jgi.p|Nanoce1779_2|586678, mRNA_4139 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586678
Unique NamemRNA_4139
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1625
Alignment locationscaffold_8:920658..922282 -

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Properties
Property NameValue
TranscriptId586764
TrackFilteredModels2
ProteinId586678
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:920658..922282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586678gene_4139Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586678mRNA_4139-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4139CDS_4139Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4139 ID=mRNA_4139|Name=jgi.p|Nanoce1779_2|586678|organism=Nannochloropsis oceanica|type=mRNA|length=1625bp
ACAGAAGAACGACGGCCAAGTAACCATCGTGGTGAATGCCGGTCCTCCTT
CCTCCCGAGCCTGTACCTCATATCTCTAGTGAGGACAGATACGCGGCCCT
CCCTTTCCTGACTGATGAAGACATCCTCCCTCTTCTACGCTCCGCTTTCA
AAGCCAAGCGAGGCTCTGGCACCTCGCAGACCACGGATTTTGGGCAGATT
TTCACCGATCTTTTAACGAGACGACAGCCAGCTCTGCTCGAGCGCACGCG
GCGATTTGCCAATCATGCGGCCTCTAATACTATTGCTGCTCACTTGCCTG
GTTTATCCCCTACTTCCCAGGGAGGGAGGGAAGGAGGGAAAGTGGGCAGA
ATGGTCAGACCTCACGACAACTGGAAACGCTTTCTGTACGTTATGCAGCA
TGAGTGGGCGGTTGTAGCGCCGGGCGAGGGGATTGATTACATCGCGAGCG
ACGAGGCAACGACGTGTCATTTGGTTGGCATAAGAGAGCGTGGTGGGACT
GGCGTGGTAGGCCTGGCGCATGTCGATTCCCCCGAGACGGTCGCTGATTT
GTGTGCAATGGAAACAGCCGTGGAAGACAAAGTTCGAGCTTTAAGAGGTG
ATGATAGCGCCGCCGGCGACACACCCTTGGACTTGGACATCTTCATCGTG
GGAGGGTACGATGGGGACAGCGAGGCGGGCCTCTTAACGGCGGTTGTCCT
GCGTCACTTCGCATCGGAGTCTCCAAGGACGTATAACTTGCAGCTTGCCC
TTGTTTCATCGCTGAATACACGCGTGCAGCCATTGTCCCCTGCCCTCTCG
TCGGCGAGTGCCTTTGCTGCTGCGCCCACTTGTCGCTCTCTGGGATTTGT
CCTCGCCTCCGCCGGCGAGAGAGGGGAAAGAAGGGATGAAAGAGGGACTC
TCGATCCCTCTAAAGCATGTATTGGAGTATTTACGGGTGATATCCCAAAA
AACCTGCGTGGCCCCAGGCACACCTTACGTGCACTCCGTCTGTGGGGATG
GGGCAGTAGGAGCCTCACGCACGTCCAAGTCAAGCATAAAAAACATATGA
AGAGGAGAATAGAAGCAGAGCTATCCACACCCCAACATTATAATCTCCGT
ATTGCCAAAGCTTCCAACGATATCTCTAAAGAGCACTCCTCTTCCTCCTC
GTCGTCCTTCTCTTCTTCCTTTTCCTCCTCTTCGACATCAGTAGCTGCAG
CAGCAGTAGTCGGAGAGGGAGAAGGAGGAGACGAAGTTTTCATTTCCATC
GCCCCCTTCCGCTTTAAACGCTCCAAAAACATCCACGCCCTCTCCCTTCT
CTCCGACGACGATCTGGTCCAAGAAACGTCCACCAGCCCTGCCATCGAGC
GTCCCTCGTTTGTGCAGGACATACGGAGAGTCTTATCCCTCCTCTCAACT
GCAACGCCAGAGGATTTTTTTGGGCCGTCAGGGATGCAGGCATTGACAGT
GCCCTTGCCGCGTGTGGATTTAGTCAAAGTTGTAAGGGAGGGGGAGGAGA
GAGAGGATGAGGAGGGGAGAGAGAAAAGGCGGGCTTTGCCATGATTGGTT
