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Properties
| Property Name | Value |
|---|
| TranscriptId | 577343 |
| Track | FilteredModels2 |
| ProteinId | 577257 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:1025981..1029642 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_415 ID=mRNA_415|Name=jgi.p|Nanoce1779_2|577257|organism=Nannochloropsis oceanica|type=mRNA|length=2885bp
ACAGGAAGCGTTGACCGCTGTAACAAAAAAAGAGAGCCTGTGCCGCCTGC
GCACGCTCCCTTCTCCTTCGCTTTCATTCCTCGCTGTGTCTCCGTGTCAT
CGTCATCATCACACTCTTACTACAAACACCAAGCCCCAAATCCGTGTAAC
ATGACGTCCTCTACCAGCACTGCATCTTTCTCCGCTCCTTCAAGAACGGC
GGCAGCGACGAATCAGGGGTCGGCTGCATCGAGCGCGGGGTCAAGCGAGA
TGCCGTATGCGGCACAAGGGGAACCAGGAACATCGGGCGGAGCGCCCGGG
GATGCGACACAGAAGCAGTTCCAGATGCCGACTTGGAGCCCCGATGGACA
GTTCTTGGCGTTTACGGAGTTGTATTTGAATGCGAATGGAGTAGACACTT
GTTGTTTGGTTGTGTATGACGTGCGGCTCGGGCGGGAAGTGGCACGGAAG
ACGTTACCCAACGCCCCGCATATGATCCAGTTTATGCCTGATTCGGACAC
GATAATTTACCTGCAGAACCAGCACGACAACATCTCGTTGTGTTCCATGG
TGTCGGTCCGTGAGCTCCGGTCAGGCCACGAACAAGAACGCGTGATTGAC
GAGGGGATGCCCCTGTTTTTCGCCACGAGCAAGTATAATTCAGCCCGGTA
CTCCCTGGTGATGAATAATGGGAAGAGGAATGGCCTGTACCGTTATTTGG
GGGATATGACTTTACCTCGCAAGGCCTGGAAGCAGCTGGCGACGCACGAG
CGGAAGTTCAGGTCGCCAGAAGTGGCCAGCACGGGTTTACAGGACAGTGT
GATCTTCGTAATGGACAATTACCTTGTCGCTGCGAGTGTGGACGGGCAGT
ATAGGAAGAACATCTGTCGGGTGCAGGGGTTTTGCACCCTTGCCGTGAGT
CCGAATGGGAAGCATATCGCGGTAATGGAGGAAGACGGTGCCACCGGGTT
CTATCAGATGTCCATCATCTCGGGACGGGATGCGACGAACCCATATGGAG
GCACCGAATACGTGCAGAAGACGTTGCCGATTCAGAATGTGGTGGCCTCG
TTTTATTTCTCGCCCGACAGTCAAAAGCTTTTGTTGATGGTGACCACAAG
CCCAAGCCATGAGTTTAGCGTGACGCGGAACACGATGAATCTGGGGGTTT
CCCTGACGTGCAAGTGGGACGTGTACATGCTTGAGACCGGGGAGGTTCGC
TCTTATGGCATCTTTAACCCGCGTCCTTACCAACTGAAAGCCTTCATCCC
GTTTTTCGACCAGTATCGAAATTCACTTTCACCCTGGTCGCCAGATTCGC
AGGCGTTCTGCTACTGCCAGCGGGAGGGGGCATTCATTCAGCGACTGCAG
AAGACGGCGGTGCCCGAGGGGTTGAAGAAGGAGATGGATAGGATCAGAAG
GGGAAAGCCCGGACTTATTTTCCTACCTGATATCGACGATCAGTCTTCCG
