jgi.p|Nanoce1779_2|636758, mRNA_417 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|636758
Unique NamemRNA_417
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length966
Alignment locationscaffold_3:1032044..1033372 -

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Properties
Property NameValue
TranscriptId636844
TrackFilteredModels2
ProteinId636758
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1032044..1033372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636758gene_417Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636758mRNA_417-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_417CDS_417Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_417 ID=mRNA_417|Name=jgi.p|Nanoce1779_2|636758|organism=Nannochloropsis oceanica|type=mRNA|length=966bp
ATGCGGCCCAGCACGGCCAGAGGCGTCATTTTCCAGGCATTTACATCCAC
ACCGACACCTACAATCCGTACTTTGAGCATCTCGGCCGATGCTCACCGCG
TGGCAGATTTGCTGAGCGATTGCAAGCACGTTGTGGCGATTACCGGCGCT
GGAATCAGCACCGAGAGCGGCATTCCGGATTACCGCTCTCCCACTGGTTC
CTTCTCGCGCGGGTTCAAGCCGATGGTTCACGACGAGTTCATCAACCATC
AATTGAAACGCTCTCGGTACTGGGCACGTTCTATGTTAGGCTATCACCGC
TTTTCGGAGGCCAAGCCGAATGAGGGCCATCGGGCGTTGGCATCTTTGGA
GAAGGACTTGGGGATGCTCGGCTTGTTGATCAGCCAGAATGTAGATGGCC
TGCACCAAAAAGCCGGCTCCGAACGCGTACTCGACCTCCACGGACGCAAC
GACCGCATCGTGTGCTTAGGGTGTGGGCATGAAACACATCGCCGTTCCTT
TCAAGCCGCCCTTGAGGAAGAAAACAGGCAGTGGGTGTCGACCTACGTCC
CGTCCTCCCCTGCCGCCTTACAAATGTTTTCCGACGGCGACGTCGAGTTG
GAAAATGTGGCTTTTGAAGATTTCGTGGTCCCGGCATGTAAGCATTGTGG
GGGGGTGCTAAAGCCAGCGGTTGTTTTTTATGGTGACGTCGTTCCCACCC
CTGTGGTGGAGGAGGCGTTCGAGGCCATAGCGGCGGCGGACGCAGTGCTG
GTGGCAGGGACAAGCCTCATGGTTTATAGCAGTTGGAGATTTGTCTCAGA
TGCATCGAAGAGGGGGAAAAAAATCGTCATTGTCAATCAGGGGGGAACGA
GAGCGGAGAAAGAGGGTATAGAGCATGTGAAGGTGGAGGGGGCATGTGGG
GAGGTGCTGGGGGGGGCAGTACATTTGTTGAAGGAACGGAGGGAGGGAAG
GAGGGAGGGGTGGTAG
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protein sequence of jgi.p|Nanoce1779_2|636758

>mRNA_417-protein ID=mRNA_417-protein|Name=jgi.p|Nanoce1779_2|636758|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MRPSTARGVIFQAFTSTPTPTIRTLSISADAHRVADLLSDCKHVVAITGA
GISTESGIPDYRSPTGSFSRGFKPMVHDEFINHQLKRSRYWARSMLGYHR
FSEAKPNEGHRALASLEKDLGMLGLLISQNVDGLHQKAGSERVLDLHGRN
DRIVCLGCGHETHRRSFQAALEEENRQWVSTYVPSSPAALQMFSDGDVEL
ENVAFEDFVVPACKHCGGVLKPAVVFYGDVVPTPVVEEAFEAIAAADAVL
VAGTSLMVYSSWRFVSDASKRGKKIVIVNQGGTRAEKEGIEHVKVEGACG
EVLGGAVHLLKERREGRREGW*
