jgi.p|Nanoce1779_2|586828, mRNA_4178 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586828
Unique Name	mRNA_4178
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1011
Alignment location	scaffold_8:1041507..1042517 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586914
Track	FilteredModels2
ProteinId	586828

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:1041507..1042517 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586828	gene_4178	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586828	mRNA_4178-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4178	CDS_4178	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:1041507..1042517+
coding sequence from alignment at scaffold_8:1041507..1042517+

mRNA sequence

>mRNA_4178 ID=mRNA_4178|Name=jgi.p|Nanoce1779_2|586828|organism=Nannochloropsis oceanica|type=mRNA|length=1011bp
ATGCTTCCAACTTGAAGACATTTCCTTGTGCTGCGTGAGAAAGGAGGGAC
GACGAAGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGGACGAGGGTCACAT
TCCTCCAGACACAACCTTCTCACAACGACAATTAAAGTCAATATAGGGGT
GGCGATGTCTGCGTGTTGATATTTATACATATACATGGACATTCTGTAAT
ACATAAATGAATCAATGACTTTTTATGTGCATAGATATGGCAAATTCATG
ACTGTGGGAGAGTGATTGAAATACACCTTTCTTAAAGAGAGGGAAATTGT
AGGTGACTGTGTGATTGCTGTCGCTGTGTGTCTTTGTCTGTGTCTGTGGG
CGTACATCGAACCGCATTCACCGGTAAAGGAGAAAGCAAGGTTTAGTAGT
AGGGCACTAACAACAGCAATAAGAATAAAAAGCAAATAAACGTAATGCCT
CTATACGTGAGGTTCCACAACATCATCAACCTACCAACCTCTGCTCATCC
TCCTCTTTTCTTCCTTCCCTCGCTCCCTCCCCTCCAATCTCACTCCCCCA
GATGGTGCCCGCGGCGTCTTCCTCCTCCTTCTCCTACTACTACTACTTCT
GCTCCTTCTCCTCCTCTTCACACCGCCGCACTAGCCCTGTCCGACTCCCC
TTCCTCATCCCACCCCTCCTCTTCCTCACCATCGCACACCACTCCACCTG
CTCCGCCTTCGCCTCCCCCTCCTCCACCACGACCCCCTCCTCTACTTCCT
CGCTCTCCTCCTCTTCCTCTTCCTCCTCCTCCTTCTTTACTCGCCTCTTC
TCCCCCCCTCCTCCTCCACTCTTCGCAGGCGTGGATCCTTCCTCCCCCAT
CCCCTTCTCCTCTCGTCAAATGTCCGCTGCGAGAGCCATCGAAGCCGAGA
GACCATCGACTGACCGTCTCTTCCACGACAATTTATCCCAGCATTTCGCG
GGAAAAGAGGCCATGCAGCAAGCTCGGGAGAGGATGAGGGGAGGAGGGGG
GGGAGGGAGGG

protein sequence of jgi.p|Nanoce1779_2|586828

>mRNA_4178-protein ID=mRNA_4178-protein|Name=jgi.p|Nanoce1779_2|586828|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MPLYVRFHNIINLPTSAHPPLFFLPSLPPLQSHSPRWCPRRLPPPSPTTT
TSAPSPPLHTAALALSDSPSSSHPSSSSPSHTTPPAPPSPPPPPPRPPPL
LPRSPPLPLPPPPSLLASSPPLLLHSSQAWILPPPSPSPLVKCPLREPSK
PRDHRLTVSSTTIYPSISREKRPCSKLGRG*

