jgi.p|Nanoce1779_2|426289, mRNA_4172 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|426289
Unique Name	mRNA_4172
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1108
Alignment location	scaffold_8:1022244..1024421 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	426375
Track	FilteredModels2
ProteinId	426289

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:1022244..1024421 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|426289	gene_4172	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|426289	mRNA_4172-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4172	CDS_4172	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:1022244..1024421+
coding sequence from alignment at scaffold_8:1022244..1024421+

mRNA sequence

>mRNA_4172 ID=mRNA_4172|Name=jgi.p|Nanoce1779_2|426289|organism=Nannochloropsis oceanica|type=mRNA|length=1108bp
GGGAGGGGGAGGGAGGGAAGGAGGGAGGGGAGGGGAGGGAGGGAAGGAGG
GAAGGTTGGAGTTCCAGGCACAGGAGGTGATCGATGTCGCGGCCATGCAG
CTCCGCGTCCTCCGCTTCACCCCTGCTGGTTTGTTGGACGGAGAGGCAGG
AAGTGCACTTGTATCCCCCACAAGTGGGAGGCAGCCGGTGGAGAGCTTCC
AGAACAGTTTCCGTCGGGCGGCTTTCCCCGTGAATTCGACCCTCCCCACC
AACGGAGTCTTCCTTCTAGGCCACCATGAACTTTCCCTCCTGGCTCTTCA
GGCGTGGTGGCAGCGAGTGGAGGCCAGGCTGGAGGGAGGGGAAGGCCTCG
ACGCATTGTGGCTTGCCTTGGAGGAAGGAGGAGAGTTCAAATCCACTCCA
GAGGGCGCTGCCCGCCTAGCCTCCTTCCTCGACAGCTACCTCCGGCTGGG
AACGGCCCATGTCCCTTCCTCCTCCTCCTCCTCCTCCTCCCCGCTCGAGG
GAGGGAGGGAGGGAGGGAGGGAGGACGCCGCCCTGGTGCAGGGGCATTAT
GCCATGCTGGCCGCGGTGAGCGTCGACTATTGCGTGGAGACAAGAAGGGA
AGATCGGCTAGCGGGAGAGGTGTTTGAGGCCTTTGTGCGGGCAGGGCAGG
CCCGCACCTTTCTTGAAACCCTGGAGCCCTACATCCTCTCGAGCCGTCTC
TCCACCCTCGCTCCCCCCGTCCTCCCCCCCTTCGTCGAGCACTACCTCGA
CCGCGGCATGGGCGAGAGGGCCGAGAGGTGTTTGTTGCACCTCACGGACT
TCAAGGGGCTGGATTTCGCTCATGTCCTGGGGTTGTTGAGGTAGGTAGGT
AGGGAGGGAGGGAAGGAGGGAGGGGGAGACGGAAATCCTTCCTCCTTTCC
AATCGATCGGCGGCAGCGGAGCCGGACGGAAGTAGTGGGGGACGGAGAGA
GGGAGAAAAGGATAGAGGTGCTGGCTCACACTCCCATCATCTTCCCCTGG
TGCATGAATGCATAACTTTTCATGAATTTAATGACAGGCGACACCGGCTG
TGGTTGAGCTTGGCCCATGTCTACACCCGGGGGCTTTACGATTACCTCTC
CCCCTTGA

protein sequence of jgi.p|Nanoce1779_2|426289

>mRNA_4172-protein ID=mRNA_4172-protein|Name=jgi.p|Nanoce1779_2|426289|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MQLRVLRFTPAGLLDGEAGSALVSPTSGRQPVESFQNSFRRAAFPVNSTL
PTNGVFLLGHHELSLLALQAWWQRVEARLEGGEGLDALWLALEEGGEFKS
TPEGAARLASFLDSYLRLGTAHVPSSSSSSSSPLEGGREGGREDAALVQG
HYAMLAAVSVDYCVETRREDRLAGEVFEAFVRAGQARTFLETLEPYILSS
RLSTLAPPVLPPFVEHYLDRGMGERAERCLLHLTDFKGLDFAHVLGLLR*

