jgi.p|Nanoce1779_2|586712, mRNA_4147 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586712
Unique Name	mRNA_4147
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2280
Alignment location	scaffold_8:943583..945862 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586798
Track	FilteredModels2
ProteinId	586712

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:943583..945862 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586712	gene_4147	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586712	mRNA_4147-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4147	CDS_4147	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:943583..945862+
coding sequence from alignment at scaffold_8:943583..945862+

mRNA sequence

>mRNA_4147 ID=mRNA_4147|Name=jgi.p|Nanoce1779_2|586712|organism=Nannochloropsis oceanica|type=mRNA|length=2280bp
ACAGGAATCTTGTCAACGACAACCCAACCCGCGCCCAGCGCTACCCTTCA
CCATGTCAAGCTATTCCCGCAACACGTGTTCTGTTGTGTCCCAAGGAGGG
GGCATTAGTGGACTGGCCCATGGCACCGATCGAGGTGGAAATGCGCCCCT
CGTCCCGACGGCCTCTGTCAGCCTTCCGACCGCAACCACGCACTGCCCCC
TTCTAATCCGTCCTGCGCATTCAGGCCGCAAGTCTTTTTCGGAGGTAAGC
TCTGTTTGAGACAATTTAATGGGGAGGTGGGCCCTCTATCAGGCGGGGAA
TCGGTAGCTCGTCTCAAACAGAACGCAACGACGTGTATAGGTGTCTCGGA
GGCTTTCCCAGCAATTGCATATGCCTCTATCCTACTCACATGCATGTATA
GAGCTGCAGTCTTACTGCAAGTAGCCGCTCCTGTCTATTCCTCCTCCCTC
TAGCACAGTTGTCCTTGTGCGGCGCAAGATTCAACGCCGCGGCCTTAAAA
GCCACCCGCCGCCTCTCGTTCGTAATGCGGTCAACCGTGGGGGACTCATT
ATGTTTCACTTTCTCCTCCTTATTCACTCTTCTCACGAATGACCTGGTGG
ATCTGTACGGGCGCTCTTGTCCGTGAAGAGCCCTCGCATGTTGGCGGGCA
ATACGTGCCGCATCAATACGGGCCGCATGGTACATGCTCACACCCTCTTT
CCTTCTCCCTTCCGATCCAGGCCCTCTACCGCGCCCTTCTCCGCCTGGCC
CCCAAGTGCAAAACCCACATCCAAGCCGTCTTTCGCTTCTTCAAGGTTCG
CACAAAGCTCTCGCACCAACAAGTGCAGCAAATCCTTATTTCTGCCTTGG
GTCTCGAGCTGGTACGTGAAGCATGGGCAGAAGCCCGGAAAGAGATTGAT
GGACATGCGGAGATGATGATGGCCGAAACGCCTCATCCCATGGATAGTAG
CAATAGTAGCAGTAGCAGTAGCAGTAGCAGTGGCAGCAGTGGAACCGCAT
CCTCTTTTCCCTCCATTTGTTTTCCCTCTTCTTCTATTTCGTCCTCGCCC
CGTACTCAGTCCGCGCATGCGATAACAATGGCTCAGCAGCAAGAACATCC
GTGCGAGCAACAACGGCAGCATCAGCAACTGCAGCCGAACGCGACGGCCA
CTCACACCCGGCCCCGCCCTTTGAGAAGGGAGGAGGAAGAAGAGCCGGTG
CGGCGTGTGCAATTAAATCCGGTGGTGTCCCGGGAGATGGAGCCTCAAGC
GATGCGTTTCCAGCAAAATACTGTGTCCTGGCATGCCAACGAGTCCCTAT
CTTTCTCTAACACGGCCAGTGCCTCTGCTTCCGCTGCTGAGGAAGAGACG
GGTATCTCCCTCGTCTTAGTCTCCTTGTCCTGCCCTCCGTCCTCTCCCTC
CTTGCACGGGGAGGACCAGTCCCCTCCCCAGGAAAGTACTACAAGCACCA
TTACTGCTGCCACGCGTACAGCAGCTGCAGCGATCTCGCCTGCTTCCTCC
TCCATGGCCCCTCGCTCTACCCCTCATGCCTCCTCCGTCGGCATCTCCGT
CGACCTGGAGGATGAGGACCTACTTCTCCAAGACGCGCCAAACGCCTTCG
TGTGTCCCATTTCCTTGCAGCTGATGACCCGTGCCGTCGTGGCGGGGGAT
GGATATTCCTACCAGAGGGAGGCGCTGGACACCTGGATTCTCCGAAATAG
GCGGGAGCGGAAGCCGCTGCGCTCGCCCATGACAAATGCGCCGATGGCCC
CTTTCTATATCCCATCATTTACCCTCCGGAGCATGGTGAGCGATTATGTT
AATACTGCGAGAGCCAGTCATAGGCGGGAGAAGGGGGGGGCGCATGTGGT
GGAAGACTGAGAGGAGGAGGAGGAAGAGGAAGAGAGGATAGATGCTGGAT
TGTAAGTTAGAAGAGGATTTCTTGTTGATGGAGTGGAGAGCAAATGTCAA
AATAAGGGAGTGACGCCGGAAGGCGAGCGACATGAGATTGTGTATTTATT
GGAGGAGAATAAATGGAAGCAGAAGAAGAATAGAAGAGGTCCGCACGCTT
TGATTTGTAATGTAAATAGTGTGCCTGAGGAGGGCGGGACAGAGGTGCTT
AACATCTCAAACAAAGCGACACAATGAAATCTTTTTAGCTCTTTACGGAC
AATGGAAACACATAGATAAGGTATTAAGGCGTTGGAACGGATTACATATT
TTTTTACAGCCGTAGCACCCCAAAGAAACCCAGGAAATTGTCGATGATGC
AAGAGAGAAAAAAAGAAAATATCAGTGCCG