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mRNA from alignment at scaffold_3:1032044..1033372-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_417 ID=mRNA_417|Name=jgi.p|Nanoce1779_2|636758|organism=Nannochloropsis oceanica|type=mRNA|length=1329bp|location=Sequence derived from alignment at scaffold_3:1032044..1033372- (Nannochloropsis oceanica)
ATGCGGCCCAGCACGGCCAGAGGCGTCATTTTCCAGGCATTTACATCCAC
ACCGACACCTACAATCCGTACTTTGAGCATCTCGGCCGATGCTCACCGCG
TGGCAGATTTGCTGAGCGATTGCAAGCACGTTGTGGCGATTACCGGCGCT
GGAATCAGCACCGAGAGCGGCATTCCGGGTGAGTGAGAGCGGGTACGAAC
CCGAGATGAATGAGTGAAAGGAAGTGTTCTACCCCCACCCCATCCCCTAC
CATCACAACTACCAACATCAACAAAATGCAGAGTTGTAAATCGCAGCTAA
CATATCATTCAATCTCCCTCCCTTTTCTTATCTTCGTCTCACCTTCTCCA
CCCCCACAAGATTACCGCTCTCCCACTGGTTCCTTCTCGCGCGGGTTCAA
GCCGATGGTTCACGACGAGTTCATCAACCATCAATTGAAACGCTCTCGGT
ACTGGGCACGTTCTATGTTAGGCTATCACCGCTTTTCGGAGGCCAAGCCG
AATGAGGGCCATCGGGCGTTGGCATCTTTGGAGAAGGACTTGGGGATGCT
CGGCTTGTTGATCAGCCAGAATGTAGATGTAAGTATTTCCTTGTCTTTTG
GGGGGAACAATCGCATTTGTATCATTCAATGAGAAGGAATTAGGGAGGGC
AGGGAGAAACAATTTCTCTCTCTATCTTTCTCTCTCTTCGCTGCCTGACC
ATCCGACTCTCATCACTTCTTTCCTTTTGTCGCCTTTCCCATTTCCCCCC
ATCCAACAGGGCCTGCACCAAAAAGCCGGCTCCGAACGCGTACTCGACCT
CCACGGACGCAACGACCGCATCGTGTGCTTAGGGTGTGGGCATGAAACAC
ATCGCCGTTCCTTTCAAGCCGCCCTTGAGGAAGAAAACAGGCAGTGGGTG
TCGACCTACGTCCCGTCCTCCCCTGCCGCCTTACAAATGTTTTCCGACGG
CGACGTCGAGTTGGAAAATGTGGCTTTTGAAGATTTCGTGGTCCCGGCAT
GTAAGCATTGTGGGGGGGTGCTAAAGCCAGCGGTTGTTTTTTATGGTGAC
GTCGTTCCCACCCCTGTGGTGGAGGAGGCGTTCGAGGCCATAGCGGCGGC
GGACGCAGTGCTGGTGGCAGGGACAAGCCTCATGGTTTATAGCAGTTGGA
GATTTGTCTCAGATGCATCGAAGAGGGGGAAAAAAATCGTCATTGTCAAT
CAGGGGGGAACGAGAGCGGAGAAAGAGGGTATAGAGCATGTGAAGGTGGA
GGGGGCATGTGGGGAGGTGCTGGGGGGGGCAGTACATTTGTTGAAGGAAC
GGAGGGAGGGAAGGAGGGAGGGGTGGTAG
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Coding sequence (CDS) from alignment at scaffold_3:1032044..1033372-

>mRNA_417 ID=mRNA_417|Name=jgi.p|Nanoce1779_2|636758|organism=Nannochloropsis oceanica|type=CDS|length=2898bp|location=Sequence derived from alignment at scaffold_3:1032044..1033372- (Nannochloropsis oceanica)
GGCCTGCACCAAAAAGCCGGCTCCGAACGCGTACTCGACCTCCACGGACG
CAACGACCGCATCGTGTGCTTAGGGTGTGGGCATGAAACACATCGCCGTT
CCTTTCAAGCCGCCCTTGAGGAAGAAAACAGGCAGTGGGTGTCGACCTAC
GTCCCGTCCTCCCCTGCCGCCTTACAAATGTTTTCCGACGGCGACGTCGA
GTTGGAAAATGTGGCTTTTGAAGATTTCGTGGTCCCGGCATGTAAGCATT
GTGGGGGGGTGCTAAAGCCAGCGGTTGTTTTTTATGGTGACGTCGTTCCC
ACCCCTGTGGTGGAGGAGGCGTTCGAGGCCATAGCGGCGGCGGACGCAGT
GCTGGTGGCAGGGACAAGCCTCATGGTTTATAGCAGTTGGAGATTTGTCT
CAGATGCATCGAAGAGGGGGAAAAAAATCGTCATTGTCAATCAGGGGGGA
ACGAGAGCGGAGAAAGAGGGTATAGAGCATGTGAAGGTGGAGGGGGCATG
TGGGGAGGTGCTGGGGGGGGCAGTACATTTGTTGAAGGAACGGAGGGAGG
