jgi.p|Nanoce1779_2|586784, mRNA_4165 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586784
Unique Name	mRNA_4165
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1804
Alignment location	scaffold_8:1001900..1003703 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586870
Track	FilteredModels2
ProteinId	586784

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:1001900..1003703 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586784	gene_4165	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586784	mRNA_4165-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4165	CDS_4165	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:1001900..1003703+
coding sequence from alignment at scaffold_8:1001900..1003703+

mRNA sequence

>mRNA_4165 ID=mRNA_4165|Name=jgi.p|Nanoce1779_2|586784|organism=Nannochloropsis oceanica|type=mRNA|length=1804bp
ACAGGCAAAGGACTACCTATCTCGCAGGCCCTTAACCCGGAGCCATGGAG
CTCATTGGGTCGGTCTTAATGACCTACACCCTTGCCCGCTTCAATTCTAT
CGAGGATTTCAACCTCGCGCACCGCCTTTTAAACAAGCTGCGATTCTGGG
TACCGCCCAGCGAGGAGGACGTGCAGCGCATAATGAAACCGGGAAAGACC
TCTTCCTCTTCCTCCACGTCCTCTAAGTCCACGACATTGAGCAGCAAATT
CGCACGCCGTTCCAACAAAGACAAGGACAAGGACAAAAATGGCTGCGGTA
GCGCGGGCAAAAAAGCGGGGGAGAAGCTGCACATGACGGCAGCAGACCGC
GTTGAGCAATTGGAATTGAAGCAGGCCTTGGTGCAACAGGGCATGTTGCT
GCGCTACCGCGACTGGCCTCTACTTGATCGAATTATTATCTTCTCCTGTT
TAGCTGTTTTCATGACGGGCTGGCAAGAGTTGTATCGGTTCGCGCACCCG
AACGTGCGTCTGTTTAAGATTGGCAGTTTATTTACAGGCATTGCCGCAGC
CGTTGCTTTGGGCACGTTGGTGGACCTGGTGTGGAAGCGCAGAGCATCTC
GCACGGCGACGACGGGTGATTTTCACACGGCGGTGGCGTGGATGACGGGG
ATTGTGGCGGTGATCGCCTCATCGACCATGCTGTTGCTGCCAAAAGATGG
CGGGGGTCTGATGACAATGACGTTTCATTTAGACTCTGTCATACAGGCGC
TGGGGACGCAATGCTATTCGTTCTGTGTGGATATTGTGGGGATAAGTCCA
ACGTCTTCTTTTCTTATCGCTGCTGGAGAAGGGGACAAGCAATGTCCCAC
CCAAGGATTGACGCGTCTGCTGCTCGTGGTGGTGGCAGCTGTCATTGCCA
TCGCGCACGTCCCTTCTGCCTTGACCGCATCCTTCGCATTCGTCCATCAA
TACAAACTCCCTGGGCGGGCGCGTGGAAGCAGACTCGTGCGTATTGCCGT
TTACTTGGAGCCTTTGCTCTGTCCTCTCTACTGTCTGACTTTCGTGAAGC
CCTTGGGTTTAGGCCTCCTGCAAGACAAGCTCGCCTCCTGTCCCTCTGCC
TCCCCCCCGCCCTCCTGGCTCCTCTCCCTGGGCACAGAGATCGGTTGGCT
GCACATGCAAGTGTGGATGCTCACGTTTCTAATGGCACTGCGGTTGGTGC
TGCTGAGATGGCAACTGCAGACCTACTTAGAGTATGGCTCCGTTCTTGCC
CTCTATCAAGAGCTGCACCGCGCGGGCCCCAAACCTGAAGATATTGACGC
CCTCGGTGTCCGTCTTCTTTTCCAGCATCGTTTCCAAAAGCTTCCTCTTA
TCTGTCTGGAACTCGTCGCTCCGCTCGTCTGGCTGGGGATCTGTCTATTT
TTGTTGGTGAGCAAGTGCTTTCTTCCTTCCTTCCTCGATGGGCTTGCGGC
CTCTGTGATGAATCAAGATGCGGCGGCTGCTTTTCGCTCTCCGACCTCCA
AACCCTTAGGAGGGAGCATTGTCTCGATCCTGGACAAGCTCCGCAGCGAG
AAAGGGGAGGAAAAGTATATTGATTGGGCATTGGGGAGGGATATCATGCA
TGTTTTATGGGGCTTTGAATGGTGGAGCGCGAGTGAATGGGCGGACGCGG
TAGGGTTCCTAGCTTGGTGGTCTGTGAGTGCGTGGACGGGTCTGTACCTT
GTGTGTATCGCCTGGAGGATGCTGAATCCGCAGATGGGGGATAGGTAGGC
AGGAGAAAGGAGTGGAGAAGGGGAAGGAGGGACGGAGGGGGTGTTTGTTT
TGTG

