jgi.p|Nanoce1779_2|586786, mRNA_4166 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586786
Unique Name	mRNA_4166
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1624
Alignment location	scaffold_8:1004138..1006163 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586872
Track	FilteredModels2
ProteinId	586786

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:1004138..1006163 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586786	gene_4166	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586786	mRNA_4166-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4166	CDS_4166	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:1004138..1006163-
coding sequence from alignment at scaffold_8:1004138..1006163-

mRNA sequence

>mRNA_4166 ID=mRNA_4166|Name=jgi.p|Nanoce1779_2|586786|organism=Nannochloropsis oceanica|type=mRNA|length=1624bp
ACAGCCGTTCACGTCCGTTGTTGCCTACCTCTGTGCCTCGCCTCCCCTCC
TTGTCTGCGGTAGAGAGAGGCAAGCGCACAGGCACAAGAAAGAGATGATC
AGCAAAGAGATGTTGGCCGCCAGGCTGCCCCTCGACCAGCCTTGGACGAT
CTTGGCGATTGGCGTCTCCGCTGCCGTCCTGGTCTTCCTCCTCGTCACCC
TCCTCATCTCCTCCTCCGCGCGAAAAGATGCCCCCCCCGTGATTGGCAAC
GCCTGGCCAGTCTTCGGTCATTTTTTCCTCTTCCTTAAGTCGCCCATCAA
TCTTATCAAAAGCTCCTACCTCACTTACGGCAGTGTCTTTACCGTCAACC
TTTTCACGCAGAAAATGACGTTCTTGATCGGCCCCGAGGCGGCCAGTGCG
TTTTACAAGGCAAGCGACAAGGAGCTGGGGCAGGACGAGGTGTACGGTTT
CATGAAGGCGGTGTTCGGGGAAGGAGTAGTGTATGACAGTGACCCGAAAA
AGAGGAACCTCCAGATGCAACGGACGGCGAATGCGTTGAAGAGTGGGAGG
CTCCGTACGTACGTGGAGAAGATCACGGAGGAGACGGAGGTGTTCCTGAA
GGGATGGGGGGAGGAAGGGGAGGTGGACATCTGCGAGGCATTGAGTGATT
TGATTATTTTGACGGCGAGTCGGTGCTTGCATGGGGACGATGTGCGGCAG
GAGTTGTTCGCGGAGGTGTCCAAGTTGTACAATGATCTGGACCAGGGGAT
AACCCCGATCTCGGTGTTTTTCCCCAATTTGCCGATTCCCTCGCACTGGA
AAAGGGATGCCGCACGGATGGAGATGGTGAAATTGTTCTCGAAGGTGATC
CGGAAAAGGCGGGAGGAAGGAAGGGAGGAAGCGGAGGGACGGACGGACAT
CTTGCAGGTGTTCATGGACATTGAGTACAAGGATGGGAGTAAGATCACGG
ATGACGAGGTGACGGGTCTCTTGATCGCTCTGTTGTTTGCAGGACAGCAC
ACGTCATCGATCACCTCCTCCTGGACTGCTTTATATCTGGCCAAGAACAA
GGAGCTGCAGGAGAGGGTGTACCGAGAGCAGAGGGCCGTGAGGGGGGGGG
AACAGGGAGGGATGAAGACGTTGGATTTTGACGATGTGGGGAAGATGGAC
TTGTTGTTCAACTGCTTAAGAGAGACCTTGAGGATGCACCCGCCTCTGAT
CATGCTCATGCGGAAATGCAGGCAGGACCTAGTAGTCCAGTCGGAGGAGA
AGAAGACGTACACAGTGCCCAAGGGCAGCGTTGTCGCGGTCTCTCCCTCC
GTGCAGCAGCGGCTGCCGCACCTCTTCCCAAACCCCGATGCGTTTGATCC
GGACCGCTTCGCCCCGCCCAGGGAAGAGCACAAACCGTTGTTTGCCTACG
CGCCATTTGGGGGCGGGCTTCACGCGTGTCTAGGCCAACAGTTTGCTTTT
GTCCAGTTGAAGACGGTCTTGTCGCTGGTGCTGTCGAAGTATGAGTTGAC
CTTGGCCACGCCCGATGGGGAGGTGCCACCGCCCAACTACCATGCCATGG
TGGTAGGGCCCACAGCGCCGTGTACTGTTACGTACAAAAGACGGAAGTAA
AGGGAGGGAGGGAGGGAAGGATGG

