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Properties
| Property Name | Value |
|---|
| TranscriptId | 586806 |
| Track | FilteredModels2 |
| ProteinId | 586720 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:954394..956528 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4150 ID=mRNA_4150|Name=jgi.p|Nanoce1779_2|586720|organism=Nannochloropsis oceanica|type=mRNA|length=1368bp
ACAACAGGCAACACAGAACATCGGGCCCCTGCTCCACCCTCCCCTGCTCC
TCTACATATATACATTGTCGGAGCTCCCTCCGCATCCAGCAAGACCATGA
TGTCCCACCACGATCACGATCACGACAAACCGTATTCCGGCAACCGGCGG
CGCCTTAGCAGCCACCATTCCTCTTCTGCGGATGACAATAAAGCGGGTTG
GGCTATATTGGGCAGCGCTACCATTGCGCACAAGCTGTGGAAAGCCATAC
GCATGAGCGGGAATTCACGCGTGGTCTGCGTAGCCTCCCGGGATTTTTGT
CGGGCCCAGGATTTTATAGACGAGTGCCAAGCCCAAGTGCCCTTTCCGGA
CGCACCCGAGGCCGTGGAGGGGTACGCAGCGGCCTTGGCGCGGGACGATG
TGGATGTGGTGTACATCCCTTTGCCTACTGCCCTGCGGAAGGAATGGGTG
CTGAAGGCAGCGGCGTCGGGGAAGCATGTATTGGTGGAAAAGCCGGTAGG
CCTCACGACAGAGGATGTGCAGGAGATGATCCAGGCTTGCATCAAGCACA
ACGTCCACCTCATGGACGGGGTCATGTTTGTGCACTCCGCCCGCCTGCCC
CTCCTCCACCACACCCTGCCCTCCCTCGGCGCCCTCAAGAGGATCAACAC
GGAGTTTTGCTTCAAGGCCGACGACGATTTCTTCAAAAGCAACATTCGTT
GCTCTAGCGCCACAGAGCCTTTGGGATGCCTAGGGGATTTGGGGTGGTAC
AACATTCGCTTTACCCTCTGGGCACTCGATTGGCTCCTGCCCATCCGCGC
CCGTGGGTGTATCCACGCGGCGAATGAGGAGGGAGTACCTTACGAGTTCT
CCGCCGAGTTGATATTTGACTATGGGTGCTCGGCGACGTTCTTTTGCTCT
TTCTTGACGCATGAGACACAGCTTGCGGTTCTAAACGGCGAGAAGGCGTC
GATCCAGCTGAAAGACTTTGTCTTGCCCGTCCCCGGCCGGTATCTTTCCT
TCGATATCAATCGCCAATGCTTTAAACACGAGGGGCTCGACCAGGTCGTG
CACTCGTACACCGAGAAGCTCCACGTTAGCGAGGCCTCGCACGGGCACCC
GTCCTCTCAAGAAGCCTGCATGGTCCGCCTTCTTTCGAACCTGTCGAGGG
AAGGCGGGGGGGAGACAACCAAGTGGCCAGAGCAGATGTTGAAGACTCAG
ATGGTGCTGGACGCGGTACTGATGAGTGCCAAGGAGAGGGACGGAGGGTG
GGTGGAGATGGAGGGGGGAAAATAAAGGCAAGCAGGGATGGAGGGAGGGA
GGGAGGAAGGGAGAGACGGGCGAGGACGAATATTTACAAGGAGAGAATCA