protein sequence of jgi.p|Nanoce1779_2|586784

>mRNA_4165-protein ID=mRNA_4165-protein|Name=jgi.p|Nanoce1779_2|586784|organism=Nannochloropsis oceanica|type=polypeptide|length=568bp
MELIGSVLMTYTLARFNSIEDFNLAHRLLNKLRFWVPPSEEDVQRIMKPG
KTSSSSSTSSKSTTLSSKFARRSNKDKDKDKNGCGSAGKKAGEKLHMTAA
DRVEQLELKQALVQQGMLLRYRDWPLLDRIIIFSCLAVFMTGWQELYRFA
HPNVRLFKIGSLFTGIAAAVALGTLVDLVWKRRASRTATTGDFHTAVAWM
TGIVAVIASSTMLLLPKDGGGLMTMTFHLDSVIQALGTQCYSFCVDIVGI
SPTSSFLIAAGEGDKQCPTQGLTRLLLVVVAAVIAIAHVPSALTASFAFV
HQYKLPGRARGSRLVRIAVYLEPLLCPLYCLTFVKPLGLGLLQDKLASCP
SASPPPSWLLSLGTEIGWLHMQVWMLTFLMALRLVLLRWQLQTYLEYGSV
LALYQELHRAGPKPEDIDALGVRLLFQHRFQKLPLICLELVAPLVWLGIC
LFLLVSKCFLPSFLDGLAASVMNQDAAAAFRSPTSKPLGGSIVSILDKLR
SEKGEEKYIDWALGRDIMHVLWGFEWWSASEWADAVGFLAWWSVSAWTGL
YLVCIAWRMLNPQMGDR*