mRNA from alignment at scaffold_8:1041507..1042517+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4178 ID=mRNA_4178|Name=jgi.p|Nanoce1779_2|586828|organism=Nannochloropsis oceanica|type=mRNA|length=1011bp|location=Sequence derived from alignment at scaffold_8:1041507..1042517+ (Nannochloropsis oceanica)
ATGCTTCCAACTTGAAGACATTTCCTTGTGCTGCGTGAGAAAGGAGGGAC
GACGAAGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGGACGAGGGTCACAT
TCCTCCAGACACAACCTTCTCACAACGACAATTAAAGTCAATATAGGGGT
GGCGATGTCTGCGTGTTGATATTTATACATATACATGGACATTCTGTAAT
ACATAAATGAATCAATGACTTTTTATGTGCATAGATATGGCAAATTCATG
ACTGTGGGAGAGTGATTGAAATACACCTTTCTTAAAGAGAGGGAAATTGT
AGGTGACTGTGTGATTGCTGTCGCTGTGTGTCTTTGTCTGTGTCTGTGGG
CGTACATCGAACCGCATTCACCGGTAAAGGAGAAAGCAAGGTTTAGTAGT
AGGGCACTAACAACAGCAATAAGAATAAAAAGCAAATAAACGTAATGCCT
CTATACGTGAGGTTCCACAACATCATCAACCTACCAACCTCTGCTCATCC
TCCTCTTTTCTTCCTTCCCTCGCTCCCTCCCCTCCAATCTCACTCCCCCA
GATGGTGCCCGCGGCGTCTTCCTCCTCCTTCTCCTACTACTACTACTTCT
GCTCCTTCTCCTCCTCTTCACACCGCCGCACTAGCCCTGTCCGACTCCCC
TTCCTCATCCCACCCCTCCTCTTCCTCACCATCGCACACCACTCCACCTG
CTCCGCCTTCGCCTCCCCCTCCTCCACCACGACCCCCTCCTCTACTTCCT
CGCTCTCCTCCTCTTCCTCTTCCTCCTCCTCCTTCTTTACTCGCCTCTTC
TCCCCCCCTCCTCCTCCACTCTTCGCAGGCGTGGATCCTTCCTCCCCCAT
CCCCTTCTCCTCTCGTCAAATGTCCGCTGCGAGAGCCATCGAAGCCGAGA
GACCATCGACTGACCGTCTCTTCCACGACAATTTATCCCAGCATTTCGCG
GGAAAAGAGGCCATGCAGCAAGCTCGGGAGAGGATGAGGGGAGGAGGGGG
GGGAGGGAGGG

Coding sequence (CDS) from alignment at scaffold_8:1041507..1042517+

>mRNA_4178 ID=mRNA_4178|Name=jgi.p|Nanoce1779_2|586828|organism=Nannochloropsis oceanica|type=CDS|length=543bp|location=Sequence derived from alignment at scaffold_8:1041507..1042517+ (Nannochloropsis oceanica)
ATGCCTCTATACGTGAGGTTCCACAACATCATCAACCTACCAACCTCTGC
TCATCCTCCTCTTTTCTTCCTTCCCTCGCTCCCTCCCCTCCAATCTCACT
CCCCCAGATGGTGCCCGCGGCGTCTTCCTCCTCCTTCTCCTACTACTACT
ACTTCTGCTCCTTCTCCTCCTCTTCACACCGCCGCACTAGCCCTGTCCGA
CTCCCCTTCCTCATCCCACCCCTCCTCTTCCTCACCATCGCACACCACTC
CACCTGCTCCGCCTTCGCCTCCCCCTCCTCCACCACGACCCCCTCCTCTA
CTTCCTCGCTCTCCTCCTCTTCCTCTTCCTCCTCCTCCTTCTTTACTCGC
CTCTTCTCCCCCCCTCCTCCTCCACTCTTCGCAGGCGTGGATCCTTCCTC
CCCCATCCCCTTCTCCTCTCGTCAAATGTCCGCTGCGAGAGCCATCGAAG
CCGAGAGACCATCGACTGACCGTCTCTTCCACGACAATTTATCCCAGCAT
TTCGCGGGAAAAGAGGCCATGCAGCAAGCTCGGGAGAGGATGA

Synonyms

Publications