ATAAATTGATTGGTACAA back to topprotein sequence of jgi.p|Nanoce1779_2|586720 >mRNA_4150-protein ID=mRNA_4150-protein|Name=jgi.p|Nanoce1779_2|586720|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MMSHHDHDHDKPYSGNRRRLSSHHSSSADDNKAGWAILGSATIAHKLWKA
IRMSGNSRVVCVASRDFCRAQDFIDECQAQVPFPDAPEAVEGYAAALARD
DVDVVYIPLPTALRKEWVLKAAASGKHVLVEKPVGLTTEDVQEMIQACIK
HNVHLMDGVMFVHSARLPLLHHTLPSLGALKRINTEFCFKADDDFFKSNI
RCSSATEPLGCLGDLGWYNIRFTLWALDWLLPIRARGCIHAANEEGVPYE
FSAELIFDYGCSATFFCSFLTHETQLAVLNGEKASIQLKDFVLPVPGRYL
SFDINRQCFKHEGLDQVVHSYTEKLHVSEASHGHPSSQEACMVRLLSNLS
REGGGETTKWPEQMLKTQMVLDAVLMSAKERDGGWVEMEGGK* back to topmRNA from alignment at scaffold_8:954394..956528- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4150 ID=mRNA_4150|Name=jgi.p|Nanoce1779_2|586720|organism=Nannochloropsis oceanica|type=mRNA|length=2135bp|location=Sequence derived from alignment at scaffold_8:954394..956528- (Nannochloropsis oceanica)
ACAACAGGCAACACAGAACATCGGGCCCCTGCTCCACCCTCCCCTGCTCC
TCTACATATATACATTGTCGGAGCTCCCTCCGCATCCAGCAAGACCATGA
TGTCCCACCACGATCACGATCACGACAAACCGTATTCCGGCAACCGGCGG
CGCCTTAGCAGCCACCATTCCTCTTCTGCGGATGACAATAAAGCGGGTTG
GGCTATATTGGGCAGCGCTACCATTGCGCACAAGCTGTGGAAAGCCATAC
GCATGAGCGGGAATTCACGCGTGGTCTGCGTAGCCTCCCGGGATTTTTGT
CGGGCCCAGGATTTTATAGACGAGTGCCAAGCCCAAGTGCCCTTTCCGGA
CGCACCCGAGGCCGTGGAGGGGTACGCAGCGGCCTTGGCGCGGGACGATG
TGGATGTGGTGTACATCCCTTTGCCTACTGCCCTGCGGAAGGAATGGGTG
CTGAAGGCAGCGGCGTCGGGGAAGCATGTATTGGTGGAAAAGCCGGTAGG
CCTCACGACAGAGGATGTGCAGGAGATGATCCAGGCTTGCATCAAGGTAA
CAATTGGGGTACAATAACGATTTGAGGGATTTAACGAAGGGGGTAGATGG
AAAGGAGGGATGAAACACTTTTTTAAAAAGCGGGTTCTAGTACACACTCA
TGCCACCCTTCCCTTCCCTTCCTCCCTCCTCCCTTTTCTACCCCCAGCAC
AACGTCCACCTCATGGACGGGGTCATGTTTGTGCACTCCGCCCGCCTGCC
CCTCCTCCACCACACCCTGCCCTCCCTCGGCGCCCTCAAGAGGATCAACA
CGGAGTTTTGCTTCAAGGCCGACGACGATTTCTTCAAAAGCAACATTCGT
TGCTCTAGCGCCACAGAGCCTTTGGGATGCCTAGGGGATTTGGGGTAAGT
CACTGAAGGATAGCAGAGTGGGGGATGACGGGTATGAAGACCTAAACCTC
TTTGTTTCTGTGGCGGTGCTACGTCGAAGTAAATGATAGAAGAAAAGAGA
AGTCTTGGTTTTCTAGCGCCTCTAATTCACACCCCCATATCCCCGGCCTC