protein sequence of jgi.p|Nanoce1779_2|586712

>mRNA_4147-protein ID=mRNA_4147-protein|Name=jgi.p|Nanoce1779_2|586712|organism=Nannochloropsis oceanica|type=polypeptide|length=424bp
MTWWICTGALVREEPSHVGGQYVPHQYGPHGTCSHPLSFSLPIQALYRAL
LRLAPKCKTHIQAVFRFFKVRTKLSHQQVQQILISALGLELVREAWAEAR
KEIDGHAEMMMAETPHPMDSSNSSSSSSSSSGSSGTASSFPSICFPSSSI
SSSPRTQSAHAITMAQQQEHPCEQQRQHQQLQPNATATHTRPRPLRREEE
EEPVRRVQLNPVVSREMEPQAMRFQQNTVSWHANESLSFSNTASASASAA
EEETGISLVLVSLSCPPSSPSLHGEDQSPPQESTTSTITAATRTAAAAIS
PASSSMAPRSTPHASSVGISVDLEDEDLLLQDAPNAFVCPISLQLMTRAV
VAGDGYSYQREALDTWILRNRRERKPLRSPMTNAPMAPFYIPSFTLRSMV
SDYVNTARASHRREKGGAHVVED*

mRNA from alignment at scaffold_8:943583..945862+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4147 ID=mRNA_4147|Name=jgi.p|Nanoce1779_2|586712|organism=Nannochloropsis oceanica|type=mRNA|length=2280bp|location=Sequence derived from alignment at scaffold_8:943583..945862+ (Nannochloropsis oceanica)
ACAGGAATCTTGTCAACGACAACCCAACCCGCGCCCAGCGCTACCCTTCA
CCATGTCAAGCTATTCCCGCAACACGTGTTCTGTTGTGTCCCAAGGAGGG
GGCATTAGTGGACTGGCCCATGGCACCGATCGAGGTGGAAATGCGCCCCT
CGTCCCGACGGCCTCTGTCAGCCTTCCGACCGCAACCACGCACTGCCCCC
TTCTAATCCGTCCTGCGCATTCAGGCCGCAAGTCTTTTTCGGAGGTAAGC
TCTGTTTGAGACAATTTAATGGGGAGGTGGGCCCTCTATCAGGCGGGGAA
TCGGTAGCTCGTCTCAAACAGAACGCAACGACGTGTATAGGTGTCTCGGA
GGCTTTCCCAGCAATTGCATATGCCTCTATCCTACTCACATGCATGTATA
GAGCTGCAGTCTTACTGCAAGTAGCCGCTCCTGTCTATTCCTCCTCCCTC
TAGCACAGTTGTCCTTGTGCGGCGCAAGATTCAACGCCGCGGCCTTAAAA
GCCACCCGCCGCCTCTCGTTCGTAATGCGGTCAACCGTGGGGGACTCATT
ATGTTTCACTTTCTCCTCCTTATTCACTCTTCTCACGAATGACCTGGTGG
ATCTGTACGGGCGCTCTTGTCCGTGAAGAGCCCTCGCATGTTGGCGGGCA
ATACGTGCCGCATCAATACGGGCCGCATGGTACATGCTCACACCCTCTTT
