jgi.p|Nanoce1779_2|577260, mRNA_416 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577260
Unique NamemRNA_416
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1038
Alignment locationscaffold_3:1030547..1031584 +

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Properties
Property NameValue
TranscriptId577346
TrackFilteredModels2
ProteinId577260
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1030547..1031584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577260gene_416Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577260mRNA_416-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_416CDS_416Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_416 ID=mRNA_416|Name=jgi.p|Nanoce1779_2|577260|organism=Nannochloropsis oceanica|type=mRNA|length=1038bp
CAGGGGTCAGCAGCAACCCACTTACGGCCTAGCTCCTCGCCTCTTCGTTC
CATGGCGGCACGTTCACCATCCTCCCGAAGCCTCCTCGCGGCCCTGCTCC
TCTTCCTGCCTTTCGTGGCCCACGGCTTTGTATTCCCCCAAACAAGGATG
AGCAATATTCTGCCTTCGTCCCGCGTGCAGTCCACCTTGATAGCGTCCTT
ATCGACCTCGTCCTCGTCCTCTTCTTTTGCCTCGTCCACCTCCCGTGCTT
CGCCCTCCTCCCCCTTCCTCCGTCGGCGTTGGCGTCCGCTCTTTCAACAA
CAACCCCCGGCGGGAGAAGAATTATCTGGCCCCACTCTGTCCAAGGACAT
GTCGCCCATCCCTCCTCCTTCTTCCTCCCCTCTCTCGCCCAATTACAAAA
CCATTGCCGCCCTTTTAGGCGGAGAGCTCCTCCTCGGCCTCTTGGCATTC
CCTGTGGGTCATTTTTTCAAAATTAATCCACTGGCGACCGCAAAGGCACC
GATGGGGTTCGGACCGTTGTTGGCAGTCAGTGCGCTGCTGACACTCCCTG
CCTTGCTTCTCCATTTTGCCTCCGGCCGAGAAATCGAGGACATGTTGCGG
GAATCGCTGGAAGGTATTTTTGGTTCAGAGACGGCAAAGAAACAGCCGTT
GGTCGTGATAGCTATTTCGGTGTTGCTTTCCTTGTCAGCAGGCATGGGGG
AAGAGGTCGCATTCCGTGGGGCCTTGCAACCGATTTTGAGTCAAGTGACA
AATAATCCGTGGATGGGCCTGGGGATCTCCTCGTTCATTTTTGCAGCGCT
TCATGCGGCGACTCCGCGGTACTTTCTGCTAGCATTAGTACTGTCGGTAT
ATTTGGGTTCTCTGCAGATAAGGTACGCGAACTTGTGGGTGCCGGTGATG
GTGCACACGCTGTTTGACGTCGTGGGGTTTGTCCAGAACCACTTTTGGGG
TGGAGGGAAGCGGGGGAAGGAGGCGAATACGGCTTAAGGAACGAAGAAAT
ATGGGAGAGGATTGCGATATGCGAATTCGGTAGGGGGG
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protein sequence of jgi.p|Nanoce1779_2|577260