CTCCCCTTGCCTCCTCTACCCATCCTCTCTCCCTCCCACCTCTCCCTCCT
CCTAGGTGGTACAACATTCTCTAGCGCCTCTAATTCACATCCCCATATCC
CCGGGCTCCCCCCCTTGCCTCCTCCACCCATCCTCTCCCCCTCCCACCTC
TCCCTTCTCCTAGGTGGTACAACATTCGCTTTACCCTCTGGGCACTCGAT
TGGCTCCTGCCCATCCGCGCCCGTGGGTGTATCCACGCGGCGAATGAGGA
GGGAGTACCTTACGAGTTCTCCGCCGAGTTGATATTTGACTATGGGTGCT
CGGCGACGTTCTTTTGCTCTTTCTTGACGCATGAGACACAGCTTGCGGTA
GGTGTTGTTCAACACGGGTGGTGGATGTTTCCCTTGATTGTGTTCGTCCC
TCTTCTCGCTCTTGATCTCAATCACTTACCGGACCACCCCCGCTTAACTT
CCTCCCTCCATTCCCGTCCTCCACTCCCTAGGTTCTAAACGGCGAGAAGG
CGTCGATCCAGCTGAAAGACTTTGTCTTGCCCGTCCCCGGCCGGTATCTT
TCCTTCGATATCAATCGCCAATGCTTTAAACACGAGGGGCTCGACCAGGT
AGGAATAGAGGGAGGGAGGGGGAAAGGAGTGAAGGAGGAAGGGAGGAAAG
GCGGGATAAACTATACTTCGTCGCTGTATGACAGGATGAGGTAATCTCCT
AAATAGCCCTCCCTCCATCCATTCATCCATCCCTCCCTCCATCCCTCCGT
CCCTCCCTCAGGTCGTGCACTCGTACACCGAGAAGCTCCACGTTAGCGAG
GCCTCGCACGGGCACCCGTCCTCTCAAGAAGCCTGCATGGTCCGCCTTCT
TTCGAACCTGTCGAGGGAAGGCGGGGGGGAGACAACCAAGTGGCCAGAGC
AGATGTTGAAGACTCAGATGGTGCTGGACGCGGTACTGATGAGTGCCAAG
GAGAGGGACGGAGGGTGGGTGGAGATGGAGGGGGGAAAATAAAGGCAAGC
AGGGATGGAGGGAGGGAGGGAGGAAGGGAGAGACGGGCGAGGACGAATAT
TTACAAGGAGAGAATCAATAAATTGATTGGTACAA back to topCoding sequence (CDS) from alignment at scaffold_8:954394..956528- >mRNA_4150 ID=mRNA_4150|Name=jgi.p|Nanoce1779_2|586720|organism=Nannochloropsis oceanica|type=CDS|length=5895bp|location=Sequence derived from alignment at scaffold_8:954394..956528- (Nannochloropsis oceanica)
GTCGTGCACTCGTACACCGAGAAGCTCCACGTTAGCGAGGCCTCGCACGG
GCACCCGTCCTCTCAAGAAGCCTGCATGGTCCGCCTTCTTTCGAACCTGT
CGAGGGAAGGCGGGGGGGAGACAACCAAGTGGCCAGAGCAGATGTTGAAG
ACTCAGATGGTGCTGGACGCGGTACTGATGAGTGCCAAGGAGAGGGACGG
AGGGTGGGTGGAGATGGAGGGGGGAAAATAAGTTCTAAACGGCGAGAAGG
CGTCGATCCAGCTGAAAGACTTTGTCTTGCCCGTCCCCGGCCGGTATCTT
TCCTTCGATATCAATCGCCAATGCTTTAAACACGAGGGGCTCGACCAGGT
GGTACAACATTCGCTTTACCCTCTGGGCACTCGATTGGCTCCTGCCCATC
CGCGCCCGTGGGTGTATCCACGCGGCGAATGAGGAGGGAGTACCTTACGA
