTCAC
CGTCCCCACGTCCACGACACTACACCCAGCTTCGTCTGCATCCTCGTCTA
TTCACTTCTGGAATCATGGCGTCTTCCGCCAACCCTTCCTCCCCCTCCCC
CTTCTCTCCTGACCCCTCCATCAAGGCAGAAAAGGCCGCCCTCCGCAAGT
GCATCTCAGCCCGTCTTCGTGCCTTGGACGACACACATGTCACGGCAGAA
GCAAAACGCCTCTTTCCCCGACTATTGGAGCTTGAGGCAGTGAAGCGTAG
TGAGTGCTTGAGTCTGTATTTGTCTATGCCGAGCAAGGAAGTGCCGACAT
TCCCGATATTGCTTACGGTACTGATGGAGGGAGGGAAGCAGGAAGGAGAC
GCCTCAAGCACCGGCGGAGAGGCAAGGCGAAAGAAAAAGGTGTACGTCCC
CAAGGGTACTATGACTGCTTCCTTTCCCGGCTCCAGGCAAGCCATGCGCG
GGAAGGTCGTCAAAGGCCCTATACGGTAGGCTTAGCATTGGACGAGCAGA
TTGTTGAGTCAGTGCCTCTCGACGCGTTTGACCTGCCTATAGACGCGGTG
GTGACGCCTAGTAAGGTTTTTTTGAGGTAGGTCATCGGTCCGGCCTCAGC
CGACATGGTCATGCTCCCCCTCTCCTCCCCCCAAGACATTGCATCCTTCC
CCCTCTCCAAATGGGGCATCCCCGAGCCCGTCCTCCCTCCCTCTCCCCTT
CCCTCCCTCCCTCCCCTCGATTTGGTTATTGTACCTGGCGTAGCTTTCGA
TGCCAATTGCAACCGGCTGGGGCACGGCAAAGATGACCGTGTTCCGTAAC
TGTCTGCTGCCGTGCTGGGGAATTAGGTGCGGGGACTCGGAGGACAACGA
GATCGGCAGGAGGTTGGGAGGCGGTAGCCAAGGCATCTATCTCACCACAC
CTCACGTGCACATGCCCATAATTACATACAGCTTCGACTTTCCGTCGCCA
CCTACCCCCTGCATGACCAGGAGGGTGCCGGTCCTTTTCGTCCCCATCTT
GCTCTCCACGTCGCAGCAGACCTTGCCCCGCTCCTCGGTCCTCTACCCCC
GCCACACACCCACTGACCAAGTAGTCCGTCTCGCCTCGTCCTCCCTCTCT
TCACCGTCCCCACGTCCACGACACTACACCCAGCTTCGTCTGCATCCTCG
TCTATTCACTTCTGGAATCATGGCGTCTTCCGCCAACCCTTCCTCCCCCT
CCCCCTTCTCTCCTGACCCCTCCATCAAGGCAGAAAAGGCCGCCCTCCGC
AAGTGCATCTCAGCCCGTCTTCGTGCCTTGGACGACACACATGTCACGGC
AGAAGCAAAACGCCTCTTTCCCCGACTATTGGAGCTTGAGGCAGTGAAGC
GTAGTGAGTGCTTGAGTCTGTATTTGTCTATGCCGAGCAAGGAAGTGCCG
ACATTCCCGATATTGCTTACGGTACTGATGGAGGGAGGGAAGCAGGAAGG
AGACGCCTCAAGCACCGGCGGAGAGGCAAGGCGAAAGAAAAAGGTGTACG
TCCCCAAGGGTACTATGACTGCTTCCTTTCCCGGCTCCAGGCAAGCCATG
CGCGGGAAGGTCGTCAAAGGCCCTATACGGTAGGCTTAGCATTGGACGAG
CAGATTGTTGAGTCAGTGCCTCTCGACGCGTTTGACCTGCCTATAGACGC
GGTGGTGACGCCTAGTAAGGTTTTTTTGAGGTAGGTCATCGGTCCGGCCT
CAGCCGACATGGTCATGCTCCCCCTCTCCTCCCCCCAAGACATTGCATCC
TTCCCCCTCTCCAAATGGGGCATCCCCGAGCCCGTCCTCCCTCCCTCTCC
CCTTCCCTCCCTCCCTCCCCTCGATTTGGTTATTGTACCTGGCGTAGCTT
TCGATGCCAATTGCAACCGGCTGGGGCACGGCAAAGATGACCGTGTTCCG
TAACTGTCTGCTGCCGTGCTGGGGAATTAGGTGCGGGGACTCGGAGGACA
ACGAGATCGGCAGGAGGTTGGGAGGCGGTAGCCAAGGCATCTATCTCACC
ACACCTCACGTGCACATGCCCATAATTACATACAGCTTCGACTTTCCGTC
GCCACCTACCCCCTGCATGACCAGGAGGGTGCCGGTCCTTTTCGTCCCCA
TCTTGCTCTCCACGTCGCAGCAGACCTTGCCCCGCTCCTCGGTCCTCTAC
CCCCGCCACACACCCACTGACCAAGTAGTCCGTCTCGCCTCGTCCTCCCT
CTCTTCACCGTCCCCACGTCCACGACACTACACCCAGCTTCGTCTGCATC
CTCGTCTATTCACTTCTGGAATCATGGCGTCTTCCGCCAACCCTTCCTCC
CCCTCCCCCTTCTCTCCTGACCCCTCCATCAAGGCAGAAAAGGCCGCCCT
CCGCAAGTGCATCTCAGCCCGTCTTCGTGCCTTGGACGACACACATGTCA
CGGCAGAAGCAAAACGCCTCTTTCCCCGACTATTGGAGCTTGAGGCAGTG
AAGCGTAGTGAGTGCTTGAGTCTGTATTTGTCTATGCCGAGCAAGGAAGT
GCCGACATTCCCGATATTGCTTACGGTACTGATGGAGGGAGGGAAGCAGG
AAGGAGACGCCTCAAGCACCGGCGGAGAGGCAAGGCGAAAGAAAAAGGTG
TACGTCCCCAAG

Synonyms

Publications