mRNA from alignment at scaffold_8:1001900..1003703+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4165 ID=mRNA_4165|Name=jgi.p|Nanoce1779_2|586784|organism=Nannochloropsis oceanica|type=mRNA|length=1804bp|location=Sequence derived from alignment at scaffold_8:1001900..1003703+ (Nannochloropsis oceanica)
ACAGGCAAAGGACTACCTATCTCGCAGGCCCTTAACCCGGAGCCATGGAG
CTCATTGGGTCGGTCTTAATGACCTACACCCTTGCCCGCTTCAATTCTAT
CGAGGATTTCAACCTCGCGCACCGCCTTTTAAACAAGCTGCGATTCTGGG
TACCGCCCAGCGAGGAGGACGTGCAGCGCATAATGAAACCGGGAAAGACC
TCTTCCTCTTCCTCCACGTCCTCTAAGTCCACGACATTGAGCAGCAAATT
CGCACGCCGTTCCAACAAAGACAAGGACAAGGACAAAAATGGCTGCGGTA
GCGCGGGCAAAAAAGCGGGGGAGAAGCTGCACATGACGGCAGCAGACCGC
GTTGAGCAATTGGAATTGAAGCAGGCCTTGGTGCAACAGGGCATGTTGCT
GCGCTACCGCGACTGGCCTCTACTTGATCGAATTATTATCTTCTCCTGTT
TAGCTGTTTTCATGACGGGCTGGCAAGAGTTGTATCGGTTCGCGCACCCG
AACGTGCGTCTGTTTAAGATTGGCAGTTTATTTACAGGCATTGCCGCAGC
CGTTGCTTTGGGCACGTTGGTGGACCTGGTGTGGAAGCGCAGAGCATCTC
GCACGGCGACGACGGGTGATTTTCACACGGCGGTGGCGTGGATGACGGGG
ATTGTGGCGGTGATCGCCTCATCGACCATGCTGTTGCTGCCAAAAGATGG
CGGGGGTCTGATGACAATGACGTTTCATTTAGACTCTGTCATACAGGCGC
TGGGGACGCAATGCTATTCGTTCTGTGTGGATATTGTGGGGATAAGTCCA
ACGTCTTCTTTTCTTATCGCTGCTGGAGAAGGGGACAAGCAATGTCCCAC
CCAAGGATTGACGCGTCTGCTGCTCGTGGTGGTGGCAGCTGTCATTGCCA
TCGCGCACGTCCCTTCTGCCTTGACCGCATCCTTCGCATTCGTCCATCAA
TACAAACTCCCTGGGCGGGCGCGTGGAAGCAGACTCGTGCGTATTGCCGT
TTACTTGGAGCCTTTGCTCTGTCCTCTCTACTGTCTGACTTTCGTGAAGC
CCTTGGGTTTAGGCCTCCTGCAAGACAAGCTCGCCTCCTGTCCCTCTGCC
TCCCCCCCGCCCTCCTGGCTCCTCTCCCTGGGCACAGAGATCGGTTGGCT
GCACATGCAAGTGTGGATGCTCACGTTTCTAATGGCACTGCGGTTGGTGC
TGCTGAGATGGCAACTGCAGACCTACTTAGAGTATGGCTCCGTTCTTGCC
CTCTATCAAGAGCTGCACCGCGCGGGCCCCAAACCTGAAGATATTGACGC
CCTCGGTGTCCGTCTTCTTTTCCAGCATCGTTTCCAAAAGCTTCCTCTTA
TCTGTCTGGAACTCGTCGCTCCGCTCGTCTGGCTGGGGATCTGTCTATTT
TTGTTGGTGAGCAAGTGCTTTCTTCCTTCCTTCCTCGATGGGCTTGCGGC
CTCTGTGATGAATCAAGATGCGGCGGCTGCTTTTCGCTCTCCGACCTCCA
AACCCTTAGGAGGGAGCATTGTCTCGATCCTGGACAAGCTCCGCAGCGAG
AAAGGGGAGGAAAAGTATATTGATTGGGCATTGGGGAGGGATATCATGCA
TGTTTTATGGGGCTTTGAATGGTGGAGCGCGAGTGAATGGGCGGACGCGG
TAGGGTTCCTAGCTTGGTGGTCTGTGAGTGCGTGGACGGGTCTGTACCTT
GTGTGTATCGCCTGGAGGATGCTGAATCCGCAGATGGGGGATAGGTAGGC
AGGAGAAAGGAGTGGAGAAGGGGAAGGAGGGACGGAGGGGGTGTTTGTTT
TGTG

