jgi.p|Nanoce1779_2|586753, mRNA_4156 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586753
Unique Name	mRNA_4156
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1300
Alignment location	scaffold_8:977895..979462 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586839
Track	FilteredModels2
ProteinId	586753

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:977895..979462 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586753	gene_4156	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586753	mRNA_4156-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4156	CDS_4156	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:977895..979462+
coding sequence from alignment at scaffold_8:977895..979462+

mRNA sequence

>mRNA_4156 ID=mRNA_4156|Name=jgi.p|Nanoce1779_2|586753|organism=Nannochloropsis oceanica|type=mRNA|length=1300bp
CAATAGCCACAAGCAGGCAGTTGTATCAACATGGCTAACGCTACACCCAG
CAAATCCGCGCCCCAAGCCTATGTCACTCCTTCTCCTCCTGCTGCTCGTT
CGTCCGCCCTCTTCGCTTCCTCTTCCTCTACCAAAACTACCAAGCCTGAG
GCCGTCGGGGAGCTCTACCGGTTCCGCGTCTGGCACACTGCCCTCCTCCT
CACCCTGGCCTTCCTCCTTGACATTCCCTTTCTTATTGATCGGCTCACAA
CAAAACAGTACACTGTGCATACGAAAGGGGGGGTGTTAATCACTGGAGCA
AGCACTGGAATCGGGAGAGATGCGGCCGTGGCGTTGGCGATCAAGCACAA
GGGCTTTGTGGTCTATGCAGGCGTGCGCAATGGCAAAGACGCCAAGGCTA
TCTCAGGCCTGAACATCCCGAATCTCCTGCCGGTTACTCTGGACGTGACC
AATGAGAGAAGCATCAATTCCGTGAAGAAAATAATCATGAAAGATCTGGC
TTCCAAAGGAGACGTTGGAGGAAAGGAGGGAGGAGGAGGAGCAGCAGCAG
CAGGTCTGCCGCTTGTGGCCGTGGTGAACAATGCAGGCATTGCGGGGAGG
TCTCCGTTGGAGTTTCATGCCATGGCTGCAGTTGAAAAGATATTCCATGT
GAATGTATTTGGGCTGCTGAGGGTGACGCAGGTTTTCCTGCCCGAAATCA
GGAAAAACAAGGGGCGTATAATCAACATCTCCTCGGTCCTGGGTGCACTG
ACCATCGCCGACATGGGCGCCTACAGCGCAAGCAAGCACGCGATGGAATC
TTTGTCTGATGGCCTCCGACGGGAGCTCAGGCCATTGGGTGTTAGCGTCA
GGTATGTCAGTCCTCCCTACTTCTTTCTTCCGTCCCTCCCTCTCTCCTCC
TATCCTTTTCCCGTCCCATCCACATTCCTTCCTCCCTCTCTCCCTCTCCC
AAGCATCGTCCAACCCGGCATTGTCGTCTCGGCCATCCACGACAAAGTCG
CCTCCAGCTCCCCCGCCACCTCCTCCTCCGATTCCTCCCCCTCCGCCACG
ACCTACCCCCACATGTACACTCCCGAGAAACAGGCCGAGGGCAAGGCCTT
CCTTCAGCAGGCGGCGTCCACGCGGGTGACTACTGCGGCGATTCTTGATT
CTCTCTTTAATCCCCGCCCGCGCACTCGATACCCTGTTGCGGCCGTGGGG
CCCGTGCCCGCAGGCCTGCTGACATTCAACGCATATTTCTTGCCTGATCG
CGTCACTGACTGGATGATGCAGTAGAACGAGGGGGGGGGGGGGGGGGGGG

protein sequence of jgi.p|Nanoce1779_2|586753

>mRNA_4156-protein ID=mRNA_4156-protein|Name=jgi.p|Nanoce1779_2|586753|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MANATPSKSAPQAYVTPSPPAARSSALFASSSSTKTTKPEAVGELYRFRV
WHTALLLTLAFLLDIPFLIDRLTTKQYTVHTKGGVLITGASTGIGRDAAV
ALAIKHKGFVVYAGVRNGKDAKAISGLNIPNLLPVTLDVTNERSINSVKK
IIMKDLASKGDVGGKEGGGGAAAAGLPLVAVVNNAGIAGRSPLEFHAMAA
VEKIFHVNVFGLLRVTQVFLPEIRKNKGRIINISSVLGALTIADMGAYSA
SKHAMESLSDGLRRELRPLGVSVRYVSPPYFFLPSLPLSSYPFPVPSTFL
PPSLPLPSIVQPGIVVSAIHDKVASSSPATSSSDSSPSATTYPHMYTPEK
QAEGKAFLQQAASTRVTTAAILDSLFNPRPRTRYPVAAVGPVPAGLLTFN
AYFLPDRVTDWMMQ*

