jgi.p|Nanoce1779_2|586737, mRNA_4154 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586737
Unique NamemRNA_4154
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1402
Alignment locationscaffold_8:968338..969739 -

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Properties
Property NameValue
TranscriptId586823
TrackFilteredModels2
ProteinId586737
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:968338..969739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586737gene_4154Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586737mRNA_4154-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4154CDS_4154Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4154 ID=mRNA_4154|Name=jgi.p|Nanoce1779_2|586737|organism=Nannochloropsis oceanica|type=mRNA|length=1402bp
AAAAAACCAGCACAGGCCAGCCTCTCCCTTTCTCTTCCCATTCAAGCCCT
ACCAAAACCATGACGACCAGCCCCAGCAAAGCCGCGCAACATGCGACCAA
CACCAAGCATATCGCCTCGGTAGTAGGAGCCTACTGGCTCGTCTCCATCA
GCATGGTCTATCTCAATAAGGTCTTGATGACGAACACGGAACTCTCCATC
CCCGCCCCCCTTTTCGTCACCTGGTTCCAATGCCTCTTCACTACAGGTCT
TTGCTACTTGTGCGGGGAGCTCGGCGAAGTCCAACGACGGAAAGGCAAGA
CTACAGGGTACTTTAATCAGTTCCCTGCCATGCGATACAACTGGACGGTG
GCTCGTAAGATTGGGGTGTTGTCATTGGTCTTCGTGGGGATGGTGACCTT
CAATAACCTCTGCTTGAAGTACGTGGAGGTCTCGTTCTATAACGTGGCCA
GGTCCTTAACGATTGTCTTCAATGTCTTCTTATCGTTTGCGATCCTGAGG
ATGACTGTATCCGGGCCCACCTTGGCGTGTCTTGTGTTGGTTTTCCTCGG
TTTCTGGGTCGGGGCGGACGGAGAGGCCAATTTCTCCCTTGTGGGCACTC
TATCAGGGGTATGCTCCTCCCTCTTCGTGAGCTTAAACAGCATCTACACC
AAGAAAGTCTTGCCTGTCGTGAACGACAATCAATGGGTGCTGACGTTCGT
AAACAACATGAACGCCTGCCTTCTCTTCCTACCCCTCATCCTTTTCCTTG
AACTTCCGACTCTTCTCGAGCACTGGTCGAAGTTTTTCTCTCCTCTCTTC
TGGGCCGGCATGTCCCTCTCCGGCCTTCTCGGCTTCGCGATCGGGACTGT
GACAGTGATGCAAATCAAGGCTACGTCCCCGTTGACTCATAACATCAGCG
GTACGGCCAAGGCTGCCTTTCAATCGATCTTGGCCTTCTATTTGTGGGGG
AACCCAGCCACGACGAAGAGTCTGGTGGGCATCGCCCTGGTCCTGGGAGG
CTCCTCATGCTATACATACGTGGCGATGAAGGACGCCGAGAGAAAGCGGC
GGGCGAGTGGAGTAAGTGGGATAGGACGAGAAGGAGGGGCTGGGGGAGGA
GCGGCGGGAACGAGCCCGTTATTGCCCGTGAAAAGCCCGGCGGACGCGGG
AGGAGTGATGGGGGTAGGCGTGAAGTTGATGGGGGCTTAGGGCGATCTGG
GTCTCGCAAATGGTTAGGGGCCGTGGGAAATACACGATGCAGACCAAGAC
CGTGAGGAAGGGGTCTGAGGAGAGGGAGGAAAAAACGGAAGGGAGGGGAG
GAGAGTAGATTGTATATTTCAAGAAGGAAGGAGAGAACATGAGGAGGAAA
GGGATAGGGAACGAGGCAAGGGAAGAAGAAAAAGTATCATTTCAGAGGCG
AA
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protein sequence of jgi.p|Nanoce1779_2|586737