CGTACGCCCTCGGCGCCGATTTAGAGGTGTTAACATGGTCGTGGAATTAA
GAGATGAAGGGATGTAGAGCGATGAGGCTGCTGAGTTCTAGCGTGCTCGG
TGGCGGAGCTTTCATTGAGGAGTAGAGGGATAAGGGTGGGATAGAGGGGA
TATAATGGTTTGAATTTTCGTCCGTCTTGAACATAAGAAAACTGAAGAGA
GGGATATTTAGAGTGCAGGAGAGAGCTAGAGAGAGAGTTTGAGCTAGCAC
TCGAGAGCGATAGAGAGACGGGTGAACCTACAGACGGAGCGTCGTCAGAG
TCATAGCAGTAGAAAAAAGAGTAAGAAATGAGGAGGGGAGAGGGAAGAAA
GGACGTTTGGAAACTAATTGAGTAGCAAGAGAGATTTTAGAGAATTATTG
AGAGATAAAATCCCAGGACGATGCTTTCTCTTTCTGAATTTCCACCATAT
CACCACCAGCACTTACCATCAGCAGCGGCAGCAGGAGCAGCAACATCAAT
AGCAATAGAAGCAAGTTCTTGTTAGTTTCTTGCGTGTGTGTTTGTGTTAA
AATTGGTGCGTAGTGGGACAAAAGATAGAAGGGTGATGGCTTTCAGAGTA
GGTGCGTGTCTCGTTGTGTTCTAGGTGGCGGCTTACACAGAGAGGAGGGA
AGAAGGGACGGAGGATGCGTTTATTACAGACGCTCTCTTTCATTTCGTTT
TCTTTCTGGTGTGTGACTGCTGTTAATTCGTATTTTGCTTGGATCGTGTC
TGGCGTGTTGGATCTCCTTCATTCAGAAGGGGAGACCGCGGCCAGGGAAA
GCACTAGAAGACGACACAAACCATGTATCATAAGGATTACAAAAAAAGGA
GGTGGAGCCAAGGACTAACAAATGTAGATAGGGATGGAGGATGTGGACCA
CGAGTTTAAAAAGAAAAGGGAGCAGGAAAGGAAATATGGGAGAAGAAAAA
GGTGAAAGGCAAAGGCAATGACACCAAGCGTTTGTTTTTATTTTTGTCAA
CGAGAGAGACGGAACCAGGGTTTAAAACATTCCATTCTTGTTGGAGACTT
AATTTCCTTCACTCCAGGGAGGAAAGTATGAGAGAAAGAATGCGGCAGTG
ACAAGTGGTAACGGCAGTAACAGAGCAGGAAATGAATAATCGAACCCCCA
CAAAGACCAGCACGGCGGGTGAGCGACGAATTTGCTTCGAGAAGACAAGA
CACGCATCACGCAGCGTCAAACGATAATCAGGAACGCAAAGGCGGGAACC
ACCGGGGCCGCATGCGGACCAGTAAGACAATGCCGTTTCCTTTTTTCGGA
GTTCTATGGATTTGAGGAAGGGAAAGATAGGATACGCTGCTTTCCTACTC
CCTCCCCATTATCATTGAAAAACTCAGGATGGAAGTGCAAAAAAGGATCA
AAAAGATGATGAAGGAAGAAAAACACTGGACACAA back to topprotein sequence of jgi.p|Nanoce1779_2|577257 >mRNA_415-protein ID=mRNA_415-protein|Name=jgi.p|Nanoce1779_2|577257|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MTSSTSTASFSAPSRTAAATNQGSAASSAGSSEMPYAAQGEPGTSGGAPG
DATQKQFQMPTWSPDGQFLAFTELYLNANGVDTCCLVVYDVRLGREVARK
TLPNAPHMIQFMPDSDTIIYLQNQHDNISLCSMVSVRELRSGHEQERVID
EGMPLFFATSKYNSARYSLVMNNGKRNGLYRYLGDMTLPRKAWKQLATHE