mRNA from alignment at scaffold_8:977895..979462+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4156 ID=mRNA_4156|Name=jgi.p|Nanoce1779_2|586753|organism=Nannochloropsis oceanica|type=mRNA|length=1568bp|location=Sequence derived from alignment at scaffold_8:977895..979462+ (Nannochloropsis oceanica)
CAATAGCCACAAGCAGGCAGTTGTATCAACATGGCTAACGCTACACCCAG
CAAATCCGCGCCCCAAGCCTATGTCACTCCTTCTCCTCCTGCTGCTCGTT
CGTCCGCCCTCTTCGCTTCCTCTTCCTCTACCAAAACTACCAAGCCTGAG
GCCGTCGGGGAGCTCTACCGGTTCCGCGTCTGGCACACTGCCCTCCTCCT
CACCCTGGCCTTCCTCCTTGACATTCCCTTTCTTATTGATCGGCTCACAA
CAAAACAGTACACTGTGCATACGAAAGGGGGGGTGTTAATCACTGGAGCA
AGCACTGGAATCGGGAGAGATGCGGCCGTGGCGTTGGCGATCAAGCACAA
GGGCTTTGTGGTCTATGCAGGCGTGCGCAATGGTATGAAAAGCAAGGGGA
GATAAAGGACAATGGCAATGAAATGTGGAGGAATGCTTTGTTTGATTCAT
TCAATAGAGTCGTCTATTTAAAGAGATTCAACCCACCCTTCCTTCCCTCC
CTCCCTCCCTCCCACGCACTTTCTTGCCAGGCAAAGACGCCAAGGCTATC
TCAGGCCTGAACATCCCGAATCTCCTGCCGGTTACTCTGGACGTGACCAA
TGAGAGAAGCATCAATTCCGTGAAGAAAATAATCATGAAAGATCTGGCTT
CCAAAGGAGACGTTGGAGGAAAGGAGGGAGGAGGAGGAGCAGCAGCAGCA
GGTCTGCCGCTTGTGGCCGTGGTGAACAATGCAGGCATTGCGGGGAGGTC
TCCGTTGGAGTTTCATGCCATGGCTGCAGTTGAAAAGATATTCCATGTGA
ATGTATTTGGGCTGCTGAGGGTGACGCAGGTTTTCCTGCCCGAAATCAGG
TAACGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGCAGAGTGTGTTTGTGA
AGCTTCGCCTCGGTTTACTCACGCTCCACTCTCCCGTCCCGTACCTTTCC
TTCCTTTCCTTTCTCGAAGGAAAAACAAGGGGCGTATAATCAACATCTCC
TCGGTCCTGGGTGCACTGACCATCGCCGACATGGGCGCCTACAGCGCAAG
CAAGCACGCGATGGAATCTTTGTCTGATGGCCTCCGACGGGAGCTCAGGC
CATTGGGTGTTAGCGTCAGGTATGTCAGTCCTCCCTACTTCTTTCTTCCG
TCCCTCCCTCTCTCCTCCTATCCTTTTCCCGTCCCATCCACATTCCTTCC
TCCCTCTCTCCCTCTCCCAAGCATCGTCCAACCCGGCATTGTCGTCTCGG
CCATCCACGACAAAGTCGCCTCCAGCTCCCCCGCCACCTCCTCCTCCGAT
TCCTCCCCCTCCGCCACGACCTACCCCCACATGTACACTCCCGAGAAACA
GGCCGAGGGCAAGGCCTTCCTTCAGCAGGCGGCGTCCACGCGGGTGACTA
CTGCGGCGATTCTTGATTCTCTCTTTAATCCCCGCCCGCGCACTCGATAC
CCTGTTGCGGCCGTGGGGCCCGTGCCCGCAGGCCTGCTGACATTCAACGC
ATATTTCTTGCCTGATCGCGTCACTGACTGGATGATGCAGTAGAACGAGG
GGGGGGGGGGGGGGGGGG