mRNA from alignment at scaffold_8:1022244..1024421+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4172 ID=mRNA_4172|Name=jgi.p|Nanoce1779_2|426289|organism=Nannochloropsis oceanica|type=mRNA|length=2178bp|location=Sequence derived from alignment at scaffold_8:1022244..1024421+ (Nannochloropsis oceanica)
GGGAGGGGGAGGGAGGGAAGGAGGGAGGGGAGGGGAGGGAGGGAAGGAGG
GAAGGTTGGAGTTCCAGGCACAGGAGGTGATCGATGTCGCGGCCATGCAG
GTACGTTGCTTGGATGCCTTCCCCTCCCTCCCTCCCTCCTTTCCCTGTTT
CCTTCCTCTTTTACCTCAACCGATCTTGTTTTCGATGCGGATCCTCCGTA
TTATCTTTTGGCTATCCCTTTCCCTCCCTCACTCCTTCTCCCTCTCCCTT
CTTCCTAGCTCCGCGTCCTCCGCTTCACCCCTGCTGGTTTGTTGGACGGA
GAGGCAGGAAGTGCACTTGTATCCCCCACAAGTGGGAGGCAGCCGGTGGA
GAGCTTCCAGAACAGGTTGGGAGGGAGGGAGGGAGGGAGGGAAAGAGGAA
ATATAGGATCATTCGCCTCTGCGGGTTTCTGGAGTGAATGTTGGGAGCAG
GAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAAAGGTATATCCAAACG
ATGAAAACGGAGAATCCGAGGGAGGGGGGGGTAGAAGGGAAGGAGCATTG
CAACACTACATTTATATTTTTTGGGGGGGTTATCCATGCATCTTTTTTCC
CCCCCTTCTCCTTCTCTTTCTTTCCCCCTTTCCCTTTCCCACTCTCTCCC
TCTTCCTCTTTCTCTCACTCCTCCTCCTTTTTCCTCCTCGTCTTCTCGAC
AGTTTCCGTCGGGCGGCTTTCCCCGTGAATTCGACCCTCCCCACCAACGG
AGTCTTCCTTCTAGGTGCGTCATCCTCCCTCCCTCCCTCCCCCCCTCCCT
TTCTCCCTCCCTCCCTTCCGTCCTTTGTAGTAGCCGGGCTTTCATCACAA
TCCACTCTCATGATCTACGCTTTCTTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTTCCTAGGCCACCATGAACTTTCCCTCCTGGCTCT
TCAGGCGTGGTGGCAGCGAGTGGAGGCCAGGCTGGAGGGAGGGGAAGGCC
TCGACGCATTGTGGCTTGCCTTGGAGGAAGGAGGAGAGGTAGAGAGGGAG
GGAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGAAAGGGGGTGAGGGGGAT
TTTCACACGGACGCGTCTGTTCTTACTCTTTCTCTCTCGCGCTCTGTCTC
CCTCTCTCTCTCTATCTCTCTCTCTTCCTCCTCTCTTATTTTCTTGTTTT
TCTCCTTCCCTCCTCCCCTCTTTTTGATTCTTCTTCCTTTCCTCTTTCTT
TCTCCCTTTCTTATTCTTTTTTCCCCTTCTTCGTTCTCCCCTTCTCACCC
TCCCCCTAAACACAGTTCAAATCCACTCCAGAGGGCGCTGCCCGCCTAGC
CTCCTTCCTCGACAGCTACCTCCGGCTGGGAACGGCCCATGTCCCTTCCT
CCTCCTCCTCCTCCTCCTCCCCGCTCGAGGGAGGGAGGGAGGGAGGGAGG
GAGGACGCCGCCCTGGTGCAGGGGCATTATGCCATGCTGGCCGCGGTGAG
CGTCGACTATTGCGTGGAGACAAGAAGGGAAGATCGGCTAGCGGGAGAGG
TGTTTGAGGCCTTTGTGCGGGCAGGGCAGGTAGGGGGGGAAGGAGGGAGA
GAGGGAGGGAGGGAGGAAGGGAGGGAGACAGGGAAAGAGAGAAAAGTCGA
GATGTTTTCATGGGTTGATCCGAAATACACTCCTCCCTCCCTCCCTCCCT
CCCTCCCTTCCTCCCTCAGGCCCGCACCTTTCTTGAAACCCTGGAGCCCT
ACATCCTCTCGAGCCGTCTCTCCACCCTCGCTCCCCCCGTCCTCCCCCCC
TTCGTCGAGCACTACCTCGACCGCGGCATGGGCGAGAGGGCCGAGAGGTG
TTTGTTGCACCTCACGGACTTCAAGGGGCTGGATTTCGCTCATGTCCTGG
GGTTGTTGAGGTAGGTAGGTAGGGAGGGAGGGAAGGAGGGAGGGGGAGAC
GGAAATCCTTCCTCCTTTCCAATCGATCGGCGGCAGCGGAGCCGGACGGA
AGTAGTGGGGGACGGAGAGAGGGAGAAAAGGATAGAGGTGCTGGCTCACA
CTCCCATCATCTTCCCCTGGTGCATGAATGCATAACTTTTCATGAATTTA
ATGACAGGCGACACCGGCTGTGGTTGAGCTTGGCCCATGTCTACACCCGG
GGGCTTTACGATTACCTCTCCCCCTTGA