TGGAAGCCATGTACAAGGAGTCATAGATCAGAAAGTGGTGTCAACACTCA
AATGAAAATAATTTACAAGCGTCAC
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protein sequence of jgi.p|Nanoce1779_2|586678

>mRNA_4139-protein ID=mRNA_4139-protein|Name=jgi.p|Nanoce1779_2|586678|organism=Nannochloropsis oceanica|type=polypeptide|length=503bp
MPVLLPPEPVPHISSEDRYAALPFLTDEDILPLLRSAFKAKRGSGTSQTT
DFGQIFTDLLTRRQPALLERTRRFANHAASNTIAAHLPGLSPTSQGGREG
GKVGRMVRPHDNWKRFLYVMQHEWAVVAPGEGIDYIASDEATTCHLVGIR
ERGGTGVVGLAHVDSPETVADLCAMETAVEDKVRALRGDDSAAGDTPLDL
DIFIVGGYDGDSEAGLLTAVVLRHFASESPRTYNLQLALVSSLNTRVQPL
SPALSSASAFAAAPTCRSLGFVLASAGERGERRDERGTLDPSKACIGVFT
GDIPKNLRGPRHTLRALRLWGWGSRSLTHVQVKHKKHMKRRIEAELSTPQ
HYNLRIAKASNDISKEHSSSSSSSFSSSFSSSSTSVAAAAVVGEGEGGDE
VFISIAPFRFKRSKNIHALSLLSDDDLVQETSTSPAIERPSFVQDIRRVL
SLLSTATPEDFFGPSGMQALTVPLPRVDLVKVVREGEEREDEEGREKRRA
LP*
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mRNA from alignment at scaffold_8:920658..922282-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4139 ID=mRNA_4139|Name=jgi.p|Nanoce1779_2|586678|organism=Nannochloropsis oceanica|type=mRNA|length=1625bp|location=Sequence derived from alignment at scaffold_8:920658..922282- (Nannochloropsis oceanica)
ACAGAAGAACGACGGCCAAGTAACCATCGTGGTGAATGCCGGTCCTCCTT
CCTCCCGAGCCTGTACCTCATATCTCTAGTGAGGACAGATACGCGGCCCT
CCCTTTCCTGACTGATGAAGACATCCTCCCTCTTCTACGCTCCGCTTTCA
AAGCCAAGCGAGGCTCTGGCACCTCGCAGACCACGGATTTTGGGCAGATT
TTCACCGATCTTTTAACGAGACGACAGCCAGCTCTGCTCGAGCGCACGCG
GCGATTTGCCAATCATGCGGCCTCTAATACTATTGCTGCTCACTTGCCTG
GTTTATCCCCTACTTCCCAGGGAGGGAGGGAAGGAGGGAAAGTGGGCAGA
ATGGTCAGACCTCACGACAACTGGAAACGCTTTCTGTACGTTATGCAGCA
TGAGTGGGCGGTTGTAGCGCCGGGCGAGGGGATTGATTACATCGCGAGCG
ACGAGGCAACGACGTGTCATTTGGTTGGCATAAGAGAGCGTGGTGGGACT
GGCGTGGTAGGCCTGGCGCATGTCGATTCCCCCGAGACGGTCGCTGATTT
GTGTGCAATGGAAACAGCCGTGGAAGACAAAGTTCGAGCTTTAAGAGGTG
ATGATAGCGCCGCCGGCGACACACCCTTGGACTTGGACATCTTCATCGTG
GGAGGGTACGATGGGGACAGCGAGGCGGGCCTCTTAACGGCGGTTGTCCT
GCGTCACTTCGCATCGGAGTCTCCAAGGACGTATAACTTGCAGCTTGCCC
TTGTTTCATCGCTGAATACACGCGTGCAGCCATTGTCCCCTGCCCTCTCG
TCGGCGAGTGCCTTTGCTGCTGCGCCCACTTGTCGCTCTCTGGGATTTGT
CCTCGCCTCCGCCGGCGAGAGAGGGGAAAGAAGGGATGAAAGAGGGACTC
TCGATCCCTCTAAAGCATGTATTGGAGTATTTACGGGTGATATCCCAAAA
AACCTGCGTGGCCCCAGGCACACCTTACGTGCACTCCGTCTGTGGGGATG
GGGCAGTAGGAGCCTCACGCACGTCCAAGTCAAGCATAAAAAACATATGA
AGAGGAGAATAGAAGCAGAGCTATCCACACCCCAACATTATAATCTCCGT
ATTGCCAAAGCTTCCAACGATATCTCTAAAGAGCACTCCTCTTCCTCCTC
GTCGTCCTTCTCTTCTTCCTTTTCCTCCTCTTCGACATCAGTAGCTGCAG
