jgi.p|Nanoce1779_2|638690, mRNA_4162 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|638690
Unique Name	mRNA_4162
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1137
Alignment location	scaffold_8:997933..999069 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	638776
Track	FilteredModels2
ProteinId	638690

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:997933..999069 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|638690	gene_4162	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|638690	mRNA_4162-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4162	CDS_4162	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:997933..999069+
coding sequence from alignment at scaffold_8:997933..999069+

mRNA sequence

>mRNA_4162 ID=mRNA_4162|Name=jgi.p|Nanoce1779_2|638690|organism=Nannochloropsis oceanica|type=mRNA|length=1137bp
ATGGCGTCCCATACATCAAATACGATCAAACTCACTGAGGGTAGCAAGCG
GTACACTGCGCTGTGGCCCAAGCCGCCTGTGGGCGACGTAGACCTTGCTG
CCACACGCGCGACAGTGGAGTACATGTCCCGTCTCGTCGGCGGCCGTGTC
TTGCCCATGCGTCGTGTGGAAGACATTCCGCTCACCTCTCTCGATGGATC
TAGCCCTTTTTTTGTCCGCAACTACTTCCCCACTCTTCTTGAAGAAGATA
AGGTGGGCGAGCAGAAGTTGGGCGTCATTCTGTATTCCCACGGGGGCGGA
GGAATGGTGGGCAGCGTGGCCTCCTACGACTCCATGTGCCGACGGATCGC
CGCCACCTGTCACATGGCCGTCGTCTCGGTGGACTACCGCCTGACACCCG
AGCACCCTTACCCCGCCGCCTTAGAAGACATGGAAGCTGCCTTTCAATTG
GTCGTCAATGATTTGGTCATGAGGCAGTACCCCGAGGTACTGGACCCGGG
GAAGGTGGTGCTGATGGGGGACTCCTTCGGAGGGCACCTGGCCGCCTCGC
TGCTGCTCCGCCTGCACAGAAAGGAAGAGTACAAGCAGAGCATCAAGCCG
AAAGCTTGTGTCTTAATCTATCCGAGCGTGGATATGAAAAATGCGCGACA
TCCGTCCTTCTCGACCCATGCGAACGTTAGCCACTTAACGCCGGAAATGA
TTAATATGTTCTTCAATGCCTACCTGCCTGATAAAAATGGGAATGGTACT
AGTAGTAGTAGTAGTAGTAGTAGTAGAAGTGATCATTATAGCGGTAGTAG
TAGTAGCAGCAGCAGCAGCTGTAATGGCAATGGCTGCAGCAATAATACGG
AAGGCCTCTTCCAAGAAGAGCTCCGACTAGATCCTGATGTATCAGTGCTC
TATTCCACCCATTTACACCTCTTTCCCCCTACCCTCGTCCTCAGCGCGGC
CTGTGACCCTTTGATAGACGAAGGCATCTTGTTCGTCAAGCGATTGAGAG
AGGAGAAAGTGGATGTCCGGCATGTGATATATCCCGAGATAATTCACGGC
TTCTTTTCAGGCTATGATATGTTCCCGGAGGCGGAAATGGCATTGGGAGA
GACTGCAAATTTCTTGAAGGAGGGCTTGAGATTGTGA

protein sequence of jgi.p|Nanoce1779_2|638690

>mRNA_4162-protein ID=mRNA_4162-protein|Name=jgi.p|Nanoce1779_2|638690|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MASHTSNTIKLTEGSKRYTALWPKPPVGDVDLAATRATVEYMSRLVGGRV
LPMRRVEDIPLTSLDGSSPFFVRNYFPTLLEEDKVGEQKLGVILYSHGGG
GMVGSVASYDSMCRRIAATCHMAVVSVDYRLTPEHPYPAALEDMEAAFQL
VVNDLVMRQYPEVLDPGKVVLMGDSFGGHLAASLLLRLHRKEEYKQSIKP
KACVLIYPSVDMKNARHPSFSTHANVSHLTPEMINMFFNAYLPDKNGNGT
SSSSSSSSRSDHYSGSSSSSSSSCNGNGCSNNTEGLFQEELRLDPDVSVL
YSTHLHLFPPTLVLSAACDPLIDEGILFVKRLREEKVDVRHVIYPEIIHG
FFSGYDMFPEAEMALGETANFLKEGLRL*