Coding sequence (CDS) from alignment at scaffold_8:1022244..1024421+

>mRNA_4172 ID=mRNA_4172|Name=jgi.p|Nanoce1779_2|426289|organism=Nannochloropsis oceanica|type=CDS|length=4500bp|location=Sequence derived from alignment at scaffold_8:1022244..1024421+ (Nannochloropsis oceanica)
ATGCAGCTCCGCGTCCTCCGCTTCACCCCTGCTGGTTTGTTGGACGGAGA
GGCAGGAAGTGCACTTGTATCCCCCACAAGTGGGAGGCAGCCGGTGGAGA
GCTTCCAGAACAGTTTCCGTCGGGCGGCTTTCCCCGTGAATTCGACCCTC
CCCACCAACGGAGTCTTCCTTCTAGGCCACCATGAACTTTCCCTCCTGGC
TCTTCAGGCGTGGTGGCAGCGAGTGGAGGCCAGGCTGGAGGGAGGGGAAG
GCCTCGACGCATTGTGGCTTGCCTTGGAGGAAGGAGGAGAGTTCAAATCC
ACTCCAGAGGGCGCTGCCCGCCTAGCCTCCTTCCTCGACAGCTACCTCCG
GCTGGGAACGGCCCATGTCCCTTCCTCCTCCTCCTCCTCCTCCTCCCCGC
TCGAGGGAGGGAGGGAGGGAGGGAGGGAGGACGCCGCCCTGGTGCAGGGG
CATTATGCCATGCTGGCCGCGGTGAGCGTCGACTATTGCGTGGAGACAAG
AAGGGAAGATCGGCTAGCGGGAGAGGTGTTTGAGGCCTTTGTGCGGGCAG
GGCAGGCCCGCACCTTTCTTGAAACCCTGGAGCCCTACATCCTCTCGAGC
CGTCTCTCCACCCTCGCTCCCCCCGTCCTCCCCCCCTTCGTCGAGCACTA
CCTCGACCGCGGCATGGGCGAGAGGGCCGAGAGGTGTTTGTTGCACCTCA
CGGACTTCAAGGGGCTGGATTTCGCTCATGTCCTGGGGTTGTTGAGGTAG
ATGCAGCTCCGCGTCCTCCGCTTCACCCCTGCTGGTTTGTTGGACGGAGA
GGCAGGAAGTGCACTTGTATCCCCCACAAGTGGGAGGCAGCCGGTGGAGA
GCTTCCAGAACAGTTTCCGTCGGGCGGCTTTCCCCGTGAATTCGACCCTC
CCCACCAACGGAGTCTTCCTTCTAGGCCACCATGAACTTTCCCTCCTGGC
TCTTCAGGCGTGGTGGCAGCGAGTGGAGGCCAGGCTGGAGGGAGGGGAAG
GCCTCGACGCATTGTGGCTTGCCTTGGAGGAAGGAGGAGAGTTCAAATCC
ACTCCAGAGGGCGCTGCCCGCCTAGCCTCCTTCCTCGACAGCTACCTCCG
GCTGGGAACGGCCCATGTCCCTTCCTCCTCCTCCTCCTCCTCCTCCCCGC
TCGAGGGAGGGAGGGAGGGAGGGAGGGAGGACGCCGCCCTGGTGCAGGGG
CATTATGCCATGCTGGCCGCGGTGAGCGTCGACTATTGCGTGGAGACAAG
AAGGGAAGATCGGCTAGCGGGAGAGGTGTTTGAGGCCTTTGTGCGGGCAG
