jgi.p|Nanoce1779_2|425792, mRNA_4158 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|425792
Unique Name	mRNA_4158
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2199
Alignment location	scaffold_8:983368..985870 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	425878
Track	FilteredModels2
ProteinId	425792

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:983368..985870 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|425792	gene_4158	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|425792	mRNA_4158-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4158	CDS_4158	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:983368..985870+
coding sequence from alignment at scaffold_8:983368..985870+

mRNA sequence

>mRNA_4158 ID=mRNA_4158|Name=jgi.p|Nanoce1779_2|425792|organism=Nannochloropsis oceanica|type=mRNA|length=2199bp
GCTACCAAGAATTTTGGGAGTAATTGAGTATCAAAGTGCTCCGTCGTCGG
CGGATGTGGGCGTGTAAATCATCGTGCAATCTGTGTATCCATTAGCTTTT
TGGCTATGAGAAAGAAGCGCGATCACAGGCATGCAGTTTCAAAATAACCT
CCTCACCACAACAGCCATACGCCACATCCTTGCGCGTCGTCGTCCTTGCT
CCTTTCCGATTCGGAGGCTCACGCGGTTCTCTCTGTAATAGTTCTTTTCT
ATGACACCCCTCCATTATCAACTTTATCCAATAACACCTTCACACACTTA
AAACCCAGGTGGTAAGGGCCGTTCGTGAGCCAAGCAAAACAAGCGCGCTG
TGTCCTTGGCATCCAACTCCTCGCCGTCATACGCCCGCCTGCTCGAGGCC
TCCGTCGATTGATTCAGCCTCCCCACATCCCGATATACAAAACGCGGCAA
TGATCGCCGTGTCTTTCCTTCCTCCATTCGTTCTCCTCCTGCTCCTCCTT
GGCTCATCACATCATCCCCATTCCCCTTCATGGCCTCCTCCCAAGCCACC
TCCTGCAAGACCGCCTGTTGTCGCCTCGACCTCTCTTCAGCCTGCCTCAT
AGGTCGCATGGCCCATGCTCGTTCTCTTCTCTCCTTTGCATGTCTTAGAC
TCAAGCGCGCCCTTCGCTCCAACACTAATTTTAAGACGTTCGGACTCTCT
TTCTCGTCCTCCCTCCCTCCCTTCCCTTCGTGGACTAGCCGCCTGTATTC
CGCCTCCTCTTCCATTTCCTCCTCCAGCCGAGCCTGTTCTTCTGTTCGCT
GTCGCTCTCTCTCCTCTTTCTCTTCCCGGTGCCTTGCCAATTGCTTCCTC
GTCAAGGCTGCTCTTCGTTTTTCCTGTGCAGCCTTGCGTTGCTGCGCTTC
CCACATCTGAAGTTTTTGTGCCTCCTCCTCTTCCTCCTCCTGTAGCTGCC
GTCGTCTTCGCCATTCCGCTACGAGGCGACGTTTGCGCGTCACTTCGTCC
AAATTCCACCCCTTCTCCTCTTCTTCCCTCCTTGCCTCCTCCTCGGCCTC
CTTCCTCTGCCTGACACGCAGTGCTCGAGCGCGGATGCGATGGCGATGTT
TGACGTACCATTCTACATGCCGCATCACCTCCCCCTCACTTCGTGACCAC
AGAACACGTACCGCCCGATCCAAGAATAACAAATTGCCCTTGACTTCTGC
CACCGGGTCTTCATCGTCTTCCTCTTCCTCCTCCTCATCCTCTTCCTCCT
CTTCCTCCCTCGGTCGGGCATGTCCTCGAAAATCCCGCCACAAAGCCAGA
AATTTTTCATGTTCCTCCGCCTGCCACCCACCCGTCAAACCACCATGTGC
AAGAATCTCTTCATCCAATGCCGCGATGGCTGATTGAATTTCCATCACGC
GCACTCTAGCCTGTGATTGTTGTGCTTTCATCTTACTGCTCGTGATTATG
GCACTCTTGCTCTTACCGGTAGTGCTGAGAGTCTTTTTTTTATAATTCTT
TTCACGATTATCCTTTTCTCCAGGAGCAGCAGCAGCTGTGGTCATTGCCT
TCTCCATATCCTTGGTCAGCACCCTCTCTTGCCAGCGCAATGCCTCAAAT
TCCCGGCGATGGGCCAAGGCCAAAGCATGCAGCCCATCTTGCACAGATGC
TAGGTACACCTCAATTTTGTCACTGGCCACGGGAACTGTTGCTGCTGCTT
CTCCTCTTTCTTCTTCTACTCTTCGTCCTCCTTTTTCGAAGTTAAGATGG
TGGTGGTGCTGCTCCTTCTTGTCGCCACTTATGCACCGTATGCGTGCGCG
GGCCTTGGCCAGCGCACTCTGCAGCCCGCCCAACTTCCGTCGAAATGCTA
CTTGGGCTTGCACATGTTCGTAAGACGATTCGGTTGCAAGTGTGGTTGTA
AGGCTGGGCGGCACGAGCCGCTGGAGGTCGTGCTCGAGGCGCGCAAGGTG
TTGGGTGAGGGCTGAGTGCCGGGCGAAGTAAGCTTGCTTCTCGAGGTCTG
CTTGTTGCGGAGGTGACGACGTCGGCCCCATGGCTGGGCTGCTGCTGGTG
CTGCTGCGTTCCAAACTATGGCCTGCGATTGCGTTGTGGACCGGACTTGT
TGCGGCTTGACAGACAAGCAAGCCACCAGTCAGCAAGAGCCATGGCGCAC
CGTTATTCTCTCTTTCTTCTCCCCCTCTTCCTCCCCTTCCTCACGTCGG

