jgi.p|Nanoce1779_2|586775, mRNA_4161 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586775
Unique NamemRNA_4161
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length337
Alignment locationscaffold_8:996568..997260 +

Link to JBrowse

Properties
Property NameValue
TranscriptId586861
TrackFilteredModels2
ProteinId586775
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:996568..997260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586775gene_4161Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586775mRNA_4161-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4161CDS_4161Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4161 ID=mRNA_4161|Name=jgi.p|Nanoce1779_2|586775|organism=Nannochloropsis oceanica|type=mRNA|length=337bp
TCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCTTCGTTGAGACAGATGCC
CACCTCACCGGCCCCGCTCTGGTCCTCGGCATTCTCGTCCCACTCTAACT
CCTCGCTGTCGCTGCTGTCATTGTCTTTGGCCTCTTTCGTCCTCTTGGCG
GGCGGTTTAAATCGCTGCTCTGCTTTCTCGTCTTCCTCTGTTAGAGCAGC
AGCAATCGCGGCATCATTGTCCTCCTTGTATGACACGGGAGCCCTATTCC
GCCGGGGCCGCTCCGCCGACAACATGATCGTGATGTTGATTGTGTTAGTA
CTGCTGCGTCTGCTGCTACTGATGCTGCTGCTGCTGT
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protein sequence of jgi.p|Nanoce1779_2|586775

>mRNA_4161-protein ID=mRNA_4161-protein|Name=jgi.p|Nanoce1779_2|586775|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MPTSPAPLWSSAFSSHSNSSLSLLSLSLASFVLLAGGLNRCSAFSSSSVR
AAAIAASLSSLYDTGALFRRGRSADNMIVMLIVLVLLRLLLLMLLLL
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mRNA from alignment at scaffold_8:996568..997260+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4161 ID=mRNA_4161|Name=jgi.p|Nanoce1779_2|586775|organism=Nannochloropsis oceanica|type=mRNA|length=693bp|location=Sequence derived from alignment at scaffold_8:996568..997260+ (Nannochloropsis oceanica)
TCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCTTCGTTGAGACAGATGCC
CACCTCACCGGCCCCGCTCTGGTCCTCGGCATTCTCGTCCCACTCTAACT
CCTCGCTGTCGCTGCTGTCATTGTCTTTGGCCTCTTTCGTCCTCTTGGCG
GGCGGTTTAAATCGCTGCTATTGGGTGATAGAAGTAGGTAGAAAAGGAGG
GCGGGAGATGGCCATAGAAAGGTTGGATGAGACACGAATAGGCTGATACA
AGGACAGAAGAGGGGAGAAGAAAGGTGGTATATGTGGAAGTCACTATTCA
GGTGTTCAGCACGATCAGGGATAGAGGAAGGGACTGGGGGGAATGGTCAT
GGATTGAGGTGAGGAGCGTACAGCTCGCCCGCAGGAATTAAGCTACCCTC
AACAGCAAGGAAAGGCTGCGCTCACGTCCCACGACACAGTATGTGCAACC
ATTTCATCCCCCTCCCGCCCCGCTACTGCCTCCATCTCCTCAAGTAGAGC
TCCATCGAGACTTCAGGACGCACCTCTGCTTTCTCGTCTTCCTCTGTTAG
AGCAGCAGCAATCGCGGCATCATTGTCCTCCTTGTATGACACGGGAGCCC
TATTCCGCCGGGGCCGCTCCGCCGACAACATGATCGTGATGTTGATTGTG
TTAGTACTGCTGCGTCTGCTGCTACTGATGCTGCTGCTGCTGT
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Coding sequence (CDS) from alignment at scaffold_8:996568..997260+

>mRNA_4161 ID=mRNA_4161|Name=jgi.p|Nanoce1779_2|586775|organism=Nannochloropsis oceanica|type=CDS|length=584bp|location=Sequence derived from alignment at scaffold_8:996568..997260+ (Nannochloropsis oceanica)
ATGCCCACCTCACCGGCCCCGCTCTGGTCCTCGGCATTCTCGTCCCACTC
TAACTCCTCGCTGTCGCTGCTGTCATTGTCTTTGGCCTCTTTCGTCCTCT
TGGCGGGCGGTTTAAATCGCTGCTCTGCTTTCTCGTCTTCCTCTGTTAGA
GCAGCAGCAATCGCGGCATCATTGTCCTCCTTGTATGACACGGGAGCCCT
ATTCCGCCGGGGCCGCTCCGCCGACAACATGATCGTGATGTTGATTGTGT
TAGTACTGCTGCGTCTGCTGCTACTGATGCTGCTGCTGCTGTATGCCCAC
CTCACCGGCCCCGCTCTGGTCCTCGGCATTCTCGTCCCACTCTAACTCCT
CGCTGTCGCTGCTGTCATTGTCTTTGGCCTCTTTCGTCCTCTTGGCGGGC
GGTTTAAATCGCTGCTCTGCTTTCTCGTCTTCCTCTGTTAGAGCAGCAGC
AATCGCGGCATCATTGTCCTCCTTGTATGACACGGGAGCCCTATTCCGCC
GGGGCCGCTCCGCCGACAACATGATCGTGATGTTGATTGTGTTAGTACTG
CTGCGTCTGCTGCTACTGATGCTGCTGCTGCTGT
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Synonyms
Publications