GTTCTCCGCCGAGTTGATATTTGACTATGGGTGCTCGGCGACGTTCTTTT
GCTCTTTCTTGACGCATGAGACACAGCTTGCGCACAACGTCCACCTCATG
GACGGGGTCATGTTTGTGCACTCCGCCCGCCTGCCCCTCCTCCACCACAC
CCTGCCCTCCCTCGGCGCCCTCAAGAGGATCAACACGGAGTTTTGCTTCA
AGGCCGACGACGATTTCTTCAAAAGCAACATTCGTTGCTCTAGCGCCACA
GAGCCTTTGGGATGCCTAGGGGATTTGGGATGATGTCCCACCACGATCAC
GATCACGACAAACCGTATTCCGGCAACCGGCGGCGCCTTAGCAGCCACCA
TTCCTCTTCTGCGGATGACAATAAAGCGGGTTGGGCTATATTGGGCAGCG
CTACCATTGCGCACAAGCTGTGGAAAGCCATACGCATGAGCGGGAATTCA
CGCGTGGTCTGCGTAGCCTCCCGGGATTTTTGTCGGGCCCAGGATTTTAT
AGACGAGTGCCAAGCCCAAGTGCCCTTTCCGGACGCACCCGAGGCCGTGG
AGGGGTACGCAGCGGCCTTGGCGCGGGACGATGTGGATGTGGTGTACATC
CCTTTGCCTACTGCCCTGCGGAAGGAATGGGTGCTGAAGGCAGCGGCGTC
GGGGAAGCATGTATTGGTGGAAAAGCCGGTAGGCCTCACGACAGAGGATG
TGCAGGAGATGATCCAGGCTTGCATCAAGGTCGTGCACTCGTACACCGAG
AAGCTCCACGTTAGCGAGGCCTCGCACGGGCACCCGTCCTCTCAAGAAGC
CTGCATGGTCCGCCTTCTTTCGAACCTGTCGAGGGAAGGCGGGGGGGAGA
CAACCAAGTGGCCAGAGCAGATGTTGAAGACTCAGATGGTGCTGGACGCG
GTACTGATGAGTGCCAAGGAGAGGGACGGAGGGTGGGTGGAGATGGAGGG
GGGAAAATAAGTTCTAAACGGCGAGAAGGCGTCGATCCAGCTGAAAGACT
TTGTCTTGCCCGTCCCCGGCCGGTATCTTTCCTTCGATATCAATCGCCAA
TGCTTTAAACACGAGGGGCTCGACCAGGTGGTACAACATTCGCTTTACCC
TCTGGGCACTCGATTGGCTCCTGCCCATCCGCGCCCGTGGGTGTATCCAC
GCGGCGAATGAGGAGGGAGTACCTTACGAGTTCTCCGCCGAGTTGATATT
TGACTATGGGTGCTCGGCGACGTTCTTTTGCTCTTTCTTGACGCATGAGA
CACAGCTTGCGCACAACGTCCACCTCATGGACGGGGTCATGTTTGTGCAC
TCCGCCCGCCTGCCCCTCCTCCACCACACCCTGCCCTCCCTCGGCGCCCT
CAAGAGGATCAACACGGAGTTTTGCTTCAAGGCCGACGACGATTTCTTCA
AAAGCAACATTCGTTGCTCTAGCGCCACAGAGCCTTTGGGATGCCTAGGG
GATTTGGGATGATGTCCCACCACGATCACGATCACGACAAACCGTATTCC
GGCAACCGGCGGCGCCTTAGCAGCCACCATTCCTCTTCTGCGGATGACAA
TAAAGCGGGTTGGGCTATATTGGGCAGCGCTACCATTGCGCACAAGCTGT
GGAAAGCCATACGCATGAGCGGGAATTCACGCGTGGTCTGCGTAGCCTCC
CGGGATTTTTGTCGGGCCCAGGATTTTATAGACGAGTGCCAAGCCCAAGT
GCCCTTTCCGGACGCACCCGAGGCCGTGGAGGGGTACGCAGCGGCCTTGG
CGCGGGACGATGTGGATGTGGTGTACATCCCTTTGCCTACTGCCCTGCGG
AAGGAATGGGTGCTGAAGGCAGCGGCGTCGGGGAAGCATGTATTGGTGGA