mRNA from alignment at scaffold_8:997933..999069+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4162 ID=mRNA_4162|Name=jgi.p|Nanoce1779_2|638690|organism=Nannochloropsis oceanica|type=mRNA|length=1137bp|location=Sequence derived from alignment at scaffold_8:997933..999069+ (Nannochloropsis oceanica)
ATGGCGTCCCATACATCAAATACGATCAAACTCACTGAGGGTAGCAAGCG
GTACACTGCGCTGTGGCCCAAGCCGCCTGTGGGCGACGTAGACCTTGCTG
CCACACGCGCGACAGTGGAGTACATGTCCCGTCTCGTCGGCGGCCGTGTC
TTGCCCATGCGTCGTGTGGAAGACATTCCGCTCACCTCTCTCGATGGATC
TAGCCCTTTTTTTGTCCGCAACTACTTCCCCACTCTTCTTGAAGAAGATA
AGGTGGGCGAGCAGAAGTTGGGCGTCATTCTGTATTCCCACGGGGGCGGA
GGAATGGTGGGCAGCGTGGCCTCCTACGACTCCATGTGCCGACGGATCGC
CGCCACCTGTCACATGGCCGTCGTCTCGGTGGACTACCGCCTGACACCCG
AGCACCCTTACCCCGCCGCCTTAGAAGACATGGAAGCTGCCTTTCAATTG
GTCGTCAATGATTTGGTCATGAGGCAGTACCCCGAGGTACTGGACCCGGG
GAAGGTGGTGCTGATGGGGGACTCCTTCGGAGGGCACCTGGCCGCCTCGC
TGCTGCTCCGCCTGCACAGAAAGGAAGAGTACAAGCAGAGCATCAAGCCG
AAAGCTTGTGTCTTAATCTATCCGAGCGTGGATATGAAAAATGCGCGACA
TCCGTCCTTCTCGACCCATGCGAACGTTAGCCACTTAACGCCGGAAATGA
TTAATATGTTCTTCAATGCCTACCTGCCTGATAAAAATGGGAATGGTACT
AGTAGTAGTAGTAGTAGTAGTAGTAGAAGTGATCATTATAGCGGTAGTAG
TAGTAGCAGCAGCAGCAGCTGTAATGGCAATGGCTGCAGCAATAATACGG
AAGGCCTCTTCCAAGAAGAGCTCCGACTAGATCCTGATGTATCAGTGCTC
TATTCCACCCATTTACACCTCTTTCCCCCTACCCTCGTCCTCAGCGCGGC
CTGTGACCCTTTGATAGACGAAGGCATCTTGTTCGTCAAGCGATTGAGAG
AGGAGAAAGTGGATGTCCGGCATGTGATATATCCCGAGATAATTCACGGC
TTCTTTTCAGGCTATGATATGTTCCCGGAGGCGGAAATGGCATTGGGAGA
GACTGCAAATTTCTTGAAGGAGGGCTTGAGATTGTGA

Coding sequence (CDS) from alignment at scaffold_8:997933..999069+

>mRNA_4162 ID=mRNA_4162|Name=jgi.p|Nanoce1779_2|638690|organism=Nannochloropsis oceanica|type=CDS|length=1137bp|location=Sequence derived from alignment at scaffold_8:997933..999069+ (Nannochloropsis oceanica)
ATGGCGTCCCATACATCAAATACGATCAAACTCACTGAGGGTAGCAAGCG
GTACACTGCGCTGTGGCCCAAGCCGCCTGTGGGCGACGTAGACCTTGCTG
CCACACGCGCGACAGTGGAGTACATGTCCCGTCTCGTCGGCGGCCGTGTC
TTGCCCATGCGTCGTGTGGAAGACATTCCGCTCACCTCTCTCGATGGATC
TAGCCCTTTTTTTGTCCGCAACTACTTCCCCACTCTTCTTGAAGAAGATA
AGGTGGGCGAGCAGAAGTTGGGCGTCATTCTGTATTCCCACGGGGGCGGA
GGAATGGTGGGCAGCGTGGCCTCCTACGACTCCATGTGCCGACGGATCGC
CGCCACCTGTCACATGGCCGTCGTCTCGGTGGACTACCGCCTGACACCCG
AGCACCCTTACCCCGCCGCCTTAGAAGACATGGAAGCTGCCTTTCAATTG
GTCGTCAATGATTTGGTCATGAGGCAGTACCCCGAGGTACTGGACCCGGG
GAAGGTGGTGCTGATGGGGGACTCCTTCGGAGGGCACCTGGCCGCCTCGC
TGCTGCTCCGCCTGCACAGAAAGGAAGAGTACAAGCAGAGCATCAAGCCG
AAAGCTTGTGTCTTAATCTATCCGAGCGTGGATATGAAAAATGCGCGACA
TCCGTCCTTCTCGACCCATGCGAACGTTAGCCACTTAACGCCGGAAATGA
TTAATATGTTCTTCAATGCCTACCTGCCTGATAAAAATGGGAATGGTACT
AGTAGTAGTAGTAGTAGTAGTAGTAGAAGTGATCATTATAGCGGTAGTAG
TAGTAGCAGCAGCAGCAGCTGTAATGGCAATGGCTGCAGCAATAATACGG
AAGGCCTCTTCCAAGAAGAGCTCCGACTAGATCCTGATGTATCAGTGCTC
TATTCCACCCATTTACACCTCTTTCCCCCTACCCTCGTCCTCAGCGCGGC
CTGTGACCCTTTGATAGACGAAGGCATCTTGTTCGTCAAGCGATTGAGAG
AGGAGAAAGTGGATGTCCGGCATGTGATATATCCCGAGATAATTCACGGC
TTCTTTTCAGGCTATGATATGTTCCCGGAGGCGGAAATGGCATTGGGAGA
GACTGCAAATTTCTTGAAGGAGGGCTTGAGATTGTGA

Synonyms

Publications