GGCAGGCCCGCACCTTTCTTGAAACCCTGGAGCCCTACATCCTCTCGAGC
CGTCTCTCCACCCTCGCTCCCCCCGTCCTCCCCCCCTTCGTCGAGCACTA
CCTCGACCGCGGCATGGGCGAGAGGGCCGAGAGGTGTTTGTTGCACCTCA
CGGACTTCAAGGGGCTGGATTTCGCTCATGTCCTGGGGTTGTTGAGGTAG
ATGCAGCTCCGCGTCCTCCGCTTCACCCCTGCTGGTTTGTTGGACGGAGA
GGCAGGAAGTGCACTTGTATCCCCCACAAGTGGGAGGCAGCCGGTGGAGA
GCTTCCAGAACAGTTTCCGTCGGGCGGCTTTCCCCGTGAATTCGACCCTC
CCCACCAACGGAGTCTTCCTTCTAGGCCACCATGAACTTTCCCTCCTGGC
TCTTCAGGCGTGGTGGCAGCGAGTGGAGGCCAGGCTGGAGGGAGGGGAAG
GCCTCGACGCATTGTGGCTTGCCTTGGAGGAAGGAGGAGAGTTCAAATCC
ACTCCAGAGGGCGCTGCCCGCCTAGCCTCCTTCCTCGACAGCTACCTCCG
GCTGGGAACGGCCCATGTCCCTTCCTCCTCCTCCTCCTCCTCCTCCCCGC
TCGAGGGAGGGAGGGAGGGAGGGAGGGAGGACGCCGCCCTGGTGCAGGGG
CATTATGCCATGCTGGCCGCGGTGAGCGTCGACTATTGCGTGGAGACAAG
AAGGGAAGATCGGCTAGCGGGAGAGGTGTTTGAGGCCTTTGTGCGGGCAG
GGCAGGCCCGCACCTTTCTTGAAACCCTGGAGCCCTACATCCTCTCGAGC
CGTCTCTCCACCCTCGCTCCCCCCGTCCTCCCCCCCTTCGTCGAGCACTA
CCTCGACCGCGGCATGGGCGAGAGGGCCGAGAGGTGTTTGTTGCACCTCA
CGGACTTCAAGGGGCTGGATTTCGCTCATGTCCTGGGGTTGTTGAGGTAG
ATGCAGCTCCGCGTCCTCCGCTTCACCCCTGCTGGTTTGTTGGACGGAGA
GGCAGGAAGTGCACTTGTATCCCCCACAAGTGGGAGGCAGCCGGTGGAGA
GCTTCCAGAACAGTTTCCGTCGGGCGGCTTTCCCCGTGAATTCGACCCTC
CCCACCAACGGAGTCTTCCTTCTAGGCCACCATGAACTTTCCCTCCTGGC
TCTTCAGGCGTGGTGGCAGCGAGTGGAGGCCAGGCTGGAGGGAGGGGAAG
GCCTCGACGCATTGTGGCTTGCCTTGGAGGAAGGAGGAGAGTTCAAATCC
ACTCCAGAGGGCGCTGCCCGCCTAGCCTCCTTCCTCGACAGCTACCTCCG
GCTGGGAACGGCCCATGTCCCTTCCTCCTCCTCCTCCTCCTCCTCCCCGC
TCGAGGGAGGGAGGGAGGGAGGGAGGGAGGACGCCGCCCTGGTGCAGGGG
CATTATGCCATGCTGGCCGCGGTGAGCGTCGACTATTGCGTGGAGACAAG
AAGGGAAGATCGGCTAGCGGGAGAGGTGTTTGAGGCCTTTGTGCGGGCAG
GGCAGGCCCGCACCTTTCTTGAAACCCTGGAGCCCTACATCCTCTCGAGC
CGTCTCTCCACCCTCGCTCCCCCCGTCCTCCCCCCCTTCGTCGAGCACTA