CAGCAGTAGTCGGAGAGGGAGAAGGAGGAGACGAAGTTTTCATTTCCATC
GCCCCCTTCCGCTTTAAACGCTCCAAAAACATCCACGCCCTCTCCCTTCT
CTCCGACGACGATCTGGTCCAAGAAACGTCCACCAGCCCTGCCATCGAGC
GTCCCTCGTTTGTGCAGGACATACGGAGAGTCTTATCCCTCCTCTCAACT
GCAACGCCAGAGGATTTTTTTGGGCCGTCAGGGATGCAGGCATTGACAGT
GCCCTTGCCGCGTGTGGATTTAGTCAAAGTTGTAAGGGAGGGGGAGGAGA
GAGAGGATGAGGAGGGGAGAGAGAAAAGGCGGGCTTTGCCATGATTGGTT
TGGAAGCCATGTACAAGGAGTCATAGATCAGAAAGTGGTGTCAACACTCA
AATGAAAATAATTTACAAGCGTCAC
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Coding sequence (CDS) from alignment at scaffold_8:920658..922282-

>mRNA_4139 ID=mRNA_4139|Name=jgi.p|Nanoce1779_2|586678|organism=Nannochloropsis oceanica|type=CDS|length=1509bp|location=Sequence derived from alignment at scaffold_8:920658..922282- (Nannochloropsis oceanica)
ATGCCGGTCCTCCTTCCTCCCGAGCCTGTACCTCATATCTCTAGTGAGGA
CAGATACGCGGCCCTCCCTTTCCTGACTGATGAAGACATCCTCCCTCTTC
TACGCTCCGCTTTCAAAGCCAAGCGAGGCTCTGGCACCTCGCAGACCACG
GATTTTGGGCAGATTTTCACCGATCTTTTAACGAGACGACAGCCAGCTCT
GCTCGAGCGCACGCGGCGATTTGCCAATCATGCGGCCTCTAATACTATTG
CTGCTCACTTGCCTGGTTTATCCCCTACTTCCCAGGGAGGGAGGGAAGGA
GGGAAAGTGGGCAGAATGGTCAGACCTCACGACAACTGGAAACGCTTTCT
GTACGTTATGCAGCATGAGTGGGCGGTTGTAGCGCCGGGCGAGGGGATTG
ATTACATCGCGAGCGACGAGGCAACGACGTGTCATTTGGTTGGCATAAGA
GAGCGTGGTGGGACTGGCGTGGTAGGCCTGGCGCATGTCGATTCCCCCGA
GACGGTCGCTGATTTGTGTGCAATGGAAACAGCCGTGGAAGACAAAGTTC
GAGCTTTAAGAGGTGATGATAGCGCCGCCGGCGACACACCCTTGGACTTG
GACATCTTCATCGTGGGAGGGTACGATGGGGACAGCGAGGCGGGCCTCTT
AACGGCGGTTGTCCTGCGTCACTTCGCATCGGAGTCTCCAAGGACGTATA
ACTTGCAGCTTGCCCTTGTTTCATCGCTGAATACACGCGTGCAGCCATTG
TCCCCTGCCCTCTCGTCGGCGAGTGCCTTTGCTGCTGCGCCCACTTGTCG
CTCTCTGGGATTTGTCCTCGCCTCCGCCGGCGAGAGAGGGGAAAGAAGGG
ATGAAAGAGGGACTCTCGATCCCTCTAAAGCATGTATTGGAGTATTTACG
GGTGATATCCCAAAAAACCTGCGTGGCCCCAGGCACACCTTACGTGCACT
CCGTCTGTGGGGATGGGGCAGTAGGAGCCTCACGCACGTCCAAGTCAAGC
ATAAAAAACATATGAAGAGGAGAATAGAAGCAGAGCTATCCACACCCCAA
CATTATAATCTCCGTATTGCCAAAGCTTCCAACGATATCTCTAAAGAGCA
CTCCTCTTCCTCCTCGTCGTCCTTCTCTTCTTCCTTTTCCTCCTCTTCGA
CATCAGTAGCTGCAGCAGCAGTAGTCGGAGAGGGAGAAGGAGGAGACGAA
GTTTTCATTTCCATCGCCCCCTTCCGCTTTAAACGCTCCAAAAACATCCA
CGCCCTCTCCCTTCTCTCCGACGACGATCTGGTCCAAGAAACGTCCACCA
GCCCTGCCATCGAGCGTCCCTCGTTTGTGCAGGACATACGGAGAGTCTTA
TCCCTCCTCTCAACTGCAACGCCAGAGGATTTTTTTGGGCCGTCAGGGAT
GCAGGCATTGACAGTGCCCTTGCCGCGTGTGGATTTAGTCAAAGTTGTAA
GGGAGGGGGAGGAGAGAGAGGATGAGGAGGGGAGAGAGAAAAGGCGGGCT
TTGCCATGA
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Synonyms
Publications