AAAGCCGGTAGGCCTCACGACAGAGGATGTGCAGGAGATGATCCAGGCTT
GCATCAAGGTCGTGCACTCGTACACCGAGAAGCTCCACGTTAGCGAGGCC
TCGCACGGGCACCCGTCCTCTCAAGAAGCCTGCATGGTCCGCCTTCTTTC
GAACCTGTCGAGGGAAGGCGGGGGGGAGACAACCAAGTGGCCAGAGCAGA
TGTTGAAGACTCAGATGGTGCTGGACGCGGTACTGATGAGTGCCAAGGAG
AGGGACGGAGGGTGGGTGGAGATGGAGGGGGGAAAATAAGTTCTAAACGG
CGAGAAGGCGTCGATCCAGCTGAAAGACTTTGTCTTGCCCGTCCCCGGCC
GGTATCTTTCCTTCGATATCAATCGCCAATGCTTTAAACACGAGGGGCTC
GACCAGGTGGTACAACATTCGCTTTACCCTCTGGGCACTCGATTGGCTCC
TGCCCATCCGCGCCCGTGGGTGTATCCACGCGGCGAATGAGGAGGGAGTA
CCTTACGAGTTCTCCGCCGAGTTGATATTTGACTATGGGTGCTCGGCGAC
GTTCTTTTGCTCTTTCTTGACGCATGAGACACAGCTTGCGCACAACGTCC
ACCTCATGGACGGGGTCATGTTTGTGCACTCCGCCCGCCTGCCCCTCCTC
CACCACACCCTGCCCTCCCTCGGCGCCCTCAAGAGGATCAACACGGAGTT
TTGCTTCAAGGCCGACGACGATTTCTTCAAAAGCAACATTCGTTGCTCTA
GCGCCACAGAGCCTTTGGGATGCCTAGGGGATTTGGGATGATGTCCCACC
ACGATCACGATCACGACAAACCGTATTCCGGCAACCGGCGGCGCCTTAGC
AGCCACCATTCCTCTTCTGCGGATGACAATAAAGCGGGTTGGGCTATATT
GGGCAGCGCTACCATTGCGCACAAGCTGTGGAAAGCCATACGCATGAGCG
GGAATTCACGCGTGGTCTGCGTAGCCTCCCGGGATTTTTGTCGGGCCCAG
GATTTTATAGACGAGTGCCAAGCCCAAGTGCCCTTTCCGGACGCACCCGA
GGCCGTGGAGGGGTACGCAGCGGCCTTGGCGCGGGACGATGTGGATGTGG
TGTACATCCCTTTGCCTACTGCCCTGCGGAAGGAATGGGTGCTGAAGGCA
GCGGCGTCGGGGAAGCATGTATTGGTGGAAAAGCCGGTAGGCCTCACGAC
AGAGGATGTGCAGGAGATGATCCAGGCTTGCATCAAGGTCGTGCACTCGT
ACACCGAGAAGCTCCACGTTAGCGAGGCCTCGCACGGGCACCCGTCCTCT
CAAGAAGCCTGCATGGTCCGCCTTCTTTCGAACCTGTCGAGGGAAGGCGG
GGGGGAGACAACCAAGTGGCCAGAGCAGATGTTGAAGACTCAGATGGTGC
TGGACGCGGTACTGATGAGTGCCAAGGAGAGGGACGGAGGGTGGGTGGAG
ATGGAGGGGGGAAAATAAGTTCTAAACGGCGAGAAGGCGTCGATCCAGCT
GAAAGACTTTGTCTTGCCCGTCCCCGGCCGGTATCTTTCCTTCGATATCA
ATCGCCAATGCTTTAAACACGAGGGGCTCGACCAGGTGGTACAACATTCG
CTTTACCCTCTGGGCACTCGATTGGCTCCTGCCCATCCGCGCCCGTGGGT
GTATCCACGCGGCGAATGAGGAGGGAGTACCTTACGAGTTCTCCGCCGAG
TTGATATTTGACTATGGGTGCTCGGCGACGTTCTTTTGCTCTTTCTTGAC
GCATGAGACACAGCTTGCGCACAACGTCCACCTCATGGACGGGGTCATGT