CCTTCTCCCTTCCGATCCAGGCCCTCTACCGCGCCCTTCTCCGCCTGGCC
CCCAAGTGCAAAACCCACATCCAAGCCGTCTTTCGCTTCTTCAAGGTTCG
CACAAAGCTCTCGCACCAACAAGTGCAGCAAATCCTTATTTCTGCCTTGG
GTCTCGAGCTGGTACGTGAAGCATGGGCAGAAGCCCGGAAAGAGATTGAT
GGACATGCGGAGATGATGATGGCCGAAACGCCTCATCCCATGGATAGTAG
CAATAGTAGCAGTAGCAGTAGCAGTAGCAGTGGCAGCAGTGGAACCGCAT
CCTCTTTTCCCTCCATTTGTTTTCCCTCTTCTTCTATTTCGTCCTCGCCC
CGTACTCAGTCCGCGCATGCGATAACAATGGCTCAGCAGCAAGAACATCC
GTGCGAGCAACAACGGCAGCATCAGCAACTGCAGCCGAACGCGACGGCCA
CTCACACCCGGCCCCGCCCTTTGAGAAGGGAGGAGGAAGAAGAGCCGGTG
CGGCGTGTGCAATTAAATCCGGTGGTGTCCCGGGAGATGGAGCCTCAAGC
GATGCGTTTCCAGCAAAATACTGTGTCCTGGCATGCCAACGAGTCCCTAT
CTTTCTCTAACACGGCCAGTGCCTCTGCTTCCGCTGCTGAGGAAGAGACG
GGTATCTCCCTCGTCTTAGTCTCCTTGTCCTGCCCTCCGTCCTCTCCCTC
CTTGCACGGGGAGGACCAGTCCCCTCCCCAGGAAAGTACTACAAGCACCA
TTACTGCTGCCACGCGTACAGCAGCTGCAGCGATCTCGCCTGCTTCCTCC
TCCATGGCCCCTCGCTCTACCCCTCATGCCTCCTCCGTCGGCATCTCCGT
CGACCTGGAGGATGAGGACCTACTTCTCCAAGACGCGCCAAACGCCTTCG
TGTGTCCCATTTCCTTGCAGCTGATGACCCGTGCCGTCGTGGCGGGGGAT
GGATATTCCTACCAGAGGGAGGCGCTGGACACCTGGATTCTCCGAAATAG
GCGGGAGCGGAAGCCGCTGCGCTCGCCCATGACAAATGCGCCGATGGCCC
CTTTCTATATCCCATCATTTACCCTCCGGAGCATGGTGAGCGATTATGTT
AATACTGCGAGAGCCAGTCATAGGCGGGAGAAGGGGGGGGCGCATGTGGT
GGAAGACTGAGAGGAGGAGGAGGAAGAGGAAGAGAGGATAGATGCTGGAT
TGTAAGTTAGAAGAGGATTTCTTGTTGATGGAGTGGAGAGCAAATGTCAA
AATAAGGGAGTGACGCCGGAAGGCGAGCGACATGAGATTGTGTATTTATT
GGAGGAGAATAAATGGAAGCAGAAGAAGAATAGAAGAGGTCCGCACGCTT
TGATTTGTAATGTAAATAGTGTGCCTGAGGAGGGCGGGACAGAGGTGCTT
AACATCTCAAACAAAGCGACACAATGAAATCTTTTTAGCTCTTTACGGAC
AATGGAAACACATAGATAAGGTATTAAGGCGTTGGAACGGATTACATATT
TTTTTACAGCCGTAGCACCCCAAAGAAACCCAGGAAATTGTCGATGATGC
AAGAGAGAAAAAAAGAAAATATCAGTGCCG