RKFRSPEVASTGLQDSVIFVMDNYLVAASVDGQYRKNICRVQGFCTLAVS
PNGKHIAVMEEDGATGFYQMSIISGRDATNPYGGTEYVQKTLPIQNVVAS
FYFSPDSQKLLLMVTTSPSHEFSVTRNTMNLGVSLTCKWDVYMLETGEVR
SYGIFNPRPYQLKAFIPFFDQYRNSLSPWSPDSQAFCYCQREGAFIQRLQ
KTAVPEGLKKEMDRIRRGKPGLIFLPDIDDQSSAYALGADLEVLTWSWN* back to topmRNA from alignment at scaffold_3:1025981..1029642- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_415 ID=mRNA_415|Name=jgi.p|Nanoce1779_2|577257|organism=Nannochloropsis oceanica|type=mRNA|length=3662bp|location=Sequence derived from alignment at scaffold_3:1025981..1029642- (Nannochloropsis oceanica)
ACAGGAAGCGTTGACCGCTGTAACAAAAAAAGAGAGCCTGTGCCGCCTGC
GCACGCTCCCTTCTCCTTCGCTTTCATTCCTCGCTGTGTCTCCGTGTCAT
CGTCATCATCACACTCTTACTACAAACACCAAGCCCCAAATCCGTGTAAC
ATGACGTCCTCTACCAGCACTGCATCTTTCTCCGCTCCTTCAAGAACGGC
GTCTTTCCTTCTCGCCGCCGCCGCCGCCGCCTGCTGCGCCTCCTCCTCCC
TGGCGTACACCATGATGTCAACGGCCACCTACTCCCGCACCCGGCCCTCT
ATCAACCCGTACAACGCGGGGGGCAGCAGCGTTGACAGTGGCCGTCGCCC
CGGTGGGGTTGAGTACAACCCATTCCGGCCTCAGCCCAAGGGAGGGGTTG
GTGGCTCCCTGCCGCCTCTGCAGCAGGAGCTGCCTGAGCTGACGCCCCTG
CCGAAGCTTGCTTGTTCGATGGACAAGATCGATGAATACAGAGCGGAGGT
AGAGAAGGTGCAGGGGTTGATCCAGGAGGCTTTAAGAGAGGGAGATATGC
CCAAGGCACGAGCATTGTATTATGGCCCGTTGCAGGACGCACTTACCATG
GACCCGCTGTATTCTCTGCAAACCAAGCTGGGCAAAGCAAAAGGGGGAAA
AGAAAAGGCATTTTTAAAGTCTTTGCGCGACCTGATGCAGCGTGGAAACA
CTCGGTTCATGATGGACACGAACCAGATTGCTGTTTTGCATAAGGGAGGC
AATGGGTTGGACCTTGTTGAAGGCCAGCTCAAATATCTGGGCCCTGCAAA
GAAGACAGTGGAGACAAAATGGAAGCCTGAGAGTCTGGCCAGCATGTTGG
AGGAGGTGGCGGAGGAAATTGCGACCCGTCCTCCCCCTGTCCCGAGCACC
AGCACGGGCTTTGGGGGCCGGCAGCGTAAGAATGTGCCGGGAGGGAATGC
TGCTGCTGCTGCGGCGGCGGCGGCGGCGGCAGCGACGAATCAGGGGTCGG
CTGCATCGAGCGCGGGGTCAAGCGAGATGCCGTATGCGGCACAAGGGGAA
CCAGGAACATCGGGCGGAGCGCCCGGGGATGCGACACAGAAGCAGTTCCA
GATGCCGACTTGGAGCCCCGATGGACAGTTCTTGGCGTTTACGGAGTTGT
ATTTGAATGCGAATGGAGTAGACACTTGTTGTTTGGTTGTGTATGACGTG
CGGCTCGGGCGGGAAGTGGCACGGAAGACGTTACCCAACGCCCCGCATAT