Coding sequence (CDS) from alignment at scaffold_8:977895..979462+

>mRNA_4156 ID=mRNA_4156|Name=jgi.p|Nanoce1779_2|586753|organism=Nannochloropsis oceanica|type=CDS|length=3735bp|location=Sequence derived from alignment at scaffold_8:977895..979462+ (Nannochloropsis oceanica)
ATGGCTAACGCTACACCCAGCAAATCCGCGCCCCAAGCCTATGTCACTCC
TTCTCCTCCTGCTGCTCGTTCGTCCGCCCTCTTCGCTTCCTCTTCCTCTA
CCAAAACTACCAAGCCTGAGGCCGTCGGGGAGCTCTACCGGTTCCGCGTC
TGGCACACTGCCCTCCTCCTCACCCTGGCCTTCCTCCTTGACATTCCCTT
TCTTATTGATCGGCTCACAACAAAACAGTACACTGTGCATACGAAAGGGG
GGGTGTTAATCACTGGAGCAAGCACTGGAATCGGGAGAGATGCGGCCGTG
GCGTTGGCGATCAAGCACAAGGGCTTTGTGGTCTATGCAGGCGTGCGCAA
TGGCAAAGACGCCAAGGCTATCTCAGGCCTGAACATCCCGAATCTCCTGC
CGGTTACTCTGGACGTGACCAATGAGAGAAGCATCAATTCCGTGAAGAAA
ATAATCATGAAAGATCTGGCTTCCAAAGGAGACGTTGGAGGAAAGGAGGG
AGGAGGAGGAGCAGCAGCAGCAGGTCTGCCGCTTGTGGCCGTGGTGAACA
ATGCAGGCATTGCGGGGAGGTCTCCGTTGGAGTTTCATGCCATGGCTGCA
GTTGAAAAGATATTCCATGTGAATGTATTTGGGCTGCTGAGGGTGACGCA
GGTTTTCCTGCCCGAAATCAGGAAAAACAAGGGGCGTATAATCAACATCT
CCTCGGTCCTGGGTGCACTGACCATCGCCGACATGGGCGCCTACAGCGCA
AGCAAGCACGCGATGGAATCTTTGTCTGATGGCCTCCGACGGGAGCTCAG
GCCATTGGGTGTTAGCGTCAGGTATGTCAGTCCTCCCTACTTCTTTCTTC
CGTCCCTCCCTCTCTCCTCCTATCCTTTTCCCGTCCCATCCACATTCCTT
CCTCCCTCTCTCCCTCTCCCAAGCATCGTCCAACCCGGCATTGTCGTCTC
GGCCATCCACGACAAAGTCGCCTCCAGCTCCCCCGCCACCTCCTCCTCCG
ATTCCTCCCCCTCCGCCACGACCTACCCCCACATGTACACTCCCGAGAAA
CAGGCCGAGGGCAAGGCCTTCCTTCAGCAGGCGGCGTCCACGCGGGTGAC
TACTGCGGCGATTCTTGATTCTCTCTTTAATCCCCGCCCGCGCACTCGAT
ACCCTGTTGCGGCCGTGGGGCCCGTGCCCGCAGGCCTGCTGACATTCAAC
GCATATTTCTTGCCTGATCGCGTCACTGACTGGATGATGCAGTAGATGGC
TAACGCTACACCCAGCAAATCCGCGCCCCAAGCCTATGTCACTCCTTCTC
CTCCTGCTGCTCGTTCGTCCGCCCTCTTCGCTTCCTCTTCCTCTACCAAA
ACTACCAAGCCTGAGGCCGTCGGGGAGCTCTACCGGTTCCGCGTCTGGCA
CACTGCCCTCCTCCTCACCCTGGCCTTCCTCCTTGACATTCCCTTTCTTA
TTGATCGGCTCACAACAAAACAGTACACTGTGCATACGAAAGGGGGGGTG
TTAATCACTGGAGCAAGCACTGGAATCGGGAGAGATGCGGCCGTGGCGTT
GGCGATCAAGCACAAGGGCTTTGTGGTCTATGCAGGCGTGCGCAATGGCA
AAGACGCCAAGGCTATCTCAGGCCTGAACATCCCGAATCTCCTGCCGGTT
ACTCTGGACGTGACCAATGAGAGAAGCATCAATTCCGTGAAGAAAATAAT
CATGAAAGATCTGGCTTCCAAAGGAGACGTTGGAGGAAAGGAGGGAGGAG
