jgi.p|Nanoce1779_2|586735, mRNA_4153 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586735
Unique NamemRNA_4153
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length556
Alignment locationscaffold_8:967752..968307 -

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Properties
Property NameValue
TranscriptId586821
TrackFilteredModels2
ProteinId586735
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:967752..968307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586735gene_4153Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586735mRNA_4153-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4153CDS_4153Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4153 ID=mRNA_4153|Name=jgi.p|Nanoce1779_2|586735|organism=Nannochloropsis oceanica|type=mRNA|length=556bp
CTTTCATTTACTTTTCGAAGTTTTTTTCCCGTCTTTCTTTATTGCATGGA
TTGTCGCAAGTTCACCTCATCACCTGAGCTCGTTATGGCCAGGATAAGAT
TAGTGTTATACGTGTGTGTACAGAGACCGAGAAGAGTCTTTCATATTTCA
CTCATTTTTTACATCAAATACATGCAGATGCTCTGCACACAGAGAATTCG
GTCCCACGACACAACCTTTTCTGCCTGTCATACCCTCGTCCACCTGATGA
CGTTGCCGTTTTCTGTCTCTTTTACGCCCCTCCTTCCTCTCCTGCTCCTC
CTGTTTTCTCATGAGCGACAGCCGCGACTCAAATGCTGTGAATCTCGAAT
TTCCCCGTTTACAGTTGCTTTCCTCTTCCTCCAATCCCTCCCCTTTCTCT
TCTTCTACCCCACCCTCCTCCTACTCCTCCTCCATCTCCTCCAAATTTTC
CTACCTCCTTCTCATCCTCTCCTCTGTATTGATCCTCCGCCTCCTGCTTT
ACGAGGAGAGCTCCTACGCTGCTGCTGCTGCTGCTGATGTTGAGGTTGAC
TTCCTT
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protein sequence of jgi.p|Nanoce1779_2|586735

>mRNA_4153-protein ID=mRNA_4153-protein|Name=jgi.p|Nanoce1779_2|586735|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MDCRKFTSSPELVMARIRLVLYVCVQRPRRVFHISLIFYIKYMQMLCTQR
IRSHDTTFSACHTLVHLMTLPFSVSFTPLLPLLLLLFSHERQPRLKCCES
RISPFTVAFLFLQSLPFLFFYPTLLLLLLHLLQIFLPPSHPLLCIDPPPP
ALRGELLRCCCCC*
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mRNA from alignment at scaffold_8:967752..968307-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4153 ID=mRNA_4153|Name=jgi.p|Nanoce1779_2|586735|organism=Nannochloropsis oceanica|type=mRNA|length=556bp|location=Sequence derived from alignment at scaffold_8:967752..968307- (Nannochloropsis oceanica)
CTTTCATTTACTTTTCGAAGTTTTTTTCCCGTCTTTCTTTATTGCATGGA
TTGTCGCAAGTTCACCTCATCACCTGAGCTCGTTATGGCCAGGATAAGAT
TAGTGTTATACGTGTGTGTACAGAGACCGAGAAGAGTCTTTCATATTTCA
CTCATTTTTTACATCAAATACATGCAGATGCTCTGCACACAGAGAATTCG
GTCCCACGACACAACCTTTTCTGCCTGTCATACCCTCGTCCACCTGATGA
CGTTGCCGTTTTCTGTCTCTTTTACGCCCCTCCTTCCTCTCCTGCTCCTC
CTGTTTTCTCATGAGCGACAGCCGCGACTCAAATGCTGTGAATCTCGAAT
TTCCCCGTTTACAGTTGCTTTCCTCTTCCTCCAATCCCTCCCCTTTCTCT
TCTTCTACCCCACCCTCCTCCTACTCCTCCTCCATCTCCTCCAAATTTTC
CTACCTCCTTCTCATCCTCTCCTCTGTATTGATCCTCCGCCTCCTGCTTT
ACGAGGAGAGCTCCTACGCTGCTGCTGCTGCTGCTGATGTTGAGGTTGAC
TTCCTT
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Coding sequence (CDS) from alignment at scaffold_8:967752..968307-

>mRNA_4153 ID=mRNA_4153|Name=jgi.p|Nanoce1779_2|586735|organism=Nannochloropsis oceanica|type=CDS|length=492bp|location=Sequence derived from alignment at scaffold_8:967752..968307- (Nannochloropsis oceanica)
ATGGATTGTCGCAAGTTCACCTCATCACCTGAGCTCGTTATGGCCAGGAT
AAGATTAGTGTTATACGTGTGTGTACAGAGACCGAGAAGAGTCTTTCATA
TTTCACTCATTTTTTACATCAAATACATGCAGATGCTCTGCACACAGAGA
ATTCGGTCCCACGACACAACCTTTTCTGCCTGTCATACCCTCGTCCACCT
GATGACGTTGCCGTTTTCTGTCTCTTTTACGCCCCTCCTTCCTCTCCTGC
TCCTCCTGTTTTCTCATGAGCGACAGCCGCGACTCAAATGCTGTGAATCT
CGAATTTCCCCGTTTACAGTTGCTTTCCTCTTCCTCCAATCCCTCCCCTT
TCTCTTCTTCTACCCCACCCTCCTCCTACTCCTCCTCCATCTCCTCCAAA
TTTTCCTACCTCCTTCTCATCCTCTCCTCTGTATTGATCCTCCGCCTCCT
GCTTTACGAGGAGAGCTCCTACGCTGCTGCTGCTGCTGCTGA
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Synonyms
Publications