jgi.p|Nanoce1779_2|586717, mRNA_4149 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586717
Unique NamemRNA_4149
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1394
Alignment locationscaffold_8:953130..954523 +

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Properties
Property NameValue
TranscriptId586803
TrackFilteredModels2
ProteinId586717
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:953130..954523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586717gene_4149Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586717mRNA_4149-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4149CDS_4149Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4149 ID=mRNA_4149|Name=jgi.p|Nanoce1779_2|586717|organism=Nannochloropsis oceanica|type=mRNA|length=1394bp
GGAAGGGGGGCGATCGGGGGAAGGCTGGCGTTGCCGAAAGATTTGGGGAG
GATGGTCCGAGTGCGGGAGGGGGGAGAAGGGGAAAAGGAGGAGGATTTGG
CGTCGAGTTTGACGCGGAGCTTGGGTGTTCCACCGGCGGTGCCATCCCGT
CCTTCTCCGTTCCCAACGCCGTCTCGGTACTTGTCTTCTCCCACCCCGAA
TTCAGTCGTGCGTGGAGGGAGGGAAGAAGGAGAAGAAGGGGGAGGGGAAG
GTGTCGGAAGGGAGGACGGGGGGATCGCCGGAACTTCACCCTCTGTCTCT
CCACCTCTACCCCTTCCCCTTCTTCTTCAGCAGCAGCAGCAGCAGCAGTC
CTCGCAGCGTCGTGCCGCCCCTCTGCCAGTCATTATAGAATGCGTTCCCA
ACAAGGAACAGAAAGGAGAAAGGGAGGGGGAAAGGGAGAAAGGGAGCAGT
GACAGCGTGGAAGACGAAATTCTATCACTGATAATTCAATTATCTAATTA
CGTCACGCGAAAAGACGCCCAACATCGGTTGATTCGGCTACGGCGAAAAA
GTCGGTACCGGCAAAAATTTGAGTCGTTGCGGTTCTTTTTACGCGTGCAG
GAAGTGATGGGCGTGTATGCGTTTAAGGTTCCAGTGAGACGGTTTTTGAC
TGAGTTGTTTGGGAGTGTGGACCTGTTTTCAACATCTGGATGGGGGGGGT
TAAGGGAGAGAGGGGAGGGGGAGGAGGGAAAGGAGTGATTGGTGATGGGT
GTGTATTTGTTTGAGAAAATAGTGGTAGAGGAGAGGATTAATGATGAAAG
AATGAAGGGGAAGAAAGGAAGAACGGCGGGTGGCAATAGCTATTGCTTTT
ATGTGGTATATGGTTTGATCGTCGGTGCGAGTGTGAACGATAAGGGTATT
CGTGTTCGACTGCGCAGAATTCGTCGGTCTAGTCAATTCGTCTCATATTT
CCTCTCTGTTTCCCTCTCTTTCTCTTTCTCCTTCTCTTTCAATCTCATTC
TCTCCTCTCTACTGTAAATTCACGACCTGGCAGCTACCGTGGTGGAGAGG
CAGATACAATCACATGTCGTGTGTCGGCACCGGTCAAGTAAAGCCCCTTT
CTTCCCTTACCGGCGTTGAGCCCTGATCGACAGACTCCTCGCAGGTGATG
TTTCATCATAATATCAGAGGTCCTCCGCAGACAGGCGAGCACGGGTTGGC
TCCATCTCTCATTTTTTGTCATTTCCACCTCGTTCCAACGGTCCTTACGG
TCCCCATTCCTCCCTTGTACCAATCAATTTATTGATTCTCTCCTTGTAAA
TATTCGTCCTCGCCCGTCTCTCCCTTCCTCCCTCCCTCCCTCCATCCCTG
CTTGCCTTTATTTTCCCCCCTCCATCTCCACCCACCCTCCGTCC
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protein sequence of jgi.p|Nanoce1779_2|586717