protein sequence of jgi.p|Nanoce1779_2|425792

>mRNA_4158-protein ID=mRNA_4158-protein|Name=jgi.p|Nanoce1779_2|425792|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MLVLFSPLHVLDSSAPFAPTLILRRSDSLSRPPSLPSLRGLAACIPPPLP
FPPPAEPVLLFAVALSPLSLPGALPIASSSRLLFVFPVQPCVAALPTSEV
FVPPPLPPPVAAVVFAIPLRGDVCASLRPNSTPSPLLPSLPPPRPPSSA*

mRNA from alignment at scaffold_8:983368..985870+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4158 ID=mRNA_4158|Name=jgi.p|Nanoce1779_2|425792|organism=Nannochloropsis oceanica|type=mRNA|length=2503bp|location=Sequence derived from alignment at scaffold_8:983368..985870+ (Nannochloropsis oceanica)
GCTACCAAGAATTTTGGGAGTAATTGAGTATCAAAGTGCTCCGTCGTCGG
CGGATGTGGGCGTGTAAATCATCGTGCAATCTGTGTATCCATTAGCTTTT
TGGCTATGAGAAAGAAGCGCGATCACAGGCATGCAGTTTCAAAATAACCT
CCTCACCACAACAGCCATACGCCACATCCTTGCGCGTCGTCGTCCTTGCT
CCTTTCCGATTCGGAGGCTCACGCGGTTCTCTCTGTAATAGTTCTTTTCT
ATGACACCCCTCCATTATCAACTTTATCCAATAACACCTTCACACACTTA
AAACCCAGGTGGTAAGGGCCGTTCGTGAGCCAAGCAAAACAAGCGCGCTG
TGTCCTTGGCATCCAACTCCTCGCCGTCATACGCCCGCCTGCTCGAGGCC
TCCGTCGATTGATTCAGCCTCCCCACATCCCGATATACAAAACGCGGCAA
TGATCGCCGTGTCTTTCCTTCCTCCATTCGTTCTCCTCCTGCTCCTCCTT
GGCTCATCACATCATCCCCATTCCCCTTCATGGCCTCCTCCCAAGCCACC
TCCTGCAAGACCGCCTGTTGTCGCCTCGACCTCTCTTCAGCCTGCCTCAT
AGGTCGCATGGCCCATGCTCGTTCTCTTCTCTCCTTTGCATGTCTTAGAC
TCAAGCGCGCCCTTCGCTCCAACACTAATTTTAAGACGTTCGGACTCTCT
TTCTCGTCCTCCCTCCCTCCCTTCCCTTCGTGGACTAGCCGCCTGTATTC
CGCCTCCTCTTCCATTTCCTCCTCCAGCCGAGCCTGTTCTTCTGTTCGCT
GTCGCTCTCTCTCCTCTTTCTCTTCCCGGTGCCTTGCCAATTGCTTCCTC
GTCAAGGCTGCTCTTCGTTTTTCCTGTGCAGCCTTGCGTTGCTGCGCTTC
CCACATCTGAAGTTTTTGTGCCTCCTCCTCTTCCTCCTCCTGTAGCTGCC
GTCGTCTTCGCCATTCCGCTACGAGGCGACGTTTGCGCGTCACTTCGTCC
AAATTCCACCCCTTCTCCTCTTCTTCCCTCCTTGCCTCCTCCTCGGCCTC
CTTCCTCTGCCTGACACGCAGTGCTCGAGCGCGGATGCGATGGCGATGTT
TGACGTACCATTCTACATGCCGCATCACCTCCCCCTCACTTCGTGACCAC
AGAACACGTACCGCCCGATCCAAGAATAACAAATTGCCCTTGACTTCTGC
CACCGGGTCTTCATCGTCTTCCTCTTCCTCCTCCTCATCCTCTTCCTCCT
CTTCCTCCCTCGGTCGGGCATGTCCTCGAAAATCCCGCCACAAAGCCAGA