Coding sequence (CDS) from alignment at scaffold_8:1001900..1003703+

>mRNA_4165 ID=mRNA_4165|Name=jgi.p|Nanoce1779_2|586784|organism=Nannochloropsis oceanica|type=CDS|length=1704bp|location=Sequence derived from alignment at scaffold_8:1001900..1003703+ (Nannochloropsis oceanica)
ATGGAGCTCATTGGGTCGGTCTTAATGACCTACACCCTTGCCCGCTTCAA
TTCTATCGAGGATTTCAACCTCGCGCACCGCCTTTTAAACAAGCTGCGAT
TCTGGGTACCGCCCAGCGAGGAGGACGTGCAGCGCATAATGAAACCGGGA
AAGACCTCTTCCTCTTCCTCCACGTCCTCTAAGTCCACGACATTGAGCAG
CAAATTCGCACGCCGTTCCAACAAAGACAAGGACAAGGACAAAAATGGCT
GCGGTAGCGCGGGCAAAAAAGCGGGGGAGAAGCTGCACATGACGGCAGCA
GACCGCGTTGAGCAATTGGAATTGAAGCAGGCCTTGGTGCAACAGGGCAT
GTTGCTGCGCTACCGCGACTGGCCTCTACTTGATCGAATTATTATCTTCT
CCTGTTTAGCTGTTTTCATGACGGGCTGGCAAGAGTTGTATCGGTTCGCG
CACCCGAACGTGCGTCTGTTTAAGATTGGCAGTTTATTTACAGGCATTGC
CGCAGCCGTTGCTTTGGGCACGTTGGTGGACCTGGTGTGGAAGCGCAGAG
CATCTCGCACGGCGACGACGGGTGATTTTCACACGGCGGTGGCGTGGATG
ACGGGGATTGTGGCGGTGATCGCCTCATCGACCATGCTGTTGCTGCCAAA
AGATGGCGGGGGTCTGATGACAATGACGTTTCATTTAGACTCTGTCATAC
AGGCGCTGGGGACGCAATGCTATTCGTTCTGTGTGGATATTGTGGGGATA
AGTCCAACGTCTTCTTTTCTTATCGCTGCTGGAGAAGGGGACAAGCAATG
TCCCACCCAAGGATTGACGCGTCTGCTGCTCGTGGTGGTGGCAGCTGTCA
TTGCCATCGCGCACGTCCCTTCTGCCTTGACCGCATCCTTCGCATTCGTC
CATCAATACAAACTCCCTGGGCGGGCGCGTGGAAGCAGACTCGTGCGTAT
TGCCGTTTACTTGGAGCCTTTGCTCTGTCCTCTCTACTGTCTGACTTTCG
TGAAGCCCTTGGGTTTAGGCCTCCTGCAAGACAAGCTCGCCTCCTGTCCC
TCTGCCTCCCCCCCGCCCTCCTGGCTCCTCTCCCTGGGCACAGAGATCGG
TTGGCTGCACATGCAAGTGTGGATGCTCACGTTTCTAATGGCACTGCGGT
TGGTGCTGCTGAGATGGCAACTGCAGACCTACTTAGAGTATGGCTCCGTT
CTTGCCCTCTATCAAGAGCTGCACCGCGCGGGCCCCAAACCTGAAGATAT
TGACGCCCTCGGTGTCCGTCTTCTTTTCCAGCATCGTTTCCAAAAGCTTC
CTCTTATCTGTCTGGAACTCGTCGCTCCGCTCGTCTGGCTGGGGATCTGT
CTATTTTTGTTGGTGAGCAAGTGCTTTCTTCCTTCCTTCCTCGATGGGCT
TGCGGCCTCTGTGATGAATCAAGATGCGGCGGCTGCTTTTCGCTCTCCGA
CCTCCAAACCCTTAGGAGGGAGCATTGTCTCGATCCTGGACAAGCTCCGC
AGCGAGAAAGGGGAGGAAAAGTATATTGATTGGGCATTGGGGAGGGATAT
CATGCATGTTTTATGGGGCTTTGAATGGTGGAGCGCGAGTGAATGGGCGG
ACGCGGTAGGGTTCCTAGCTTGGTGGTCTGTGAGTGCGTGGACGGGTCTG
TACCTTGTGTGTATCGCCTGGAGGATGCTGAATCCGCAGATGGGGGATAG
GTAG

Synonyms

Publications