jgi.p|Nanoce1779_2|586782, mRNA_4163 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586782
Unique NamemRNA_4163
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2233
Alignment locationscaffold_8:999216..1001594 -

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Properties
Property NameValue
TranscriptId586868
TrackFilteredModels2
ProteinId586782
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:999216..1001594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586782gene_4163Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586782mRNA_4163-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4163CDS_4163Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4163 ID=mRNA_4163|Name=jgi.p|Nanoce1779_2|586782|organism=Nannochloropsis oceanica|type=mRNA|length=2233bp
CAGATAGACACCCAGAAATAATCACCGGAACACGCCTGCGAACTGGTGCT
GGGTGGCGCCTCCCGTAGAACAAAGCCAAGGCTAAGACGCCTTGCCTTGA
CCCACACAAAGCCGTCGTTGACTTATGCAGCTATCCACTATGTGGCTATT
TCCATTGCCTTGCAAAGTACACTAGTAGAGCTATATTTATACATCCCCAT
GCCCAGCAAACCTGGCTGTTTCTCTATGCACGCTGTTCACCCCAAAGCCT
TGTTTCATCCAGCCTTCCCTTTTTTCGTCGCTGTATCCCTCTCTCCCTTC
CCCTTTCCTGCTCTTCCTATATCTACTTGCTCACCGACGGATCCAATTTC
AAAGTTGGATACATTACCGGCCTTAACGGCGAGGCCTCCTGTGTCGTCGC
CCCTATATGTGGGTACCTTGCCGACAGGCATCGACGAGACAGGATATTGA
GGTCAGCAGGAGTAGTAGGAATACTAGTCAGCATTGCGACGATTGCTGGG
ATTTTAGAAGGACAATATACAGCTTTATACGCGTGTTTGGTTGGCTGGGG
GGTGTATATGGGTATGCAGAATCCGCCGATGGAGGCGTTGTTTGCTGATT
CGAATGACCCAGGACAGAGGTCCAAGATATTCACGTGGAAGTATGGCTTG
GTGCAAGCGGGGTGTGCTATCGGCCCATTGTGTAGTGTGATGATGTTTTG
GATCTTGGGAAATGAATGGATCTTGGAGGCTTGTCAGTATGTGATCGTGG
CGGGGATGGTATTGGTGCTCTTATCGACGACATTGTGTTTTCGGTTTGAT
GACGAAAAGGACCATTTGACCTTGTCCCCTGCGACTCGGGCAGCAGTGCG
ACGGGTGGCTTCAAAGAGACGACAAGAGATTGAAGGGGGGAAGAGTAGAC
AGGTTTTGGTAGGAGAAGAGCAGAGTCGGAGTCGTGCGGTCCTGGTGGAG
GGGAAAAAGGAGGAGGGGGAGGAAGAGTTGATGCAGCACCACGCAACGGC
CGGCATGGAATGCTTTTACGTCTAGGCTTTCGCGGATGGATGGGGCTAGC
TCTGCCTTGATGGTACCTTTACTACAACCAAACGAGGAGGAGTTTGATGA
GGACGAATCAAAAGGGCAGCAACGACAAGTAGCAACAGAATTGACCAAAA
AATGCTGCTTAGGATGTACGGCCAGGAGAGGTTCCTTCTGTTTTACGAAT
TACCTGCCAAGCATTATCGTCTTGACGGACGTGTGCTTCGGTCTTGCCTC
CGGCATGTCTGTCCAATTCTTCCCCCTCTTTTTCATGGAAGCCTACAACC
TTTCTCCTATGGCCATCTCGGGCATCTATGTGCTCTCCCCGCTCCTCACC
TCGCTTGCCTCCTTCTGTGCCCAGCGCCTTTCACACCACCTAGGACGGGT
CATCACCACTGTAACCTGCAAGCTCCTCGGAGTCTCCTTTCTTTTCCTTA
TGTGCTTCCTGGATTACCAGCACGCGAGCGCCCTATCTTATCCCTGTGTA
TATCACGAGGACGGCCTTAATGAACTCAACCAAGCCCTTGACCTGATCCA
TCATCATGGACTCTGTCCCAAAGGAAGACAGGGGGAAGTGGAATAGTCTG