Coding sequence (CDS) from alignment at scaffold_8:943583..945862+

>mRNA_4147 ID=mRNA_4147|Name=jgi.p|Nanoce1779_2|586712|organism=Nannochloropsis oceanica|type=CDS|length=1272bp|location=Sequence derived from alignment at scaffold_8:943583..945862+ (Nannochloropsis oceanica)
ATGACCTGGTGGATCTGTACGGGCGCTCTTGTCCGTGAAGAGCCCTCGCA
TGTTGGCGGGCAATACGTGCCGCATCAATACGGGCCGCATGGTACATGCT
CACACCCTCTTTCCTTCTCCCTTCCGATCCAGGCCCTCTACCGCGCCCTT
CTCCGCCTGGCCCCCAAGTGCAAAACCCACATCCAAGCCGTCTTTCGCTT
CTTCAAGGTTCGCACAAAGCTCTCGCACCAACAAGTGCAGCAAATCCTTA
TTTCTGCCTTGGGTCTCGAGCTGGTACGTGAAGCATGGGCAGAAGCCCGG
AAAGAGATTGATGGACATGCGGAGATGATGATGGCCGAAACGCCTCATCC
CATGGATAGTAGCAATAGTAGCAGTAGCAGTAGCAGTAGCAGTGGCAGCA
GTGGAACCGCATCCTCTTTTCCCTCCATTTGTTTTCCCTCTTCTTCTATT
TCGTCCTCGCCCCGTACTCAGTCCGCGCATGCGATAACAATGGCTCAGCA
GCAAGAACATCCGTGCGAGCAACAACGGCAGCATCAGCAACTGCAGCCGA
ACGCGACGGCCACTCACACCCGGCCCCGCCCTTTGAGAAGGGAGGAGGAA
GAAGAGCCGGTGCGGCGTGTGCAATTAAATCCGGTGGTGTCCCGGGAGAT
GGAGCCTCAAGCGATGCGTTTCCAGCAAAATACTGTGTCCTGGCATGCCA
ACGAGTCCCTATCTTTCTCTAACACGGCCAGTGCCTCTGCTTCCGCTGCT
GAGGAAGAGACGGGTATCTCCCTCGTCTTAGTCTCCTTGTCCTGCCCTCC
GTCCTCTCCCTCCTTGCACGGGGAGGACCAGTCCCCTCCCCAGGAAAGTA
CTACAAGCACCATTACTGCTGCCACGCGTACAGCAGCTGCAGCGATCTCG
CCTGCTTCCTCCTCCATGGCCCCTCGCTCTACCCCTCATGCCTCCTCCGT
CGGCATCTCCGTCGACCTGGAGGATGAGGACCTACTTCTCCAAGACGCGC
CAAACGCCTTCGTGTGTCCCATTTCCTTGCAGCTGATGACCCGTGCCGTC
GTGGCGGGGGATGGATATTCCTACCAGAGGGAGGCGCTGGACACCTGGAT
TCTCCGAAATAGGCGGGAGCGGAAGCCGCTGCGCTCGCCCATGACAAATG
CGCCGATGGCCCCTTTCTATATCCCATCATTTACCCTCCGGAGCATGGTG
AGCGATTATGTTAATACTGCGAGAGCCAGTCATAGGCGGGAGAAGGGGGG
GGCGCATGTGGTGGAAGACTGA

Synonyms

Publications