CCTCGACCGCGGCATGGGCGAGAGGGCCGAGAGGTGTTTGTTGCACCTCA
CGGACTTCAAGGGGCTGGATTTCGCTCATGTCCTGGGGTTGTTGAGGTAG
ATGCAGCTCCGCGTCCTCCGCTTCACCCCTGCTGGTTTGTTGGACGGAGA
GGCAGGAAGTGCACTTGTATCCCCCACAAGTGGGAGGCAGCCGGTGGAGA
GCTTCCAGAACAGTTTCCGTCGGGCGGCTTTCCCCGTGAATTCGACCCTC
CCCACCAACGGAGTCTTCCTTCTAGGCCACCATGAACTTTCCCTCCTGGC
TCTTCAGGCGTGGTGGCAGCGAGTGGAGGCCAGGCTGGAGGGAGGGGAAG
GCCTCGACGCATTGTGGCTTGCCTTGGAGGAAGGAGGAGAGTTCAAATCC
ACTCCAGAGGGCGCTGCCCGCCTAGCCTCCTTCCTCGACAGCTACCTCCG
GCTGGGAACGGCCCATGTCCCTTCCTCCTCCTCCTCCTCCTCCTCCCCGC
TCGAGGGAGGGAGGGAGGGAGGGAGGGAGGACGCCGCCCTGGTGCAGGGG
CATTATGCCATGCTGGCCGCGGTGAGCGTCGACTATTGCGTGGAGACAAG
AAGGGAAGATCGGCTAGCGGGAGAGGTGTTTGAGGCCTTTGTGCGGGCAG
GGCAGGCCCGCACCTTTCTTGAAACCCTGGAGCCCTACATCCTCTCGAGC
CGTCTCTCCACCCTCGCTCCCCCCGTCCTCCCCCCCTTCGTCGAGCACTA
CCTCGACCGCGGCATGGGCGAGAGGGCCGAGAGGTGTTTGTTGCACCTCA
CGGACTTCAAGGGGCTGGATTTCGCTCATGTCCTGGGGTTGTTGAGGTAG
ATGCAGCTCCGCGTCCTCCGCTTCACCCCTGCTGGTTTGTTGGACGGAGA
GGCAGGAAGTGCACTTGTATCCCCCACAAGTGGGAGGCAGCCGGTGGAGA
GCTTCCAGAACAGTTTCCGTCGGGCGGCTTTCCCCGTGAATTCGACCCTC
CCCACCAACGGAGTCTTCCTTCTAGGCCACCATGAACTTTCCCTCCTGGC
TCTTCAGGCGTGGTGGCAGCGAGTGGAGGCCAGGCTGGAGGGAGGGGAAG
GCCTCGACGCATTGTGGCTTGCCTTGGAGGAAGGAGGAGAGTTCAAATCC
ACTCCAGAGGGCGCTGCCCGCCTAGCCTCCTTCCTCGACAGCTACCTCCG
GCTGGGAACGGCCCATGTCCCTTCCTCCTCCTCCTCCTCCTCCTCCCCGC
TCGAGGGAGGGAGGGAGGGAGGGAGGGAGGACGCCGCCCTGGTGCAGGGG
CATTATGCCATGCTGGCCGCGGTGAGCGTCGACTATTGCGTGGAGACAAG
AAGGGAAGATCGGCTAGCGGGAGAGGTGTTTGAGGCCTTTGTGCGGGCAG
GGCAGGCCCGCACCTTTCTTGAAACCCTGGAGCCCTACATCCTCTCGAGC
CGTCTCTCCACCCTCGCTCCCCCCGTCCTCCCCCCCTTCGTCGAGCACTA
CCTCGACCGCGGCATGGGCGAGAGGGCCGAGAGGTGTTTGTTGCACCTCA
CGGACTTCAAGGGGCTGGATTTCGCTCATGTCCTGGGGTTGTTGAGGTAG

Synonyms

Publications