protein sequence of jgi.p|Nanoce1779_2|586786

>mRNA_4166-protein ID=mRNA_4166-protein|Name=jgi.p|Nanoce1779_2|586786|organism=Nannochloropsis oceanica|type=polypeptide|length=502bp
MISKEMLAARLPLDQPWTILAIGVSAAVLVFLLVTLLISSSARKDAPPVI
GNAWPVFGHFFLFLKSPINLIKSSYLTYGSVFTVNLFTQKMTFLIGPEAA
SAFYKASDKELGQDEVYGFMKAVFGEGVVYDSDPKKRNLQMQRTANALKS
GRLRTYVEKITEETEVFLKGWGEEGEVDICEALSDLIILTASRCLHGDDV
RQELFAEVSKLYNDLDQGITPISVFFPNLPIPSHWKRDAARMEMVKLFSK
VIRKRREEGREEAEGRTDILQVFMDIEYKDGSKITDDEVTGLLIALLFAG
QHTSSITSSWTALYLAKNKELQERVYREQRAVRGGEQGGMKTLDFDDVGK
MDLLFNCLRETLRMHPPLIMLMRKCRQDLVVQSEEKKTYTVPKGSVVAVS
PSVQQRLPHLFPNPDAFDPDRFAPPREEHKPLFAYAPFGGGLHACLGQQF
AFVQLKTVLSLVLSKYELTLATPDGEVPPPNYHAMVVGPTAPCTVTYKRR
K*

mRNA from alignment at scaffold_8:1004138..1006163-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4166 ID=mRNA_4166|Name=jgi.p|Nanoce1779_2|586786|organism=Nannochloropsis oceanica|type=mRNA|length=2026bp|location=Sequence derived from alignment at scaffold_8:1004138..1006163- (Nannochloropsis oceanica)
ACAGCCGTTCACGTCCGTTGTTGCCTACCTCTGTGCCTCGCCTCCCCTCC
TTGTCTGCGGTAGAGAGAGGCAAGCGCACAGGCACAAGAAAGAGATGATC
AGCAAAGAGATGTTGGCCGCCAGGCTGCCCCTCGACCAGCCTTGGACGAT
CTTGGCGATTGGTAAGTCATGGGGGTGTAGGGGGCCAGGCATATGAGGGT
GCTTGTATGTCGGCAGATTGGGTGCTCTTCTTCCCATACTCCCGGACACG
GTGTGGCAGCACGAAAGCAGATGGATGAATAGATGCGGCGGCCGCATGAG
TGGAGAGCAAGTGATGTATTCATGTCATTTTTCTGTCAGTGTGTCTTTCC
TCGCTTCTCTTGAATGGGCGCGGGCGCAGAAGTAGTAGCGGTTCCTGGGC
ACGCCAAGCCAGCTTCTATGTCATCCGTCGCCTGCCCCCCTTCCCTAACA
TTCTTTCTTTTGGCATGTCATCATTTCAAAACCCTGGTTGCCACCCTTAT
ATTTCCGTGCCCCCTTCTTTTCCTCCCCTCCTCCGTTCTGTCCCTCCTTC
CCCTCTCCCTCAGGCGTCTCCGCTGCCGTCCTGGTCTTCCTCCTCGTCAC
CCTCCTCATCTCCTCCTCCGCGCGAAAAGATGCCCCCCCCGTGATTGGCA
ACGCCTGGCCAGTCTTCGGTCATTTTTTCCTCTTCCTTAAGTCGCCCATC
AATCTTATCAAAAGCTCCTACCTCACTTACGGCAGTGTCTTTACCGTCAA
CCTTTTCACGCAGAAAATGACGTTCTTGATCGGCCCCGAGGCGGCCAGTG
CGTTTTACAAGGCAAGCGACAAGGAGCTGGGGCAGGACGAGGTGTACGGT
TTCATGAAGGCGGTGTTCGGGGAAGGAGTAGTGTATGACAGTGACCCGAA
AAAGAGGAACCTCCAGATGCAACGGACGGCGAATGCGTTGAAGAGTGGGA
GGCTCCGTACGTACGTGGAGAAGATCACGGAGGAGACGGAGGTGTTCCTG
AAGGGATGGGGGGAGGAAGGGGAGGTGGACATCTGCGAGGCATTGAGTGA
TTTGATTATTTTGACGGCGAGTCGGTGCTTGCATGGGGACGATGTGCGGC
AGGAGTTGTTCGCGGAGGTGTCCAAGTTGTACAATGATCTGGACCAGGGG
ATAACCCCGATCTCGGTGTTTTTCCCCAATTTGCCGATTCCCTCGCACTG
GAAAAGGGATGCCGCACGGATGGAGATGGTGAAATTGTTCTCGAAGGTGA
TCCGGAAAAGGCGGGAGGAAGGAAGGGAGGAAGCGGAGGGACGGACGGAC
ATCTTGCAGGTGTTCATGGACATTGAGTACAAGGATGGGAGTAAGATCAC
GGATGACGAGGTGACGGGTCTCTTGATCGCTCTGTTGTTTGCAGGACAGC
ACACGTCATCGATCACCTCCTCCTGGACTGCTTTATATCTGGCCAAGAAC
AAGGAGCTGCAGGAGAGGGTGTACCGAGAGCAGAGGGCCGTGAGGGGGGG
GGAACAGGGAGGGATGAAGACGTTGGATTTTGACGATGTGGGGAAGATGG
ACTTGTTGTTCAACTGCTTAAGAGAGACCTTGAGGATGCACCCGCCTCTG
ATCATGCTCATGCGGAAATGCAGGCAGGACCTAGTAGTCCAGTCGGAGGA
GAAGAAGACGTACACAGTGCCCAAGGGCAGCGTTGTCGCGGTCTCTCCCT
CCGTGCAGCAGCGGCTGCCGCACCTCTTCCCAAACCCCGATGCGTTTGAT
CCGGACCGCTTCGCCCCGCCCAGGGAAGAGCACAAACCGTTGTTTGCCTA
CGCGCCATTTGGGGGCGGGCTTCACGCGTGTCTAGGCCAACAGTTTGCTT
TTGTCCAGTTGAAGACGGTCTTGTCGCTGGTGCTGTCGAAGTATGAGTTG
ACCTTGGCCACGCCCGATGGGGAGGTGCCACCGCCCAACTACCATGCCAT
GGTGGTAGGGCCCACAGCGCCGTGTACTGTTACGTACAAAAGACGGAAGT
AAAGGGAGGGAGGGAGGGAAGGATGG