GAAGGAGGGAGGGGTGGTAGATTACCGCTCTCCCACTGGTTCCTTCTCGC
GCGGGTTCAAGCCGATGGTTCACGACGAGTTCATCAACCATCAATTGAAA
CGCTCTCGGTACTGGGCACGTTCTATGTTAGGCTATCACCGCTTTTCGGA
GGCCAAGCCGAATGAGGGCCATCGGGCGTTGGCATCTTTGGAGAAGGACT
TGGGGATGCTCGGCTTGTTGATCAGCCAGAATGTAGATATGCGGCCCAGC
ACGGCCAGAGGCGTCATTTTCCAGGCATTTACATCCACACCGACACCTAC
AATCCGTACTTTGAGCATCTCGGCCGATGCTCACCGCGTGGCAGATTTGC
TGAGCGATTGCAAGCACGTTGTGGCGATTACCGGCGCTGGAATCAGCACC
GAGAGCGGCATTCCGGGGCCTGCACCAAAAAGCCGGCTCCGAACGCGTAC
TCGACCTCCACGGACGCAACGACCGCATCGTGTGCTTAGGGTGTGGGCAT
GAAACACATCGCCGTTCCTTTCAAGCCGCCCTTGAGGAAGAAAACAGGCA
GTGGGTGTCGACCTACGTCCCGTCCTCCCCTGCCGCCTTACAAATGTTTT
CCGACGGCGACGTCGAGTTGGAAAATGTGGCTTTTGAAGATTTCGTGGTC
CCGGCATGTAAGCATTGTGGGGGGGTGCTAAAGCCAGCGGTTGTTTTTTA
TGGTGACGTCGTTCCCACCCCTGTGGTGGAGGAGGCGTTCGAGGCCATAG
CGGCGGCGGACGCAGTGCTGGTGGCAGGGACAAGCCTCATGGTTTATAGC
AGTTGGAGATTTGTCTCAGATGCATCGAAGAGGGGGAAAAAAATCGTCAT
TGTCAATCAGGGGGGAACGAGAGCGGAGAAAGAGGGTATAGAGCATGTGA
AGGTGGAGGGGGCATGTGGGGAGGTGCTGGGGGGGGCAGTACATTTGTTG
AAGGAACGGAGGGAGGGAAGGAGGGAGGGGTGGTAGATTACCGCTCTCCC
ACTGGTTCCTTCTCGCGCGGGTTCAAGCCGATGGTTCACGACGAGTTCAT
CAACCATCAATTGAAACGCTCTCGGTACTGGGCACGTTCTATGTTAGGCT
ATCACCGCTTTTCGGAGGCCAAGCCGAATGAGGGCCATCGGGCGTTGGCA
TCTTTGGAGAAGGACTTGGGGATGCTCGGCTTGTTGATCAGCCAGAATGT
AGATATGCGGCCCAGCACGGCCAGAGGCGTCATTTTCCAGGCATTTACAT
CCACACCGACACCTACAATCCGTACTTTGAGCATCTCGGCCGATGCTCAC
CGCGTGGCAGATTTGCTGAGCGATTGCAAGCACGTTGTGGCGATTACCGG
CGCTGGAATCAGCACCGAGAGCGGCATTCCGGGGCCTGCACCAAAAAGCC
GGCTCCGAACGCGTACTCGACCTCCACGGACGCAACGACCGCATCGTGTG
CTTAGGGTGTGGGCATGAAACACATCGCCGTTCCTTTCAAGCCGCCCTTG
AGGAAGAAAACAGGCAGTGGGTGTCGACCTACGTCCCGTCCTCCCCTGCC
GCCTTACAAATGTTTTCCGACGGCGACGTCGAGTTGGAAAATGTGGCTTT
TGAAGATTTCGTGGTCCCGGCATGTAAGCATTGTGGGGGGGTGCTAAAGC
CAGCGGTTGTTTTTTATGGTGACGTCGTTCCCACCCCTGTGGTGGAGGAG
GCGTTCGAGGCCATAGCGGCGGCGGACGCAGTGCTGGTGGCAGGGACAAG
CCTCATGGTTTATAGCAGTTGGAGATTTGTCTCAGATGCATCGAAGAGGG
GGAAAAAAATCGTCATTGTCAATCAGGGGGGAACGAGAGCGGAGAAAGAG
GGTATAGAGCATGTGAAGGTGGAGGGGGCATGTGGGGAGGTGCTGGGGGG
GGCAGTACATTTGTTGAAGGAACGGAGGGAGGGAAGGAGGGAGGGGTGGT
AGATTACCGCTCTCCCACTGGTTCCTTCTCGCGCGGGTTCAAGCCGATGG
TTCACGACGAGTTCATCAACCATCAATTGAAACGCTCTCGGTACTGGGCA
CGTTCTATGTTAGGCTATCACCGCTTTTCGGAGGCCAAGCCGAATGAGGG
CCATCGGGCGTTGGCATCTTTGGAGAAGGACTTGGGGATGCTCGGCTTGT
TGATCAGCCAGAATGTAGATATGCGGCCCAGCACGGCCAGAGGCGTCATT
TTCCAGGCATTTACATCCACACCGACACCTACAATCCGTACTTTGAGCAT
CTCGGCCGATGCTCACCGCGTGGCAGATTTGCTGAGCGATTGCAAGCACG
TTGTGGCGATTACCGGCGCTGGAATCAGCACCGAGAGCGGCATTCCGG
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Synonyms
Publications