jgi.p|Nanoce1779_2|577255, mRNA_414 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577255
Unique NamemRNA_414
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length536
Alignment locationscaffold_3:1025478..1026013 +

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Properties
Property NameValue
TranscriptId577341
TrackFilteredModels2
ProteinId577255
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1025478..1026013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577255gene_414Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577255mRNA_414-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_414CDS_414Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_414 ID=mRNA_414|Name=jgi.p|Nanoce1779_2|577255|organism=Nannochloropsis oceanica|type=mRNA|length=536bp
AGCCATGCTCACAATGACAACACCAACAACGACAACATTTCAAACCCTCC
ACGGTGGTTGCCACTGCGGGCGGGTCCGCTTTTCCTGCACTGTCGAAACA
TCCACTCCCCTCGTGGAGTGTAACTGCAGCCGCTGTAGCCAGTTTGGATT
CCTCCACCTCATAGTCCCGGCTGCTGCTGATTTTTGCCTTGCCCCGGGAT
CACAAGAACACCTTATGGAATATAGGTTTAACACCCAAAAAGCCAAGCAC
TTGTTTTGTAAACTCTGTGGAGTGCAATCATTTTATCATCCTCGTTCTCA
TCCGGAGGGAATCAGTGTGAACGCACGGTGTCTGGATGGAGAGGTGTCCT
TGCAGAGGGCCGTGAAGGCTTTCAATGGACGACAGTGGGAGGCGCATGTT
GCTGAGATAATGAAGTAGTTTCTCTTTCGAAGGAATTAATGAGTCCAATA
TCCCCCTCCCAAAAACAAAAAAGTATTAGTTGTAGATACTTGTAGATATA
AAGTTGTGTCCAGTGTTTTTCTTCCTTCATCATCTT
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protein sequence of jgi.p|Nanoce1779_2|577255

>mRNA_414-protein ID=mRNA_414-protein|Name=jgi.p|Nanoce1779_2|577255|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MLTMTTPTTTTFQTLHGGCHCGRVRFSCTVETSTPLVECNCSRCSQFGFL
HLIVPAAADFCLAPGSQEHLMEYRFNTQKAKHLFCKLCGVQSFYHPRSHP
EGISVNARCLDGEVSLQRAVKAFNGRQWEAHVAEIMK*
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mRNA from alignment at scaffold_3:1025478..1026013+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_414 ID=mRNA_414|Name=jgi.p|Nanoce1779_2|577255|organism=Nannochloropsis oceanica|type=mRNA|length=536bp|location=Sequence derived from alignment at scaffold_3:1025478..1026013+ (Nannochloropsis oceanica)
AGCCATGCTCACAATGACAACACCAACAACGACAACATTTCAAACCCTCC
ACGGTGGTTGCCACTGCGGGCGGGTCCGCTTTTCCTGCACTGTCGAAACA
TCCACTCCCCTCGTGGAGTGTAACTGCAGCCGCTGTAGCCAGTTTGGATT
CCTCCACCTCATAGTCCCGGCTGCTGCTGATTTTTGCCTTGCCCCGGGAT
CACAAGAACACCTTATGGAATATAGGTTTAACACCCAAAAAGCCAAGCAC
TTGTTTTGTAAACTCTGTGGAGTGCAATCATTTTATCATCCTCGTTCTCA
TCCGGAGGGAATCAGTGTGAACGCACGGTGTCTGGATGGAGAGGTGTCCT
TGCAGAGGGCCGTGAAGGCTTTCAATGGACGACAGTGGGAGGCGCATGTT
GCTGAGATAATGAAGTAGTTTCTCTTTCGAAGGAATTAATGAGTCCAATA
TCCCCCTCCCAAAAACAAAAAAGTATTAGTTGTAGATACTTGTAGATATA
AAGTTGTGTCCAGTGTTTTTCTTCCTTCATCATCTT
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Coding sequence (CDS) from alignment at scaffold_3:1025478..1026013+

>mRNA_414 ID=mRNA_414|Name=jgi.p|Nanoce1779_2|577255|organism=Nannochloropsis oceanica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_3:1025478..1026013+ (Nannochloropsis oceanica)
ATGCTCACAATGACAACACCAACAACGACAACATTTCAAACCCTCCACGG
TGGTTGCCACTGCGGGCGGGTCCGCTTTTCCTGCACTGTCGAAACATCCA
CTCCCCTCGTGGAGTGTAACTGCAGCCGCTGTAGCCAGTTTGGATTCCTC
CACCTCATAGTCCCGGCTGCTGCTGATTTTTGCCTTGCCCCGGGATCACA
AGAACACCTTATGGAATATAGGTTTAACACCCAAAAAGCCAAGCACTTGT
TTTGTAAACTCTGTGGAGTGCAATCATTTTATCATCCTCGTTCTCATCCG
GAGGGAATCAGTGTGAACGCACGGTGTCTGGATGGAGAGGTGTCCTTGCA
GAGGGCCGTGAAGGCTTTCAATGGACGACAGTGGGAGGCGCATGTTGCTG
AGATAATGAAGTAG
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Synonyms
Publications