GATCCAGTTTATGCCTGATTCGGACACGATAATTTACCTGCAGAACCAGC
ACGACAACATCTCGTTGTGTTCCATGGTGTCGGTCCGTGAGCTCCGGTCA
GGCCACGAACAAGAACGCGTGATTGACGAGGGGATGCCCCTGTTTTTCGC
CACGAGCAAGTATAATTCAGCCCGGTACTCCCTGGTGATGAATAATGGGA
AGAGGAATGGCCTGTACCGTTATTTGGGGGATATGACTTTACCTCGCAAG
GCCTGGAAGCAGCTGGCGACGCACGAGCGGAAGTTCAGGTCGCCAGAAGT
GGCCAGCACGGGTTTACAGGACAGTGTGATCTTCGTAATGGACAATTACC
TTGTCGCTGCGAGTGTGGACGGGCAGTATAGGAAGAACATCTGTCGGGTG
CAGGGGTTTTGCACCCTTGCCGTGAGTCCGAATGGGAAGCATATCGCGGT
AATGGAGGAAGACGGTGCCACCGGGTTCTATCAGATGTCCATCATCTCGG
GACGGGATGCGACGAACCCATATGGAGGCACCGAATACGTGCAGAAGACG
TTGCCGATTCAGAATGTGGTGGCCTCGTTTTATTTCTCGCCCGACAGTCA
AAAGCTTTTGTTGATGGTGACCACAAGCCCAAGCCATGAGTTTAGCGTGA
CGCGGAACACGATGAATCTGGGGGTTTCCCTGACGTGCAAGTGGGACGTG
TACATGCTTGAGACCGGGGAGGTTCGCTCTTATGGCATCTTTAACCCGCG
TCCTTACCAACTGAAAGCCTTCATCCCGTTTTTCGACCAGTATCGAAATT
CACTTTCACCCTGGTCGCCAGATTCGCAGGCGTTCTGCTACTGCCAGCGG
GAGGGGGCATTCATTCAGCGACTGCAGAAGACGGCGGTGCCCGAGGGGTT
GAAGAAGGAGATGGATAGGATCAGAAGGGGAAAGCCCGGACTTATTTTCC
TACCTGATATCGACGATCAGTCTTCCGCGTACGCCCTCGGCGCCGATTTA
GAGGTGTTAACATGGTCGTGGAATTAAGAGATGAAGGGATGTAGAGCGAT
GAGGCTGCTGAGTTCTAGCGTGCTCGGTGGCGGAGCTTTCATTGAGGAGT
AGAGGGATAAGGGTGGGATAGAGGGGATATAATGGTTTGAATTTTCGTCC
GTCTTGAACATAAGAAAACTGAAGAGAGGGATATTTAGAGTGCAGGAGAG
AGCTAGAGAGAGAGTTTGAGCTAGCACTCGAGAGCGATAGAGAGACGGGT
GAACCTACAGACGGAGCGTCGTCAGAGTCATAGCAGTAGAAAAAAGAGTA
AGAAATGAGGAGGGGAGAGGGAAGAAAGGACGTTTGGAAACTAATTGAGT
AGCAAGAGAGATTTTAGAGAATTATTGAGAGATAAAATCCCAGGACGATG
CTTTCTCTTTCTGAATTTCCACCATATCACCACCAGCACTTACCATCAGC
AGCGGCAGCAGGAGCAGCAACATCAATAGCAATAGAAGCAAGTTCTTGTT
AGTTTCTTGCGTGTGTGTTTGTGTTAAAATTGGTGCGTAGTGGGACAAAA
GATAGAAGGGTGATGGCTTTCAGAGTAGGTGCGTGTCTCGTTGTGTTCTA
GGTGGCGGCTTACACAGAGAGGAGGGAAGAAGGGACGGAGGATGCGTTTA
TTACAGACGCTCTCTTTCATTTCGTTTTCTTTCTGGTGTGTGACTGCTGT
TAATTCGTATTTTGCTTGGATCGTGTCTGGCGTGTTGGATCTCCTTCATT
CAGAAGGGGAGACCGCGGCCAGGGAAAGCACTAGAAGACGACACAAACCA
