jgi.p|Nanoce1779_2|586800, mRNA_4171 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586800
Unique NamemRNA_4171
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length697
Alignment locationscaffold_8:1018103..1018799 +

Link to JBrowse

Properties
Property NameValue
TranscriptId586886
TrackFilteredModels2
ProteinId586800
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:1018103..1018799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586800gene_4171Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586800mRNA_4171-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4171CDS_4171Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4171 ID=mRNA_4171|Name=jgi.p|Nanoce1779_2|586800|organism=Nannochloropsis oceanica|type=mRNA|length=697bp
GGGGGGAGGAGGAGGAGGAGGGAGTGCGAGGAAGAAAAGTTTGAGTGGCA
TCGGTGGGGGGAAAGAGAGCCCAGGAAGCTGCCTTGAGGACAAGGCGGCC
AATACGCTCGAGATAGTGGAAGGTGGTGATGGCGTCGGAGGGATGGATGT
ACAGGGGATCTGAAATCTTAGCGCTGCTGCTACTCCTGCTGTCGCCGCTG
TTGCTGCTGCTCCTGCTCCTGCTCCTGCTGCTGCTTCGGGTGTTGGTGGC
GTGGGACTGGGGCATGCCGAGCCGATCGAAGTGCTGCTTAATTTGTCCTA
ACTTTTCGGCCACGCGATTGGACACGAGCAATTTTTGGTATTCTTCTTGC
TGCCATTGCTTAGCAGTAGCAGCAGCTGCTGCAGCTGCCGCAGGTGCGAC
AGGAGAAGAGTAATAGGAGGAGATAGGGGAAAGGGGCGACGGGGAAGTAT
CATCTAGGTACAGTAGAATGTAGCCTCGCTCCAGCAGACCCGCTTGGACA
TTTTCCAATGCCGCCGTTGCCTCAGAGGGAGCGACAGCGCGACAACAAAG
CAAGCTGTCGTGCTCTAAGGCTTCCGCCAGCCTTTTGAGTGAGACACCTT
TCTTTCTTTCTTTTCGATGACTCAAGATCCGACGCGGTTTCTTGTTATTC
GATCGACTGCCGCTGCCATAGGCCTTCATCGTGCCGGCGTCTTGGCT
back to top

protein sequence of jgi.p|Nanoce1779_2|586800

>mRNA_4171-protein ID=mRNA_4171-protein|Name=jgi.p|Nanoce1779_2|586800|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MASEGWMYRGSEILALLLLLLSPLLLLLLLLLLLLLRVLVAWDWGMPSRS
KCCLICPNFSATRLDTSNFWYSSCCHCLAVAAAAAAAAGATGEE*
back to top

mRNA from alignment at scaffold_8:1018103..1018799+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4171 ID=mRNA_4171|Name=jgi.p|Nanoce1779_2|586800|organism=Nannochloropsis oceanica|type=mRNA|length=697bp|location=Sequence derived from alignment at scaffold_8:1018103..1018799+ (Nannochloropsis oceanica)
GGGGGGAGGAGGAGGAGGAGGGAGTGCGAGGAAGAAAAGTTTGAGTGGCA
TCGGTGGGGGGAAAGAGAGCCCAGGAAGCTGCCTTGAGGACAAGGCGGCC
AATACGCTCGAGATAGTGGAAGGTGGTGATGGCGTCGGAGGGATGGATGT
ACAGGGGATCTGAAATCTTAGCGCTGCTGCTACTCCTGCTGTCGCCGCTG
TTGCTGCTGCTCCTGCTCCTGCTCCTGCTGCTGCTTCGGGTGTTGGTGGC
GTGGGACTGGGGCATGCCGAGCCGATCGAAGTGCTGCTTAATTTGTCCTA
ACTTTTCGGCCACGCGATTGGACACGAGCAATTTTTGGTATTCTTCTTGC
TGCCATTGCTTAGCAGTAGCAGCAGCTGCTGCAGCTGCCGCAGGTGCGAC
AGGAGAAGAGTAATAGGAGGAGATAGGGGAAAGGGGCGACGGGGAAGTAT
CATCTAGGTACAGTAGAATGTAGCCTCGCTCCAGCAGACCCGCTTGGACA
TTTTCCAATGCCGCCGTTGCCTCAGAGGGAGCGACAGCGCGACAACAAAG
CAAGCTGTCGTGCTCTAAGGCTTCCGCCAGCCTTTTGAGTGAGACACCTT
TCTTTCTTTCTTTTCGATGACTCAAGATCCGACGCGGTTTCTTGTTATTC
GATCGACTGCCGCTGCCATAGGCCTTCATCGTGCCGGCGTCTTGGCT
back to top

Coding sequence (CDS) from alignment at scaffold_8:1018103..1018799+

>mRNA_4171 ID=mRNA_4171|Name=jgi.p|Nanoce1779_2|586800|organism=Nannochloropsis oceanica|type=CDS|length=285bp|location=Sequence derived from alignment at scaffold_8:1018103..1018799+ (Nannochloropsis oceanica)
ATGGCGTCGGAGGGATGGATGTACAGGGGATCTGAAATCTTAGCGCTGCT
GCTACTCCTGCTGTCGCCGCTGTTGCTGCTGCTCCTGCTCCTGCTCCTGC
TGCTGCTTCGGGTGTTGGTGGCGTGGGACTGGGGCATGCCGAGCCGATCG
AAGTGCTGCTTAATTTGTCCTAACTTTTCGGCCACGCGATTGGACACGAG
CAATTTTTGGTATTCTTCTTGCTGCCATTGCTTAGCAGTAGCAGCAGCTG
CTGCAGCTGCCGCAGGTGCGACAGGAGAAGAGTAA
back to top
Synonyms
Publications