jgi.p|Nanoce1779_2|586766, mRNA_4159 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586766
Unique NamemRNA_4159
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1037
Alignment locationscaffold_8:985782..986818 +

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Properties
Property NameValue
TranscriptId586852
TrackFilteredModels2
ProteinId586766
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:985782..986818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586766gene_4159Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586766mRNA_4159-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4159CDS_4159Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4159 ID=mRNA_4159|Name=jgi.p|Nanoce1779_2|586766|organism=Nannochloropsis oceanica|type=mRNA|length=1037bp
CAGACAAGCAAGCCACCAGTCAGCAAGAGCCATGGCGCACCGTTATTCTC
TCTTTCTTCTCCCCCTCTTCCTCCCCTTCCTCACGTCGGCCTTTCACGCA
CCGATGCGAACGTCCTCACCCTGGGTTGTACTAGGCCACCGCCGCAGTAG
CAGCCTCAGCGGTCTCAGCAGCGGCAACGGAAGAAGACCGCCCCTTCCTC
CTTCCTACCTTGCCTTCCATCAGCTTTTTTCCTCCAGCAACAGCGGTGAG
GGCGAGGATGAGGAGCGGGAGGAGAATGAGGAGGATGGCAGCTTGGTTGA
CAAGGTCAAGGCCTTCTTTGCCGACGCGGAGAACCGCAAAGACACCACGC
TGTTTGCAGTCTCCTTCCTCGTCTCCCTGGGCATCCGAGCCTTCATCGTT
GAGCCCCGCTACATCCCTTCCCTGAGCATGTACCCAACCTTCCTGGTGGG
TGATCAATTGGCCGTGGAAAAGGTGACGAAAACCTACAAGAATTACGAGC
GCGGGGACGTTGTCGTCTTCAACCCGACCCGTGGGTATCAAGAGTACGTG
AGCCAAGACCCTTATATTACAGACAAGAGCAAGATCAACGAGGCATTAAT
CAAGCGGATCATTGCGAAGGAAGGGGATGTGGTGGAGGTAAAAGATGGCT
TGCTCTATATCAATGGCGCGGCGCAAGACGAGAAGTACATTGCGGAGGGT
CCGGCCTATGTGTGGGGGCCTAGTCGAGTGCCGGATGGCATGTATATGGT
GTTGGGAGATAACCGGAATCATTCTCTTGATTCGCATATCTGGGGATTCT
TGCCCAAGGAGAATATAATTGGCAAGGCAATTTGCAAGTACTGGCCGCCG
TGGCGGTTGGGCTTGGTTGAGGGGCCGTTCCAGCAGGCGTCGTAGGGGGG
TTAGGAAGGGAGGAAAAGATGGAAGAATAATTGGAAGGTGTGAGTGAGAG
TGACACACATCTAGGTGAATGCGGGCATATGCCTTCTGTTGATTGCGTAG
ATCGAAAGTAAAAGCAAAGAATTTACTTATTTGATGA
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protein sequence of jgi.p|Nanoce1779_2|586766