GAGAGTGTCACCATGGCGACTTGGAGTGGCTCGGCCGTGATAGGAGGGTT
GTTGGTCGATAGGTATGGATTTTTGTTCAACAACTTGATCACCGCGTCCT
TGCAGCTAGTGAGTACCCTCCCGTTGTTTCTGGTGTTGGGCCTGGTGCCC
TGTGAGAGGAATGGTGGGGGGGGAATGGAAGAAGAGGAGGAAGAGGGGTG
GAGGAAGGACAAGGAAGAAACAGAGATGGATTTGTCACATGGATGGGAAT
TAGGAGCGAGTTTTTCGAATTTCTTTTTTGGGACCATCCCGCCGACATTG
GGCAGTGCAGGGAGTGTGAAGAAAGTATTGGAGGGATGGGGGGATGAAGA
AAGTGCGAGTGCTGCGTGGGATGAGCAGTTGCGGGAGCAGCGGGCGTGGT
TTAAGGGAGGAAGGGAGGAGGAGATGTCATTGCCATTGGATGGGGATGAG
GACTTGGCTGTGTTGGAGAGGGTTTTGGAGAGGGGAAGAAGCCGGGCGGG
CACGGTGGAAGACGTGGAGCTCTGAGGAGGGAGAAAGGGAGGAAGGAGGG
AGGGAAGGAGATCGATCGATCTTACATTCGCTATGTAATCTTTGTATGTA
CCGGTGTACGTAATGCATGAAAAAAATAGCAAT
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protein sequence of jgi.p|Nanoce1779_2|586782

>mRNA_4163-protein ID=mRNA_4163-protein|Name=jgi.p|Nanoce1779_2|586782|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MDGASSALMVPLLQPNEEEFDEDESKGQQRQVATELTKKCCLGCTARRGS
FCFTNYLPSIIVLTDVCFGLASGMSVQFFPLFFMEAYNLSPMAISGIYVL
SPLLTSLASFCAQRLSHHLGRVITTVTCKLLGVSFLFLMCFLDYQHASAL
SYPCVYHEDGLNELNQALDLIHHHGLCPKGRQGEVE*
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mRNA from alignment at scaffold_8:999216..1001594-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4163 ID=mRNA_4163|Name=jgi.p|Nanoce1779_2|586782|organism=Nannochloropsis oceanica|type=mRNA|length=2379bp|location=Sequence derived from alignment at scaffold_8:999216..1001594- (Nannochloropsis oceanica)
CAGATAGACACCCAGAAATAATCACCGGAACACGCCTGCGAACTGGTGCT
GGGTGGCGCCTCCCGTAGAACAAAGCCAAGGCTAAGACGCCTTGCCTTGA
CCCACACAAAGCCGTCGTTGACTTATGCAGCTATCCACTATGTGGCTATT
TCCATTGCCTTGCAAAGTGTATGTACATGTAGGGTAGGAGCTAGAATCTT
GGACTGACCAATCCACATGTACCGATCCTCCAGACCTCCACTGACACATT
GCACTATCTTTTTATACACGAGTCTTCACCACTACTCATCAAGCTTTCCT
TATTTTCCCTCCAGACACTAGTAGAGCTATATTTATACATCCCCATGCCC
AGCAAACCTGGCTGTTTCTCTATGCACGCTGTTCACCCCAAAGCCTTGTT
TCATCCAGCCTTCCCTTTTTTCGTCGCTGTATCCCTCTCTCCCTTCCCCT
TTCCTGCTCTTCCTATATCTACTTGCTCACCGACGGATCCAATTTCAAAG
TTGGATACATTACCGGCCTTAACGGCGAGGCCTCCTGTGTCGTCGCCCCT
ATATGTGGGTACCTTGCCGACAGGCATCGACGAGACAGGATATTGAGGTC
AGCAGGAGTAGTAGGAATACTAGTCAGCATTGCGACGATTGCTGGGATTT
TAGAAGGACAATATACAGCTTTATACGCGTGTTTGGTTGGCTGGGGGGTG
TATATGGGTATGCAGAATCCGCCGATGGAGGCGTTGTTTGCTGATTCGAA
TGACCCAGGACAGAGGTCCAAGATATTCACGTGGAAGTATGGCTTGGTGC
AAGCGGGGTGTGCTATCGGCCCATTGTGTAGTGTGATGATGTTTTGGATC
TTGGGAAATGAATGGATCTTGGAGGCTTGTCAGTATGTGATCGTGGCGGG
GATGGTATTGGTGCTCTTATCGACGACATTGTGTTTTCGGTTTGATGACG