>mRNA_4149-protein ID=mRNA_4149-protein|Name=jgi.p|Nanoce1779_2|586717|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MVRVREGGEGEKEEDLASSLTRSLGVPPAVPSRPSPFPTPSRYLSSPTPN
SVVRGGREEGEEGGGEGVGREDGGIAGTSPSVSPPLPLPLLLQQQQQQQS
SQRRAAPLPVIIECVPNKEQKGEREGEREKGSSDSVEDEILSLIIQLSNY
VTRKDAQHRLIRLRRKSRYRQKFESLRFFLRVQEVMGVYAFKVPVRRFLT
ELFGSVDLFSTSGWGGLRERGEGEEGKE*
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mRNA from alignment at scaffold_8:953130..954523+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4149 ID=mRNA_4149|Name=jgi.p|Nanoce1779_2|586717|organism=Nannochloropsis oceanica|type=mRNA|length=1394bp|location=Sequence derived from alignment at scaffold_8:953130..954523+ (Nannochloropsis oceanica)
GGAAGGGGGGCGATCGGGGGAAGGCTGGCGTTGCCGAAAGATTTGGGGAG
GATGGTCCGAGTGCGGGAGGGGGGAGAAGGGGAAAAGGAGGAGGATTTGG
CGTCGAGTTTGACGCGGAGCTTGGGTGTTCCACCGGCGGTGCCATCCCGT
CCTTCTCCGTTCCCAACGCCGTCTCGGTACTTGTCTTCTCCCACCCCGAA
TTCAGTCGTGCGTGGAGGGAGGGAAGAAGGAGAAGAAGGGGGAGGGGAAG
GTGTCGGAAGGGAGGACGGGGGGATCGCCGGAACTTCACCCTCTGTCTCT
CCACCTCTACCCCTTCCCCTTCTTCTTCAGCAGCAGCAGCAGCAGCAGTC
CTCGCAGCGTCGTGCCGCCCCTCTGCCAGTCATTATAGAATGCGTTCCCA
ACAAGGAACAGAAAGGAGAAAGGGAGGGGGAAAGGGAGAAAGGGAGCAGT
GACAGCGTGGAAGACGAAATTCTATCACTGATAATTCAATTATCTAATTA
CGTCACGCGAAAAGACGCCCAACATCGGTTGATTCGGCTACGGCGAAAAA
GTCGGTACCGGCAAAAATTTGAGTCGTTGCGGTTCTTTTTACGCGTGCAG
GAAGTGATGGGCGTGTATGCGTTTAAGGTTCCAGTGAGACGGTTTTTGAC
TGAGTTGTTTGGGAGTGTGGACCTGTTTTCAACATCTGGATGGGGGGGGT
TAAGGGAGAGAGGGGAGGGGGAGGAGGGAAAGGAGTGATTGGTGATGGGT
GTGTATTTGTTTGAGAAAATAGTGGTAGAGGAGAGGATTAATGATGAAAG
AATGAAGGGGAAGAAAGGAAGAACGGCGGGTGGCAATAGCTATTGCTTTT
ATGTGGTATATGGTTTGATCGTCGGTGCGAGTGTGAACGATAAGGGTATT
CGTGTTCGACTGCGCAGAATTCGTCGGTCTAGTCAATTCGTCTCATATTT
CCTCTCTGTTTCCCTCTCTTTCTCTTTCTCCTTCTCTTTCAATCTCATTC
TCTCCTCTCTACTGTAAATTCACGACCTGGCAGCTACCGTGGTGGAGAGG
CAGATACAATCACATGTCGTGTGTCGGCACCGGTCAAGTAAAGCCCCTTT
CTTCCCTTACCGGCGTTGAGCCCTGATCGACAGACTCCTCGCAGGTGATG
TTTCATCATAATATCAGAGGTCCTCCGCAGACAGGCGAGCACGGGTTGGC
TCCATCTCTCATTTTTTGTCATTTCCACCTCGTTCCAACGGTCCTTACGG
TCCCCATTCCTCCCTTGTACCAATCAATTTATTGATTCTCTCCTTGTAAA
TATTCGTCCTCGCCCGTCTCTCCCTTCCTCCCTCCCTCCCTCCATCCCTG
CTTGCCTTTATTTTCCCCCCTCCATCTCCACCCACCCTCCGTCC
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Coding sequence (CDS) from alignment at scaffold_8:953130..954523+

>mRNA_4149 ID=mRNA_4149|Name=jgi.p|Nanoce1779_2|586717|organism=Nannochloropsis oceanica|type=CDS|length=687bp|location=Sequence derived from alignment at scaffold_8:953130..954523+ (Nannochloropsis oceanica)
ATGGTCCGAGTGCGGGAGGGGGGAGAAGGGGAAAAGGAGGAGGATTTGGC
GTCGAGTTTGACGCGGAGCTTGGGTGTTCCACCGGCGGTGCCATCCCGTC
CTTCTCCGTTCCCAACGCCGTCTCGGTACTTGTCTTCTCCCACCCCGAAT
TCAGTCGTGCGTGGAGGGAGGGAAGAAGGAGAAGAAGGGGGAGGGGAAGG
TGTCGGAAGGGAGGACGGGGGGATCGCCGGAACTTCACCCTCTGTCTCTC
CACCTCTACCCCTTCCCCTTCTTCTTCAGCAGCAGCAGCAGCAGCAGTCC
TCGCAGCGTCGTGCCGCCCCTCTGCCAGTCATTATAGAATGCGTTCCCAA
CAAGGAACAGAAAGGAGAAAGGGAGGGGGAAAGGGAGAAAGGGAGCAGTG
ACAGCGTGGAAGACGAAATTCTATCACTGATAATTCAATTATCTAATTAC
GTCACGCGAAAAGACGCCCAACATCGGTTGATTCGGCTACGGCGAAAAAG
TCGGTACCGGCAAAAATTTGAGTCGTTGCGGTTCTTTTTACGCGTGCAGG
AAGTGATGGGCGTGTATGCGTTTAAGGTTCCAGTGAGACGGTTTTTGACT
GAGTTGTTTGGGAGTGTGGACCTGTTTTCAACATCTGGATGGGGGGGGTT
AAGGGAGAGAGGGGAGGGGGAGGAGGGAAAGGAGTGA
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Synonyms
Publications