>mRNA_4159-protein ID=mRNA_4159-protein|Name=jgi.p|Nanoce1779_2|586766|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MAHRYSLFLLPLFLPFLTSAFHAPMRTSSPWVVLGHRRSSSLSGLSSGNG
RRPPLPPSYLAFHQLFSSSNSGEGEDEEREENEEDGSLVDKVKAFFADAE
NRKDTTLFAVSFLVSLGIRAFIVEPRYIPSLSMYPTFLVGDQLAVEKVTK
TYKNYERGDVVVFNPTRGYQEYVSQDPYITDKSKINEALIKRIIAKEGDV
VEVKDGLLYINGAAQDEKYIAEGPAYVWGPSRVPDGMYMVLGDNRNHSLD
SHIWGFLPKENIIGKAICKYWPPWRLGLVEGPFQQAS*
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mRNA from alignment at scaffold_8:985782..986818+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4159 ID=mRNA_4159|Name=jgi.p|Nanoce1779_2|586766|organism=Nannochloropsis oceanica|type=mRNA|length=1037bp|location=Sequence derived from alignment at scaffold_8:985782..986818+ (Nannochloropsis oceanica)
CAGACAAGCAAGCCACCAGTCAGCAAGAGCCATGGCGCACCGTTATTCTC
TCTTTCTTCTCCCCCTCTTCCTCCCCTTCCTCACGTCGGCCTTTCACGCA
CCGATGCGAACGTCCTCACCCTGGGTTGTACTAGGCCACCGCCGCAGTAG
CAGCCTCAGCGGTCTCAGCAGCGGCAACGGAAGAAGACCGCCCCTTCCTC
CTTCCTACCTTGCCTTCCATCAGCTTTTTTCCTCCAGCAACAGCGGTGAG
GGCGAGGATGAGGAGCGGGAGGAGAATGAGGAGGATGGCAGCTTGGTTGA
CAAGGTCAAGGCCTTCTTTGCCGACGCGGAGAACCGCAAAGACACCACGC
TGTTTGCAGTCTCCTTCCTCGTCTCCCTGGGCATCCGAGCCTTCATCGTT
GAGCCCCGCTACATCCCTTCCCTGAGCATGTACCCAACCTTCCTGGTGGG
TGATCAATTGGCCGTGGAAAAGGTGACGAAAACCTACAAGAATTACGAGC
GCGGGGACGTTGTCGTCTTCAACCCGACCCGTGGGTATCAAGAGTACGTG
AGCCAAGACCCTTATATTACAGACAAGAGCAAGATCAACGAGGCATTAAT
CAAGCGGATCATTGCGAAGGAAGGGGATGTGGTGGAGGTAAAAGATGGCT
TGCTCTATATCAATGGCGCGGCGCAAGACGAGAAGTACATTGCGGAGGGT
CCGGCCTATGTGTGGGGGCCTAGTCGAGTGCCGGATGGCATGTATATGGT
GTTGGGAGATAACCGGAATCATTCTCTTGATTCGCATATCTGGGGATTCT
TGCCCAAGGAGAATATAATTGGCAAGGCAATTTGCAAGTACTGGCCGCCG
TGGCGGTTGGGCTTGGTTGAGGGGCCGTTCCAGCAGGCGTCGTAGGGGGG
TTAGGAAGGGAGGAAAAGATGGAAGAATAATTGGAAGGTGTGAGTGAGAG
TGACACACATCTAGGTGAATGCGGGCATATGCCTTCTGTTGATTGCGTAG
ATCGAAAGTAAAAGCAAAGAATTTACTTATTTGATGA
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Coding sequence (CDS) from alignment at scaffold_8:985782..986818+

>mRNA_4159 ID=mRNA_4159|Name=jgi.p|Nanoce1779_2|586766|organism=Nannochloropsis oceanica|type=CDS|length=864bp|location=Sequence derived from alignment at scaffold_8:985782..986818+ (Nannochloropsis oceanica)
ATGGCGCACCGTTATTCTCTCTTTCTTCTCCCCCTCTTCCTCCCCTTCCT
CACGTCGGCCTTTCACGCACCGATGCGAACGTCCTCACCCTGGGTTGTAC
TAGGCCACCGCCGCAGTAGCAGCCTCAGCGGTCTCAGCAGCGGCAACGGA
AGAAGACCGCCCCTTCCTCCTTCCTACCTTGCCTTCCATCAGCTTTTTTC
CTCCAGCAACAGCGGTGAGGGCGAGGATGAGGAGCGGGAGGAGAATGAGG
AGGATGGCAGCTTGGTTGACAAGGTCAAGGCCTTCTTTGCCGACGCGGAG
AACCGCAAAGACACCACGCTGTTTGCAGTCTCCTTCCTCGTCTCCCTGGG
CATCCGAGCCTTCATCGTTGAGCCCCGCTACATCCCTTCCCTGAGCATGT
ACCCAACCTTCCTGGTGGGTGATCAATTGGCCGTGGAAAAGGTGACGAAA
ACCTACAAGAATTACGAGCGCGGGGACGTTGTCGTCTTCAACCCGACCCG
TGGGTATCAAGAGTACGTGAGCCAAGACCCTTATATTACAGACAAGAGCA
AGATCAACGAGGCATTAATCAAGCGGATCATTGCGAAGGAAGGGGATGTG
GTGGAGGTAAAAGATGGCTTGCTCTATATCAATGGCGCGGCGCAAGACGA
GAAGTACATTGCGGAGGGTCCGGCCTATGTGTGGGGGCCTAGTCGAGTGC
CGGATGGCATGTATATGGTGTTGGGAGATAACCGGAATCATTCTCTTGAT
TCGCATATCTGGGGATTCTTGCCCAAGGAGAATATAATTGGCAAGGCAAT
TTGCAAGTACTGGCCGCCGTGGCGGTTGGGCTTGGTTGAGGGGCCGTTCC
AGCAGGCGTCGTAG
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Synonyms
Publications