Coding sequence (CDS) from alignment at scaffold_8:1004138..1006163-

>mRNA_4166 ID=mRNA_4166|Name=jgi.p|Nanoce1779_2|586786|organism=Nannochloropsis oceanica|type=CDS|length=3012bp|location=Sequence derived from alignment at scaffold_8:1004138..1006163- (Nannochloropsis oceanica)
GCGTCTCCGCTGCCGTCCTGGTCTTCCTCCTCGTCACCCTCCTCATCTCC
TCCTCCGCGCGAAAAGATGCCCCCCCCGTGATTGGCAACGCCTGGCCAGT
CTTCGGTCATTTTTTCCTCTTCCTTAAGTCGCCCATCAATCTTATCAAAA
GCTCCTACCTCACTTACGGCAGTGTCTTTACCGTCAACCTTTTCACGCAG
AAAATGACGTTCTTGATCGGCCCCGAGGCGGCCAGTGCGTTTTACAAGGC
AAGCGACAAGGAGCTGGGGCAGGACGAGGTGTACGGTTTCATGAAGGCGG
TGTTCGGGGAAGGAGTAGTGTATGACAGTGACCCGAAAAAGAGGAACCTC
CAGATGCAACGGACGGCGAATGCGTTGAAGAGTGGGAGGCTCCGTACGTA
CGTGGAGAAGATCACGGAGGAGACGGAGGTGTTCCTGAAGGGATGGGGGG
AGGAAGGGGAGGTGGACATCTGCGAGGCATTGAGTGATTTGATTATTTTG
ACGGCGAGTCGGTGCTTGCATGGGGACGATGTGCGGCAGGAGTTGTTCGC
GGAGGTGTCCAAGTTGTACAATGATCTGGACCAGGGGATAACCCCGATCT
CGGTGTTTTTCCCCAATTTGCCGATTCCCTCGCACTGGAAAAGGGATGCC
GCACGGATGGAGATGGTGAAATTGTTCTCGAAGGTGATCCGGAAAAGGCG
GGAGGAAGGAAGGGAGGAAGCGGAGGGACGGACGGACATCTTGCAGGTGT
TCATGGACATTGAGTACAAGGATGGGAGTAAGATCACGGATGACGAGGTG
ACGGGTCTCTTGATCGCTCTGTTGTTTGCAGGACAGCACACGTCATCGAT
CACCTCCTCCTGGACTGCTTTATATCTGGCCAAGAACAAGGAGCTGCAGG
AGAGGGTGTACCGAGAGCAGAGGGCCGTGAGGGGGGGGGAACAGGGAGGG
ATGAAGACGTTGGATTTTGACGATGTGGGGAAGATGGACTTGTTGTTCAA
CTGCTTAAGAGAGACCTTGAGGATGCACCCGCCTCTGATCATGCTCATGC
GGAAATGCAGGCAGGACCTAGTAGTCCAGTCGGAGGAGAAGAAGACGTAC
ACAGTGCCCAAGGGCAGCGTTGTCGCGGTCTCTCCCTCCGTGCAGCAGCG
GCTGCCGCACCTCTTCCCAAACCCCGATGCGTTTGATCCGGACCGCTTCG
CCCCGCCCAGGGAAGAGCACAAACCGTTGTTTGCCTACGCGCCATTTGGG
GGCGGGCTTCACGCGTGTCTAGGCCAACAGTTTGCTTTTGTCCAGTTGAA
GACGGTCTTGTCGCTGGTGCTGTCGAAGTATGAGTTGACCTTGGCCACGC
CCGATGGGGAGGTGCCACCGCCCAACTACCATGCCATGGTGGTAGGGCCC