TTGTGCACTCCGCCCGCCTGCCCCTCCTCCACCACACCCTGCCCTCCCTC
GGCGCCCTCAAGAGGATCAACACGGAGTTTTGCTTCAAGGCCGACGACGA
TTTCTTCAAAAGCAACATTCGTTGCTCTAGCGCCACAGAGCCTTTGGGAT
GCCTAGGGGATTTGGGATGATGTCCCACCACGATCACGATCACGACAAAC
CGTATTCCGGCAACCGGCGGCGCCTTAGCAGCCACCATTCCTCTTCTGCG
GATGACAATAAAGCGGGTTGGGCTATATTGGGCAGCGCTACCATTGCGCA
CAAGCTGTGGAAAGCCATACGCATGAGCGGGAATTCACGCGTGGTCTGCG
TAGCCTCCCGGGATTTTTGTCGGGCCCAGGATTTTATAGACGAGTGCCAA
GCCCAAGTGCCCTTTCCGGACGCACCCGAGGCCGTGGAGGGGTACGCAGC
GGCCTTGGCGCGGGACGATGTGGATGTGGTGTACATCCCTTTGCCTACTG
CCCTGCGGAAGGAATGGGTGCTGAAGGCAGCGGCGTCGGGGAAGCATGTA
TTGGTGGAAAAGCCGGTAGGCCTCACGACAGAGGATGTGCAGGAGATGAT
CCAGGCTTGCATCAAGGTCGTGCACTCGTACACCGAGAAGCTCCACGTTA
GCGAGGCCTCGCACGGGCACCCGTCCTCTCAAGAAGCCTGCATGGTCCGC
CTTCTTTCGAACCTGTCGAGGGAAGGCGGGGGGGAGACAACCAAGTGGCC
AGAGCAGATGTTGAAGACTCAGATGGTGCTGGACGCGGTACTGATGAGTG
CCAAGGAGAGGGACGGAGGGTGGGTGGAGATGGAGGGGGGAAAATAAGTT
CTAAACGGCGAGAAGGCGTCGATCCAGCTGAAAGACTTTGTCTTGCCCGT
CCCCGGCCGGTATCTTTCCTTCGATATCAATCGCCAATGCTTTAAACACG
AGGGGCTCGACCAGGTGGTACAACATTCGCTTTACCCTCTGGGCACTCGA
TTGGCTCCTGCCCATCCGCGCCCGTGGGTGTATCCACGCGGCGAATGAGG
AGGGAGTACCTTACGAGTTCTCCGCCGAGTTGATATTTGACTATGGGTGC
TCGGCGACGTTCTTTTGCTCTTTCTTGACGCATGAGACACAGCTTGCGCA
CAACGTCCACCTCATGGACGGGGTCATGTTTGTGCACTCCGCCCGCCTGC
CCCTCCTCCACCACACCCTGCCCTCCCTCGGCGCCCTCAAGAGGATCAAC
ACGGAGTTTTGCTTCAAGGCCGACGACGATTTCTTCAAAAGCAACATTCG
TTGCTCTAGCGCCACAGAGCCTTTGGGATGCCTAGGGGATTTGGGATGAT
GTCCCACCACGATCACGATCACGACAAACCGTATTCCGGCAACCGGCGGC
GCCTTAGCAGCCACCATTCCTCTTCTGCGGATGACAATAAAGCGGGTTGG
GCTATATTGGGCAGCGCTACCATTGCGCACAAGCTGTGGAAAGCCATACG
CATGAGCGGGAATTCACGCGTGGTCTGCGTAGCCTCCCGGGATTTTTGTC
GGGCCCAGGATTTTATAGACGAGTGCCAAGCCCAAGTGCCCTTTCCGGAC
GCACCCGAGGCCGTGGAGGGGTACGCAGCGGCCTTGGCGCGGGACGATGT
GGATGTGGTGTACATCCCTTTGCCTACTGCCCTGCGGAAGGAATGGGTGC
TGAAGGCAGCGGCGTCGGGGAAGCATGTATTGGTGGAAAAGCCGGTAGGC
CTCACGACAGAGGATGTGCAGGAGATGATCCAGGCTTGCATCAAG back to top
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