>mRNA_416-protein ID=mRNA_416-protein|Name=jgi.p|Nanoce1779_2|577260|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MAARSPSSRSLLAALLLFLPFVAHGFVFPQTRMSNILPSSRVQSTLIASL
STSSSSSSFASSTSRASPSSPFLRRRWRPLFQQQPPAGEELSGPTLSKDM
SPIPPPSSSPLSPNYKTIAALLGGELLLGLLAFPVGHFFKINPLATAKAP
MGFGPLLAVSALLTLPALLLHFASGREIEDMLRESLEGIFGSETAKKQPL
VVIAISVLLSLSAGMGEEVAFRGALQPILSQVTNNPWMGLGISSFIFAAL
HAATPRYFLLALVLSVYLGSLQIRYANLWVPVMVHTLFDVVGFVQNHFWG
GGKRGKEANTA*
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mRNA from alignment at scaffold_3:1030547..1031584+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_416 ID=mRNA_416|Name=jgi.p|Nanoce1779_2|577260|organism=Nannochloropsis oceanica|type=mRNA|length=1038bp|location=Sequence derived from alignment at scaffold_3:1030547..1031584+ (Nannochloropsis oceanica)
CAGGGGTCAGCAGCAACCCACTTACGGCCTAGCTCCTCGCCTCTTCGTTC
CATGGCGGCACGTTCACCATCCTCCCGAAGCCTCCTCGCGGCCCTGCTCC
TCTTCCTGCCTTTCGTGGCCCACGGCTTTGTATTCCCCCAAACAAGGATG
AGCAATATTCTGCCTTCGTCCCGCGTGCAGTCCACCTTGATAGCGTCCTT
ATCGACCTCGTCCTCGTCCTCTTCTTTTGCCTCGTCCACCTCCCGTGCTT
CGCCCTCCTCCCCCTTCCTCCGTCGGCGTTGGCGTCCGCTCTTTCAACAA
CAACCCCCGGCGGGAGAAGAATTATCTGGCCCCACTCTGTCCAAGGACAT
GTCGCCCATCCCTCCTCCTTCTTCCTCCCCTCTCTCGCCCAATTACAAAA
CCATTGCCGCCCTTTTAGGCGGAGAGCTCCTCCTCGGCCTCTTGGCATTC
CCTGTGGGTCATTTTTTCAAAATTAATCCACTGGCGACCGCAAAGGCACC
GATGGGGTTCGGACCGTTGTTGGCAGTCAGTGCGCTGCTGACACTCCCTG
CCTTGCTTCTCCATTTTGCCTCCGGCCGAGAAATCGAGGACATGTTGCGG
GAATCGCTGGAAGGTATTTTTGGTTCAGAGACGGCAAAGAAACAGCCGTT
GGTCGTGATAGCTATTTCGGTGTTGCTTTCCTTGTCAGCAGGCATGGGGG
AAGAGGTCGCATTCCGTGGGGCCTTGCAACCGATTTTGAGTCAAGTGACA
AATAATCCGTGGATGGGCCTGGGGATCTCCTCGTTCATTTTTGCAGCGCT
TCATGCGGCGACTCCGCGGTACTTTCTGCTAGCATTAGTACTGTCGGTAT
ATTTGGGTTCTCTGCAGATAAGGTACGCGAACTTGTGGGTGCCGGTGATG
GTGCACACGCTGTTTGACGTCGTGGGGTTTGTCCAGAACCACTTTTGGGG
TGGAGGGAAGCGGGGGAAGGAGGCGAATACGGCTTAAGGAACGAAGAAAT
ATGGGAGAGGATTGCGATATGCGAATTCGGTAGGGGGG
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Coding sequence (CDS) from alignment at scaffold_3:1030547..1031584+

>mRNA_416 ID=mRNA_416|Name=jgi.p|Nanoce1779_2|577260|organism=Nannochloropsis oceanica|type=CDS|length=936bp|location=Sequence derived from alignment at scaffold_3:1030547..1031584+ (Nannochloropsis oceanica)
ATGGCGGCACGTTCACCATCCTCCCGAAGCCTCCTCGCGGCCCTGCTCCT
CTTCCTGCCTTTCGTGGCCCACGGCTTTGTATTCCCCCAAACAAGGATGA
GCAATATTCTGCCTTCGTCCCGCGTGCAGTCCACCTTGATAGCGTCCTTA
TCGACCTCGTCCTCGTCCTCTTCTTTTGCCTCGTCCACCTCCCGTGCTTC
GCCCTCCTCCCCCTTCCTCCGTCGGCGTTGGCGTCCGCTCTTTCAACAAC
AACCCCCGGCGGGAGAAGAATTATCTGGCCCCACTCTGTCCAAGGACATG
TCGCCCATCCCTCCTCCTTCTTCCTCCCCTCTCTCGCCCAATTACAAAAC
CATTGCCGCCCTTTTAGGCGGAGAGCTCCTCCTCGGCCTCTTGGCATTCC
CTGTGGGTCATTTTTTCAAAATTAATCCACTGGCGACCGCAAAGGCACCG
ATGGGGTTCGGACCGTTGTTGGCAGTCAGTGCGCTGCTGACACTCCCTGC
CTTGCTTCTCCATTTTGCCTCCGGCCGAGAAATCGAGGACATGTTGCGGG
AATCGCTGGAAGGTATTTTTGGTTCAGAGACGGCAAAGAAACAGCCGTTG
GTCGTGATAGCTATTTCGGTGTTGCTTTCCTTGTCAGCAGGCATGGGGGA
AGAGGTCGCATTCCGTGGGGCCTTGCAACCGATTTTGAGTCAAGTGACAA
ATAATCCGTGGATGGGCCTGGGGATCTCCTCGTTCATTTTTGCAGCGCTT
CATGCGGCGACTCCGCGGTACTTTCTGCTAGCATTAGTACTGTCGGTATA
TTTGGGTTCTCTGCAGATAAGGTACGCGAACTTGTGGGTGCCGGTGATGG
TGCACACGCTGTTTGACGTCGTGGGGTTTGTCCAGAACCACTTTTGGGGT
GGAGGGAAGCGGGGGAAGGAGGCGAATACGGCTTAA
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Synonyms
Publications