TGTATCATAAGGATTACAAAAAAAGGAGGTGGAGCCAAGGACTAACAAAT
GTAGATAGGGATGGAGGATGTGGACCACGAGTTTAAAAAGAAAAGGGAGC
AGGAAAGGAAATATGGGAGAAGAAAAAGGTGAAAGGCAAAGGCAATGACA
CCAAGCGTTTGTTTTTATTTTTGTCAACGAGAGAGACGGAACCAGGGTTT
AAAACATTCCATTCTTGTTGGAGACTTAATTTCCTTCACTCCAGGGAGGA
AAGTATGAGAGAAAGAATGCGGCAGTGACAAGTGGTAACGGCAGTAACAG
AGCAGGAAATGAATAATCGAACCCCCACAAAGACCAGCACGGCGGGTGAG
CGACGAATTTGCTTCGAGAAGACAAGACACGCATCACGCAGCGTCAAACG
ATAATCAGGAACGCAAAGGCGGGAACCACCGGGGCCGCATGCGGACCAGT
AAGACAATGCCGTTTCCTTTTTTCGGAGTTCTATGGATTTGAGGAAGGGA
AAGATAGGATACGCTGCTTTCCTACTCCCTCCCCATTATCATTGAAAAAC
TCAGGATGGAAGTGCAAAAAAGGATCAAAAAGATGATGAAGGAAGAAAAA
CACTGGACACAA back to topCoding sequence (CDS) from alignment at scaffold_3:1025981..1029642- >mRNA_415 ID=mRNA_415|Name=jgi.p|Nanoce1779_2|577257|organism=Nannochloropsis oceanica|type=CDS|length=2700bp|location=Sequence derived from alignment at scaffold_3:1025981..1029642- (Nannochloropsis oceanica)
CGGCGGCAGCGACGAATCAGGGGTCGGCTGCATCGAGCGCGGGGTCAAGC
GAGATGCCGTATGCGGCACAAGGGGAACCAGGAACATCGGGCGGAGCGCC
CGGGGATGCGACACAGAAGCAGTTCCAGATGCCGACTTGGAGCCCCGATG
GACAGTTCTTGGCGTTTACGGAGTTGTATTTGAATGCGAATGGAGTAGAC
ACTTGTTGTTTGGTTGTGTATGACGTGCGGCTCGGGCGGGAAGTGGCACG
GAAGACGTTACCCAACGCCCCGCATATGATCCAGTTTATGCCTGATTCGG
ACACGATAATTTACCTGCAGAACCAGCACGACAACATCTCGTTGTGTTCC
ATGGTGTCGGTCCGTGAGCTCCGGTCAGGCCACGAACAAGAACGCGTGAT
TGACGAGGGGATGCCCCTGTTTTTCGCCACGAGCAAGTATAATTCAGCCC
GGTACTCCCTGGTGATGAATAATGGGAAGAGGAATGGCCTGTACCGTTAT
TTGGGGGATATGACTTTACCTCGCAAGGCCTGGAAGCAGCTGGCGACGCA
CGAGCGGAAGTTCAGGTCGCCAGAAGTGGCCAGCACGGGTTTACAGGACA
GTGTGATCTTCGTAATGGACAATTACCTTGTCGCTGCGAGTGTGGACGGG
CAGTATAGGAAGAACATCTGTCGGGTGCAGGGGTTTTGCACCCTTGCCGT
GAGTCCGAATGGGAAGCATATCGCGGTAATGGAGGAAGACGGTGCCACCG
GGTTCTATCAGATGTCCATCATCTCGGGACGGGATGCGACGAACCCATAT
GGAGGCACCGAATACGTGCAGAAGACGTTGCCGATTCAGAATGTGGTGGC
CTCGTTTTATTTCTCGCCCGACAGTCAAAAGCTTTTGTTGATGGTGACCA
CAAGCCCAAGCCATGAGTTTAGCGTGACGCGGAACACGATGAATCTGGGG