AATTTTTCATGTTCCTCCGCCTGCCACCCACCCGTCAAACCACCATGTGC
AAGAATCTCTTCATCCAATGCCGCGATGGCTGATTGAATTTCCATCACGC
GCACTCTAGCCTGTGATTGTTGTGCTTTCATCTTACTGCTCGTGATTATG
GCACTCTTGCTCTTACCGGTAGTGCTGAGAGTCTTTTTTTTATAATTCTT
TTCACGATTATCCTTTTCTCCAGGAGCAGCAGCAGCTGTGGTCATTGCCT
TCTCCATATCCTTGGTCAGCACCCTCTCTTGCCAGCGCAATGCCTCAAAT
TCCCGGCGATGGGCCAAGGCCAAAGCATGCAGCCCATCTTGCACAGATGC
TAGGTACACCTCAATTTTGTCACTGGCCACGGGAACTGTTGCTGCTGCTT
CTCCTCTTTCTTCTTCTACTCTTCGTCCTCCTTTTTCGAAGTTAAGATGG
TGGTGGTGCTGCTCCTTCTTGTCGCCACTTATGCACCGTATGCGTGCGCG
GGCCTTGGCCAGCGCACTCTGCAGCCCGCCCAACTTCCGTCGAAATGCTA
CTTGGGCTTGCACATGTTCGTAAGACGATTCGGTTGCAAGTGTGGTTGTA
AGGCTGGGCGGCACGAGCCGCTGGAGGTCGTGCTCGAGGCGCGCAAGGTG
TTGGGTGAGGGCTGAGTGCCGGGCGAAGTAAGCTTGCTTCTCGAGGTCTG
CTTGTTGCGGAGGTGACGACGTCGGCCCCATGGCTGGGCTGCTGCTGGTG
CTGCTGCGTTCCAAACTATGGCCTGCGATTGCGTTGTACGTTGGACGATG
TAGTCAGGAATTTGGAGTGCCTACAAGCAACTGACCCCCTTGTAGGAATG
CCGCATCTCATATATCAAAAAACGCGCCAAGGAGATATCAGGATTATTTG
GAGGCCTGATGGCGTTGTATTTCTTACACATGCTCCTGTGTCCTGAACAC
ATCACCACCACTGCACAGCGGCAGCAAGTATTGCAAGAGGAGCCCGATAA
CATCCTATTCCAATTTATCAGCTGAAGGAGCGACCTGAGAAAACTGCCTT
ACTCTTCCTCTCCTCCTCCAACCACCCCGTCACATATAGGTGGACCGGAC
TTGTTGCGGCTTGACAGACAAGCAAGCCACCAGTCAGCAAGAGCCATGGC
GCACCGTTATTCTCTCTTTCTTCTCCCCCTCTTCCTCCCCTTCCTCACGT
CGG

Coding sequence (CDS) from alignment at scaffold_8:983368..985870+

>mRNA_4158 ID=mRNA_4158|Name=jgi.p|Nanoce1779_2|425792|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_8:983368..985870+ (Nannochloropsis oceanica)
ATGCTCGTTCTCTTCTCTCCTTTGCATGTCTTAGACTCAAGCGCGCCCTT
CGCTCCAACACTAATTTTAAGACGTTCGGACTCTCTTTCTCGTCCTCCCT
CCCTCCCTTCCCTTCGTGGACTAGCCGCCTGTATTCCGCCTCCTCTTCCA
TTTCCTCCTCCAGCCGAGCCTGTTCTTCTGTTCGCTGTCGCTCTCTCTCC
TCTTTCTCTTCCCGGTGCCTTGCCAATTGCTTCCTCGTCAAGGCTGCTCT
TCGTTTTTCCTGTGCAGCCTTGCGTTGCTGCGCTTCCCACATCTGAAGTT
TTTGTGCCTCCTCCTCTTCCTCCTCCTGTAGCTGCCGTCGTCTTCGCCAT
TCCGCTACGAGGCGACGTTTGCGCGTCACTTCGTCCAAATTCCACCCCTT
CTCCTCTTCTTCCCTCCTTGCCTCCTCCTCGGCCTCCTTCCTCTGCCTGA

Synonyms

Publications