jgi.p|Nanoce1779_2|586698, mRNA_4144 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586698
Unique NamemRNA_4144
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length665
Alignment locationscaffold_8:937049..937829 -

Link to JBrowse

Properties
Property NameValue
TranscriptId586784
TrackFilteredModels2
ProteinId586698
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:937049..937829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586698gene_4144Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586698mRNA_4144-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4144CDS_4144Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4144 ID=mRNA_4144|Name=jgi.p|Nanoce1779_2|586698|organism=Nannochloropsis oceanica|type=mRNA|length=665bp
TCTCCGATTCTCACACACGGGGCGTATTCAACTGCATGCCATGGCAGCAA
CTTGAGTCCTATTGTATCGTCATTTGAAAAGGCACGCCGACTCTTATCCA
ATAAAGCATGCTCATACATTCACCAAATCACATAGAAGGCACGCTCCTAC
CTCTTACCTACCCACATGACCATCGGGCTCTTATGTACCACCCTAAACGT
TCGCTCCGTGGCAACGAACTGGACAGAAGCAGACAAGGAGGAGTTCCTCA
CTCAAGTTAAGAAGAATGGCTTGGATGACCTTGAGGCCCTCGCGGATGAT
ATAGGGACGAAGTCCGAGCAGGAGCTTGACTTCTTCCTTTCCTTGCTTCA
CGAACACCTTGGTAGGCAATATCTCCAAGCCTTCGCGAACGCGCAACTTG
CCCATGAACCAAGGGCGAAGCGGAACAAAATCATGGCAAAGGTTTTAGAG
ACGGTGATGAACGGGACTTTCGAAGGCCACATGCGCAGAATTTTGACGTA
TGCCACATCAACCGACTCGGATATGCTGTTTACCAAAGACGCAGCGGGAA
CAGGAGGAGCGGAAGCAGGAAAGATGGGGGGCGTTGGGCGGCGTCAGGTG
ACAGCGCCGGCTCCCAAGAAGGGTTATACGAAGAGGAAGATGAAGGAAGA
GACGAAGAAGAAAAA
back to top

protein sequence of jgi.p|Nanoce1779_2|586698

>mRNA_4144-protein ID=mRNA_4144-protein|Name=jgi.p|Nanoce1779_2|586698|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MTIGLLCTTLNVRSVATNWTEADKEEFLTQVKKNGLDDLEALADDIGTKS
EQELDFFLSLLHEHLGRQYLQAFANAQLAHEPRAKRNKIMAKVLETVMNG
TFEGHMRRILTYATSTDSDMLFTKDAAGTGGAEAGKMGGVGRRQVTAPAP
KKGYTKRKMKEETKKK
back to top

mRNA from alignment at scaffold_8:937049..937829-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4144 ID=mRNA_4144|Name=jgi.p|Nanoce1779_2|586698|organism=Nannochloropsis oceanica|type=mRNA|length=781bp|location=Sequence derived from alignment at scaffold_8:937049..937829- (Nannochloropsis oceanica)
TCTCCGATTCTCACACACGGGGCGTATTCAACTGCATGCCATGGCAGCAA
CTTGAGTCCTATTGTATCGTCATTTGAAAAGGCACGCCGACTCTTATCCA
ATAAAGCATGCTCATACATTCACCAAATCACATAGAAGGCACGCTCCTAC
CTCTTACCTACCCACATGACCATCGGGCTCTTATGTACCACCCTAAACGT
TCGCTCCGTGGCAACGAACTGGTAAGTGATGAACGATATTCATATAACGC
GCTCACACTCTTGTCAAATGCGCTTTCGAGCCGAGGTACACGCACGCAAC
TCTCATCTCATTAACAAATCCCTTATATTTCTAATAGGACAGAAGCAGAC
AAGGAGGAGTTCCTCACTCAAGTTAAGAAGAATGGCTTGGATGACCTTGA
GGCCCTCGCGGATGATATAGGGACGAAGTCCGAGCAGGAGCTTGACTTCT
TCCTTTCCTTGCTTCACGAACACCTTGGTAGGCAATATCTCCAAGCCTTC
GCGAACGCGCAACTTGCCCATGAACCAAGGGCGAAGCGGAACAAAATCAT
GGCAAAGGTTTTAGAGACGGTGATGAACGGGACTTTCGAAGGCCACATGC
GCAGAATTTTGACGTATGCCACATCAACCGACTCGGATATGCTGTTTACC
AAAGACGCAGCGGGAACAGGAGGAGCGGAAGCAGGAAAGATGGGGGGCGT
TGGGCGGCGTCAGGTGACAGCGCCGGCTCCCAAGAAGGGTTATACGAAGA
GGAAGATGAAGGAAGAGACGAAGAAGAAAAA
back to top

Coding sequence (CDS) from alignment at scaffold_8:937049..937829-

>mRNA_4144 ID=mRNA_4144|Name=jgi.p|Nanoce1779_2|586698|organism=Nannochloropsis oceanica|type=CDS|length=1000bp|location=Sequence derived from alignment at scaffold_8:937049..937829- (Nannochloropsis oceanica)
GACAGAAGCAGACAAGGAGGAGTTCCTCACTCAAGTTAAGAAGAATGGCT
TGGATGACCTTGAGGCCCTCGCGGATGATATAGGGACGAAGTCCGAGCAG
GAGCTTGACTTCTTCCTTTCCTTGCTTCACGAACACCTTGGTAGGCAATA
TCTCCAAGCCTTCGCGAACGCGCAACTTGCCCATGAACCAAGGGCGAAGC
GGAACAAAATCATGGCAAAGGTTTTAGAGACGGTGATGAACGGGACTTTC
GAAGGCCACATGCGCAGAATTTTGACGTATGCCACATCAACCGACTCGGA
TATGCTGTTTACCAAAGACGCAGCGGGAACAGGAGGAGCGGAAGCAGGAA
AGATGGGGGGCGTTGGGCGGCGTCAGGTGACAGCGCCGGCTCCCAAGAAG
GGTTATACGAAGAGGAAGATGAAGGAAGAGACGAAGAAGAAAAAATGACC
ATCGGGCTCTTATGTACCACCCTAAACGTTCGCTCCGTGGCAACGAACTG
GACAGAAGCAGACAAGGAGGAGTTCCTCACTCAAGTTAAGAAGAATGGCT
TGGATGACCTTGAGGCCCTCGCGGATGATATAGGGACGAAGTCCGAGCAG
GAGCTTGACTTCTTCCTTTCCTTGCTTCACGAACACCTTGGTAGGCAATA
TCTCCAAGCCTTCGCGAACGCGCAACTTGCCCATGAACCAAGGGCGAAGC
GGAACAAAATCATGGCAAAGGTTTTAGAGACGGTGATGAACGGGACTTTC
GAAGGCCACATGCGCAGAATTTTGACGTATGCCACATCAACCGACTCGGA
TATGCTGTTTACCAAAGACGCAGCGGGAACAGGAGGAGCGGAAGCAGGAA
AGATGGGGGGCGTTGGGCGGCGTCAGGTGACAGCGCCGGCTCCCAAGAAG
GGTTATACGAAGAGGAAGATGAAGGAAGAGACGAAGAAGAAAAAATGACC
ATCGGGCTCTTATGTACCACCCTAAACGTTCGCTCCGTGGCAACGAACTG
back to top
Synonyms
Publications