GTTTCCCTGACGTGCAAGTGGGACGTGTACATGCTTGAGACCGGGGAGGT
TCGCTCTTATGGCATCTTTAACCCGCGTCCTTACCAACTGAAAGCCTTCA
TCCCGTTTTTCGACCAGTATCGAAATTCACTTTCACCCTGGTCGCCAGAT
TCGCAGGCGTTCTGCTACTGCCAGCGGGAGGGGGCATTCATTCAGCGACT
GCAGAAGACGGCGGTGCCCGAGGGGTTGAAGAAGGAGATGGATAGGATCA
GAAGGGGAAAGCCCGGACTTATTTTCCTACCTGATATCGACGATCAGTCT
TCCGCGTACGCCCTCGGCGCCGATTTAGAGGTGTTAACATGGTCGTGGAA
TTAAATGACGTCCTCTACCAGCACTGCATCTTTCTCCGCTCCTTCAAGAA
CGGCGGCAGCGACGAATCAGGGGTCGGCTGCATCGAGCGCGGGGTCAAGC
GAGATGCCGTATGCGGCACAAGGGGAACCAGGAACATCGGGCGGAGCGCC
CGGGGATGCGACACAGAAGCAGTTCCAGATGCCGACTTGGAGCCCCGATG
GACAGTTCTTGGCGTTTACGGAGTTGTATTTGAATGCGAATGGAGTAGAC
ACTTGTTGTTTGGTTGTGTATGACGTGCGGCTCGGGCGGGAAGTGGCACG
GAAGACGTTACCCAACGCCCCGCATATGATCCAGTTTATGCCTGATTCGG
ACACGATAATTTACCTGCAGAACCAGCACGACAACATCTCGTTGTGTTCC
ATGGTGTCGGTCCGTGAGCTCCGGTCAGGCCACGAACAAGAACGCGTGAT
TGACGAGGGGATGCCCCTGTTTTTCGCCACGAGCAAGTATAATTCAGCCC
GGTACTCCCTGGTGATGAATAATGGGAAGAGGAATGGCCTGTACCGTTAT
TTGGGGGATATGACTTTACCTCGCAAGGCCTGGAAGCAGCTGGCGACGCA
CGAGCGGAAGTTCAGGTCGCCAGAAGTGGCCAGCACGGGTTTACAGGACA
GTGTGATCTTCGTAATGGACAATTACCTTGTCGCTGCGAGTGTGGACGGG
CAGTATAGGAAGAACATCTGTCGGGTGCAGGGGTTTTGCACCCTTGCCGT
GAGTCCGAATGGGAAGCATATCGCGGTAATGGAGGAAGACGGTGCCACCG
GGTTCTATCAGATGTCCATCATCTCGGGACGGGATGCGACGAACCCATAT
GGAGGCACCGAATACGTGCAGAAGACGTTGCCGATTCAGAATGTGGTGGC
CTCGTTTTATTTCTCGCCCGACAGTCAAAAGCTTTTGTTGATGGTGACCA
CAAGCCCAAGCCATGAGTTTAGCGTGACGCGGAACACGATGAATCTGGGG
GTTTCCCTGACGTGCAAGTGGGACGTGTACATGCTTGAGACCGGGGAGGT
TCGCTCTTATGGCATCTTTAACCCGCGTCCTTACCAACTGAAAGCCTTCA
TCCCGTTTTTCGACCAGTATCGAAATTCACTTTCACCCTGGTCGCCAGAT
TCGCAGGCGTTCTGCTACTGCCAGCGGGAGGGGGCATTCATTCAGCGACT
GCAGAAGACGGCGGTGCCCGAGGGGTTGAAGAAGGAGATGGATAGGATCA
GAAGGGGAAAGCCCGGACTTATTTTCCTACCTGATATCGACGATCAGTCT
TCCGCGTACGCCCTCGGCGCCGATTTAGAGGTGTTAACATGGTCGTGGAA
TTAAATGACGTCCTCTACCAGCACTGCATCTTTCTCCGCTCCTTCAAGAA back to top
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