jgi.p|Nanoce1779_2|586798, mRNA_4170 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586798
Unique NamemRNA_4170
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length670
Alignment locationscaffold_8:1016006..1016675 +

Link to JBrowse

Properties
Property NameValue
TranscriptId586884
TrackFilteredModels2
ProteinId586798
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:1016006..1016675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586798gene_4170Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586798mRNA_4170-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4170CDS_4170Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4170 ID=mRNA_4170|Name=jgi.p|Nanoce1779_2|586798|organism=Nannochloropsis oceanica|type=mRNA|length=670bp
GATTTCTTTGCTACCTATTATACAACCTGAAAGAATTCAGAATAATCAGC
TATTTGGCTCCCGTCACGCCTCCCCTTCCCCTCCCCCTCCACCCCATCCA
CTTCCCAAAGCTCCTCCTCCACCCACAATGGTTTTACGGTCCTTGCCATC
ACTCCCTCCTTCTCCTCTTCCACTCCTGGTGGCTCTTCGTTCTCTCAATC
TCCCTCCCTTAATAAACACCCACGTTGTCCTCCTCGTTGCCACCCCGGCC
TCCCTCCTCTTCGTCCATATCTCCGTCTTTTCTGAAAGGGCCAGTCACCT
GCAGCGGTATCTCCTCCTCCTCGATCTCCTTCCTCTTTCACGAAGACCTT
TCTCATCTTTCTTGTATCCCCTGTTTTTATTCTTCACCCTCTTCCACCTC
CCACTGCAATGTCGACATGGCCTCCCCTACTCTCCTCTCCTCCCCTCTTT
CTTCTATCCCGTCCTTCATCCCCCCGAAATCATTCACCAAGCACCTGGAC
GCATCATCATTTTCCTCCTCCTTCCACTCCCCTTCCTTCTTTCCCTCCCT
CTCCCTTTCTCTTCCTCCGACTATTTCCGGAGCTGCTGCTGCTGCTGCTG
CTGTTGGCGCTCCATACCTGCGCCTCGCCGCACAGCCGCCTACTCCTACC
TCTAACACTTCGTCCTCAAC
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protein sequence of jgi.p|Nanoce1779_2|586798

>mRNA_4170-protein ID=mRNA_4170-protein|Name=jgi.p|Nanoce1779_2|586798|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MVLRSLPSLPPSPLPLLVALRSLNLPPLINTHVVLLVATPASLLFVHISV
FSERASHLQRYLLLLDLLPLSRRPFSSFLYPLFLFFTLFHLPLQCRHGLP
YSPLLPSFFYPVLHPPEIIHQAPGRIIIFLLLPLPFLLSLPLPFSSSDYF
RSCCCCCCCWRSIPAPRRTAAYSYL*
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mRNA from alignment at scaffold_8:1016006..1016675+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4170 ID=mRNA_4170|Name=jgi.p|Nanoce1779_2|586798|organism=Nannochloropsis oceanica|type=mRNA|length=670bp|location=Sequence derived from alignment at scaffold_8:1016006..1016675+ (Nannochloropsis oceanica)
GATTTCTTTGCTACCTATTATACAACCTGAAAGAATTCAGAATAATCAGC
TATTTGGCTCCCGTCACGCCTCCCCTTCCCCTCCCCCTCCACCCCATCCA
CTTCCCAAAGCTCCTCCTCCACCCACAATGGTTTTACGGTCCTTGCCATC
ACTCCCTCCTTCTCCTCTTCCACTCCTGGTGGCTCTTCGTTCTCTCAATC
TCCCTCCCTTAATAAACACCCACGTTGTCCTCCTCGTTGCCACCCCGGCC
TCCCTCCTCTTCGTCCATATCTCCGTCTTTTCTGAAAGGGCCAGTCACCT
GCAGCGGTATCTCCTCCTCCTCGATCTCCTTCCTCTTTCACGAAGACCTT
TCTCATCTTTCTTGTATCCCCTGTTTTTATTCTTCACCCTCTTCCACCTC
CCACTGCAATGTCGACATGGCCTCCCCTACTCTCCTCTCCTCCCCTCTTT
CTTCTATCCCGTCCTTCATCCCCCCGAAATCATTCACCAAGCACCTGGAC
GCATCATCATTTTCCTCCTCCTTCCACTCCCCTTCCTTCTTTCCCTCCCT
CTCCCTTTCTCTTCCTCCGACTATTTCCGGAGCTGCTGCTGCTGCTGCTG
CTGTTGGCGCTCCATACCTGCGCCTCGCCGCACAGCCGCCTACTCCTACC
TCTAACACTTCGTCCTCAAC
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Coding sequence (CDS) from alignment at scaffold_8:1016006..1016675+

>mRNA_4170 ID=mRNA_4170|Name=jgi.p|Nanoce1779_2|586798|organism=Nannochloropsis oceanica|type=CDS|length=528bp|location=Sequence derived from alignment at scaffold_8:1016006..1016675+ (Nannochloropsis oceanica)
ATGGTTTTACGGTCCTTGCCATCACTCCCTCCTTCTCCTCTTCCACTCCT
GGTGGCTCTTCGTTCTCTCAATCTCCCTCCCTTAATAAACACCCACGTTG
TCCTCCTCGTTGCCACCCCGGCCTCCCTCCTCTTCGTCCATATCTCCGTC
TTTTCTGAAAGGGCCAGTCACCTGCAGCGGTATCTCCTCCTCCTCGATCT
CCTTCCTCTTTCACGAAGACCTTTCTCATCTTTCTTGTATCCCCTGTTTT
TATTCTTCACCCTCTTCCACCTCCCACTGCAATGTCGACATGGCCTCCCC
TACTCTCCTCTCCTCCCCTCTTTCTTCTATCCCGTCCTTCATCCCCCCGA
AATCATTCACCAAGCACCTGGACGCATCATCATTTTCCTCCTCCTTCCAC
TCCCCTTCCTTCTTTCCCTCCCTCTCCCTTTCTCTTCCTCCGACTATTTC
CGGAGCTGCTGCTGCTGCTGCTGCTGTTGGCGCTCCATACCTGCGCCTCG
CCGCACAGCCGCCTACTCCTACCTCTAA
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Synonyms
Publications