AAAAGGACCATTTGACCTTGTCCCCTGCGACTCGGGCAGCAGTGCGACGG
GTGGCTTCAAAGAGACGACAAGAGATTGAAGGGGGGAAGAGTAGACAGGT
TTTGGTAGGAGAAGAGCAGAGTCGGAGTCGTGCGGTCCTGGTGGAGGGGA
AAAAGGAGGAGGGGGAGGAAGAGTTGATGCAGCACCACGCAACGGCCGGC
ATGGAATGCTTTTACGTCTAGGCTTTCGCGGATGGATGGGGCTAGCTCTG
CCTTGATGGTACCTTTACTACAACCAAACGAGGAGGAGTTTGATGAGGAC
GAATCAAAAGGGCAGCAACGACAAGTAGCAACAGAATTGACCAAAAAATG
CTGCTTAGGATGTACGGCCAGGAGAGGTTCCTTCTGTTTTACGAATTACC
TGCCAAGCATTATCGTCTTGACGGACGTGTGCTTCGGTCTTGCCTCCGGC
ATGTCTGTCCAATTCTTCCCCCTCTTTTTCATGGAAGCCTACAACCTTTC
TCCTATGGCCATCTCGGGCATCTATGTGCTCTCCCCGCTCCTCACCTCGC
TTGCCTCCTTCTGTGCCCAGCGCCTTTCACACCACCTAGGACGGGTCATC
ACCACTGTAACCTGCAAGCTCCTCGGAGTCTCCTTTCTTTTCCTTATGTG
CTTCCTGGATTACCAGCACGCGAGCGCCCTATCTTATCCCTGTGTATATC
ACGAGGACGGCCTTAATGAACTCAACCAAGCCCTTGACCTGATCCATCAT
CATGGACTCTGTCCCAAAGGAAGACAGGGGGAAGTGGAATAGTCTGGAGA
GTGTCACCATGGCGACTTGGAGTGGCTCGGCCGTGATAGGAGGGTTGTTG
GTCGATAGGTATGGATTTTTGTTCAACAACTTGATCACCGCGTCCTTGCA
GCTAGTGAGTACCCTCCCGTTGTTTCTGGTGTTGGGCCTGGTGCCCTGTG
AGAGGAATGGTGGGGGGGGAATGGAAGAAGAGGAGGAAGAGGGGTGGAGG
AAGGACAAGGAAGAAACAGAGATGGATTTGTCACATGGATGGGAATTAGG
AGCGAGTTTTTCGAATTTCTTTTTTGGGACCATCCCGCCGACATTGGGCA
GTGCAGGGAGTGTGAAGAAAGTATTGGAGGGATGGGGGGATGAAGAAAGT
GCGAGTGCTGCGTGGGATGAGCAGTTGCGGGAGCAGCGGGCGTGGTTTAA
GGGAGGAAGGGAGGAGGAGATGTCATTGCCATTGGATGGGGATGAGGACT
TGGCTGTGTTGGAGAGGGTTTTGGAGAGGGGAAGAAGCCGGGCGGGCACG
GTGGAAGACGTGGAGCTCTGAGGAGGGAGAAAGGGAGGAAGGAGGGAGGG
AAGGAGATCGATCGATCTTACATTCGCTATGTAATCTTTGTATGTACCGG
TGTACGTAATGCATGAAAAAAATAGCAAT
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Coding sequence (CDS) from alignment at scaffold_8:999216..1001594-

>mRNA_4163 ID=mRNA_4163|Name=jgi.p|Nanoce1779_2|586782|organism=Nannochloropsis oceanica|type=CDS|length=561bp|location=Sequence derived from alignment at scaffold_8:999216..1001594- (Nannochloropsis oceanica)
ATGGATGGGGCTAGCTCTGCCTTGATGGTACCTTTACTACAACCAAACGA
GGAGGAGTTTGATGAGGACGAATCAAAAGGGCAGCAACGACAAGTAGCAA
CAGAATTGACCAAAAAATGCTGCTTAGGATGTACGGCCAGGAGAGGTTCC
TTCTGTTTTACGAATTACCTGCCAAGCATTATCGTCTTGACGGACGTGTG
CTTCGGTCTTGCCTCCGGCATGTCTGTCCAATTCTTCCCCCTCTTTTTCA
TGGAAGCCTACAACCTTTCTCCTATGGCCATCTCGGGCATCTATGTGCTC
TCCCCGCTCCTCACCTCGCTTGCCTCCTTCTGTGCCCAGCGCCTTTCACA
CCACCTAGGACGGGTCATCACCACTGTAACCTGCAAGCTCCTCGGAGTCT
CCTTTCTTTTCCTTATGTGCTTCCTGGATTACCAGCACGCGAGCGCCCTA
TCTTATCCCTGTGTATATCACGAGGACGGCCTTAATGAACTCAACCAAGC
CCTTGACCTGATCCATCATCATGGACTCTGTCCCAAAGGAAGACAGGGGG
AAGTGGAATAG
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Synonyms
Publications