GAGGAGCAGCAGCAGCAGGTCTGCCGCTTGTGGCCGTGGTGAACAATGCA
GGCATTGCGGGGAGGTCTCCGTTGGAGTTTCATGCCATGGCTGCAGTTGA
AAAGATATTCCATGTGAATGTATTTGGGCTGCTGAGGGTGACGCAGGTTT
TCCTGCCCGAAATCAGGAAAAACAAGGGGCGTATAATCAACATCTCCTCG
GTCCTGGGTGCACTGACCATCGCCGACATGGGCGCCTACAGCGCAAGCAA
GCACGCGATGGAATCTTTGTCTGATGGCCTCCGACGGGAGCTCAGGCCAT
TGGGTGTTAGCGTCAGGTATGTCAGTCCTCCCTACTTCTTTCTTCCGTCC
CTCCCTCTCTCCTCCTATCCTTTTCCCGTCCCATCCACATTCCTTCCTCC
CTCTCTCCCTCTCCCAAGCATCGTCCAACCCGGCATTGTCGTCTCGGCCA
TCCACGACAAAGTCGCCTCCAGCTCCCCCGCCACCTCCTCCTCCGATTCC
TCCCCCTCCGCCACGACCTACCCCCACATGTACACTCCCGAGAAACAGGC
CGAGGGCAAGGCCTTCCTTCAGCAGGCGGCGTCCACGCGGGTGACTACTG
CGGCGATTCTTGATTCTCTCTTTAATCCCCGCCCGCGCACTCGATACCCT
GTTGCGGCCGTGGGGCCCGTGCCCGCAGGCCTGCTGACATTCAACGCATA
TTTCTTGCCTGATCGCGTCACTGACTGGATGATGCAGTAGATGGCTAACG
CTACACCCAGCAAATCCGCGCCCCAAGCCTATGTCACTCCTTCTCCTCCT
GCTGCTCGTTCGTCCGCCCTCTTCGCTTCCTCTTCCTCTACCAAAACTAC
CAAGCCTGAGGCCGTCGGGGAGCTCTACCGGTTCCGCGTCTGGCACACTG
CCCTCCTCCTCACCCTGGCCTTCCTCCTTGACATTCCCTTTCTTATTGAT
CGGCTCACAACAAAACAGTACACTGTGCATACGAAAGGGGGGGTGTTAAT
CACTGGAGCAAGCACTGGAATCGGGAGAGATGCGGCCGTGGCGTTGGCGA
TCAAGCACAAGGGCTTTGTGGTCTATGCAGGCGTGCGCAATGGCAAAGAC
GCCAAGGCTATCTCAGGCCTGAACATCCCGAATCTCCTGCCGGTTACTCT
GGACGTGACCAATGAGAGAAGCATCAATTCCGTGAAGAAAATAATCATGA
AAGATCTGGCTTCCAAAGGAGACGTTGGAGGAAAGGAGGGAGGAGGAGGA
GCAGCAGCAGCAGGTCTGCCGCTTGTGGCCGTGGTGAACAATGCAGGCAT
TGCGGGGAGGTCTCCGTTGGAGTTTCATGCCATGGCTGCAGTTGAAAAGA
TATTCCATGTGAATGTATTTGGGCTGCTGAGGGTGACGCAGGTTTTCCTG
CCCGAAATCAGGAAAAACAAGGGGCGTATAATCAACATCTCCTCGGTCCT
GGGTGCACTGACCATCGCCGACATGGGCGCCTACAGCGCAAGCAAGCACG
CGATGGAATCTTTGTCTGATGGCCTCCGACGGGAGCTCAGGCCATTGGGT
GTTAGCGTCAGGTATGTCAGTCCTCCCTACTTCTTTCTTCCGTCCCTCCC
TCTCTCCTCCTATCCTTTTCCCGTCCCATCCACATTCCTTCCTCCCTCTC
TCCCTCTCCCAAGCATCGTCCAACCCGGCATTGTCGTCTCGGCCATCCAC
GACAAAGTCGCCTCCAGCTCCCCCGCCACCTCCTCCTCCGATTCCTCCCC
CTCCGCCACGACCTACCCCCACATGTACACTCCCGAGAAACAGGCCGAGG
GCAAGGCCTTCCTTCAGCAGGCGGCGTCCACGCGGGTGACTACTGCGGCG
ATTCTTGATTCTCTCTTTAATCCCCGCCCGCGCACTCGATACCCTGTTGC
GGCCGTGGGGCCCGTGCCCGCAGGCCTGCTGACATTCAACGCATATTTCT
TGCCTGATCGCGTCACTGACTGGATGATGCAGTAG

Synonyms

Publications