>mRNA_4154-protein ID=mRNA_4154-protein|Name=jgi.p|Nanoce1779_2|586737|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MTTSPSKAAQHATNTKHIASVVGAYWLVSISMVYLNKVLMTNTELSIPAP
LFVTWFQCLFTTGLCYLCGELGEVQRRKGKTTGYFNQFPAMRYNWTVARK
IGVLSLVFVGMVTFNNLCLKYVEVSFYNVARSLTIVFNVFLSFAILRMTV
SGPTLACLVLVFLGFWVGADGEANFSLVGTLSGVCSSLFVSLNSIYTKKV
LPVVNDNQWVLTFVNNMNACLLFLPLILFLELPTLLEHWSKFFSPLFWAG
MSLSGLLGFAIGTVTVMQIKATSPLTHNISGTAKAAFQSILAFYLWGNPA
TTKSLVGIALVLGGSSCYTYVAMKDAERKRRASGVSGIGREGGAGGGAAG
TSPLLPVKSPADAGGVMGVGVKLMGA*
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mRNA from alignment at scaffold_8:968338..969739-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4154 ID=mRNA_4154|Name=jgi.p|Nanoce1779_2|586737|organism=Nannochloropsis oceanica|type=mRNA|length=1402bp|location=Sequence derived from alignment at scaffold_8:968338..969739- (Nannochloropsis oceanica)
AAAAAACCAGCACAGGCCAGCCTCTCCCTTTCTCTTCCCATTCAAGCCCT
ACCAAAACCATGACGACCAGCCCCAGCAAAGCCGCGCAACATGCGACCAA
CACCAAGCATATCGCCTCGGTAGTAGGAGCCTACTGGCTCGTCTCCATCA
GCATGGTCTATCTCAATAAGGTCTTGATGACGAACACGGAACTCTCCATC
CCCGCCCCCCTTTTCGTCACCTGGTTCCAATGCCTCTTCACTACAGGTCT
TTGCTACTTGTGCGGGGAGCTCGGCGAAGTCCAACGACGGAAAGGCAAGA
CTACAGGGTACTTTAATCAGTTCCCTGCCATGCGATACAACTGGACGGTG
GCTCGTAAGATTGGGGTGTTGTCATTGGTCTTCGTGGGGATGGTGACCTT
CAATAACCTCTGCTTGAAGTACGTGGAGGTCTCGTTCTATAACGTGGCCA
GGTCCTTAACGATTGTCTTCAATGTCTTCTTATCGTTTGCGATCCTGAGG
ATGACTGTATCCGGGCCCACCTTGGCGTGTCTTGTGTTGGTTTTCCTCGG
TTTCTGGGTCGGGGCGGACGGAGAGGCCAATTTCTCCCTTGTGGGCACTC
TATCAGGGGTATGCTCCTCCCTCTTCGTGAGCTTAAACAGCATCTACACC
AAGAAAGTCTTGCCTGTCGTGAACGACAATCAATGGGTGCTGACGTTCGT
AAACAACATGAACGCCTGCCTTCTCTTCCTACCCCTCATCCTTTTCCTTG
AACTTCCGACTCTTCTCGAGCACTGGTCGAAGTTTTTCTCTCCTCTCTTC
TGGGCCGGCATGTCCCTCTCCGGCCTTCTCGGCTTCGCGATCGGGACTGT
GACAGTGATGCAAATCAAGGCTACGTCCCCGTTGACTCATAACATCAGCG
GTACGGCCAAGGCTGCCTTTCAATCGATCTTGGCCTTCTATTTGTGGGGG
AACCCAGCCACGACGAAGAGTCTGGTGGGCATCGCCCTGGTCCTGGGAGG
CTCCTCATGCTATACATACGTGGCGATGAAGGACGCCGAGAGAAAGCGGC
GGGCGAGTGGAGTAAGTGGGATAGGACGAGAAGGAGGGGCTGGGGGAGGA
GCGGCGGGAACGAGCCCGTTATTGCCCGTGAAAAGCCCGGCGGACGCGGG
AGGAGTGATGGGGGTAGGCGTGAAGTTGATGGGGGCTTAGGGCGATCTGG
GTCTCGCAAATGGTTAGGGGCCGTGGGAAATACACGATGCAGACCAAGAC
CGTGAGGAAGGGGTCTGAGGAGAGGGAGGAAAAAACGGAAGGGAGGGGAG
GAGAGTAGATTGTATATTTCAAGAAGGAAGGAGAGAACATGAGGAGGAAA
GGGATAGGGAACGAGGCAAGGGAAGAAGAAAAAGTATCATTTCAGAGGCG
AA
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Coding sequence (CDS) from alignment at scaffold_8:968338..969739-

>mRNA_4154 ID=mRNA_4154|Name=jgi.p|Nanoce1779_2|586737|organism=Nannochloropsis oceanica|type=CDS|length=1131bp|location=Sequence derived from alignment at scaffold_8:968338..969739- (Nannochloropsis oceanica)
ATGACGACCAGCCCCAGCAAAGCCGCGCAACATGCGACCAACACCAAGCA
TATCGCCTCGGTAGTAGGAGCCTACTGGCTCGTCTCCATCAGCATGGTCT
ATCTCAATAAGGTCTTGATGACGAACACGGAACTCTCCATCCCCGCCCCC
CTTTTCGTCACCTGGTTCCAATGCCTCTTCACTACAGGTCTTTGCTACTT
GTGCGGGGAGCTCGGCGAAGTCCAACGACGGAAAGGCAAGACTACAGGGT
ACTTTAATCAGTTCCCTGCCATGCGATACAACTGGACGGTGGCTCGTAAG
ATTGGGGTGTTGTCATTGGTCTTCGTGGGGATGGTGACCTTCAATAACCT
CTGCTTGAAGTACGTGGAGGTCTCGTTCTATAACGTGGCCAGGTCCTTAA
CGATTGTCTTCAATGTCTTCTTATCGTTTGCGATCCTGAGGATGACTGTA
TCCGGGCCCACCTTGGCGTGTCTTGTGTTGGTTTTCCTCGGTTTCTGGGT
CGGGGCGGACGGAGAGGCCAATTTCTCCCTTGTGGGCACTCTATCAGGGG
TATGCTCCTCCCTCTTCGTGAGCTTAAACAGCATCTACACCAAGAAAGTC
TTGCCTGTCGTGAACGACAATCAATGGGTGCTGACGTTCGTAAACAACAT
GAACGCCTGCCTTCTCTTCCTACCCCTCATCCTTTTCCTTGAACTTCCGA
CTCTTCTCGAGCACTGGTCGAAGTTTTTCTCTCCTCTCTTCTGGGCCGGC
ATGTCCCTCTCCGGCCTTCTCGGCTTCGCGATCGGGACTGTGACAGTGAT
GCAAATCAAGGCTACGTCCCCGTTGACTCATAACATCAGCGGTACGGCCA
AGGCTGCCTTTCAATCGATCTTGGCCTTCTATTTGTGGGGGAACCCAGCC
ACGACGAAGAGTCTGGTGGGCATCGCCCTGGTCCTGGGAGGCTCCTCATG
CTATACATACGTGGCGATGAAGGACGCCGAGAGAAAGCGGCGGGCGAGTG
GAGTAAGTGGGATAGGACGAGAAGGAGGGGCTGGGGGAGGAGCGGCGGGA
ACGAGCCCGTTATTGCCCGTGAAAAGCCCGGCGGACGCGGGAGGAGTGAT
GGGGGTAGGCGTGAAGTTGATGGGGGCTTAG
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Synonyms
Publications