ACAGCGCCGTGTACTGTTACGTACAAAAGACGGAAGTAAATGATCAGCAA
AGAGATGTTGGCCGCCAGGCTGCCCCTCGACCAGCCTTGGACGATCTTGG
CGATTGGCGTCTCCGCTGCCGTCCTGGTCTTCCTCCTCGTCACCCTCCTC
ATCTCCTCCTCCGCGCGAAAAGATGCCCCCCCCGTGATTGGCAACGCCTG
GCCAGTCTTCGGTCATTTTTTCCTCTTCCTTAAGTCGCCCATCAATCTTA
TCAAAAGCTCCTACCTCACTTACGGCAGTGTCTTTACCGTCAACCTTTTC
ACGCAGAAAATGACGTTCTTGATCGGCCCCGAGGCGGCCAGTGCGTTTTA
CAAGGCAAGCGACAAGGAGCTGGGGCAGGACGAGGTGTACGGTTTCATGA
AGGCGGTGTTCGGGGAAGGAGTAGTGTATGACAGTGACCCGAAAAAGAGG
AACCTCCAGATGCAACGGACGGCGAATGCGTTGAAGAGTGGGAGGCTCCG
TACGTACGTGGAGAAGATCACGGAGGAGACGGAGGTGTTCCTGAAGGGAT
GGGGGGAGGAAGGGGAGGTGGACATCTGCGAGGCATTGAGTGATTTGATT
ATTTTGACGGCGAGTCGGTGCTTGCATGGGGACGATGTGCGGCAGGAGTT
GTTCGCGGAGGTGTCCAAGTTGTACAATGATCTGGACCAGGGGATAACCC
CGATCTCGGTGTTTTTCCCCAATTTGCCGATTCCCTCGCACTGGAAAAGG
GATGCCGCACGGATGGAGATGGTGAAATTGTTCTCGAAGGTGATCCGGAA
AAGGCGGGAGGAAGGAAGGGAGGAAGCGGAGGGACGGACGGACATCTTGC
AGGTGTTCATGGACATTGAGTACAAGGATGGGAGTAAGATCACGGATGAC
GAGGTGACGGGTCTCTTGATCGCTCTGTTGTTTGCAGGACAGCACACGTC
ATCGATCACCTCCTCCTGGACTGCTTTATATCTGGCCAAGAACAAGGAGC
TGCAGGAGAGGGTGTACCGAGAGCAGAGGGCCGTGAGGGGGGGGGAACAG
GGAGGGATGAAGACGTTGGATTTTGACGATGTGGGGAAGATGGACTTGTT
GTTCAACTGCTTAAGAGAGACCTTGAGGATGCACCCGCCTCTGATCATGC
TCATGCGGAAATGCAGGCAGGACCTAGTAGTCCAGTCGGAGGAGAAGAAG
ACGTACACAGTGCCCAAGGGCAGCGTTGTCGCGGTCTCTCCCTCCGTGCA
GCAGCGGCTGCCGCACCTCTTCCCAAACCCCGATGCGTTTGATCCGGACC
GCTTCGCCCCGCCCAGGGAAGAGCACAAACCGTTGTTTGCCTACGCGCCA
TTTGGGGGCGGGCTTCACGCGTGTCTAGGCCAACAGTTTGCTTTTGTCCA
GTTGAAGACGGTCTTGTCGCTGGTGCTGTCGAAGTATGAGTTGACCTTGG
CCACGCCCGATGGGGAGGTGCCACCGCCCAACTACCATGCCATGGTGGTA
GGGCCCACAGCGCCGTGTACTGTTACGTACAAAAGACGGAAGTAAATGAT
CAGCAAAGAGATGTTGGCCGCCAGGCTGCCCCTCGACCAGCCTTGGACGA
TCTTGGCGATTG

Synonyms

Publications