jgi.p|Nanoce1779_2|586676, mRNA_4138 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586676
Unique NamemRNA_4138
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1091
Alignment locationscaffold_8:919442..920657 +

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Properties
Property NameValue
TranscriptId586762
TrackFilteredModels2
ProteinId586676
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:919442..920657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586676gene_4138Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586676mRNA_4138-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4138CDS_4138Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4138 ID=mRNA_4138|Name=jgi.p|Nanoce1779_2|586676|organism=Nannochloropsis oceanica|type=mRNA|length=1091bp
AGGCAGCTACAGAACCGGTGCCTGGGGGTTGCGTTCATGCCACCTGCCCC
CTGGCAGCAGCAACCATGAGGAAAGCCCTGGGCAGGGTCTGCCCTTGCTT
TGGCTTCAGATTCCGAGGTCAGCAAGAACAAGGATATGACACCGTTGCCA
CCACCACATTTAAATCAACAACCGACGTCTCCTACGGCAGCATGAGCATT
CTCTCCTTCCCCAAAAGCAACAAAGGAGGCGGAGCCGCTATTTCTGCCTC
TGACTCGTCGGCAACACCTGTGCACCCTGCCATAGCATTGCCTCGTTATG
TGATGGACGAGGAAATCGAGCGATGCTTCGGGTGCGCCGTTGCATTTGAC
TTCGTCCATCGGCGTCACCACTGTCGTCGGTGTCGAAACATCTTCTGCGC
TGCCTGCACCTCTCGAGAGCGGCCCGTCCTTCTCTACATGCTGACAGACC
CCGTTCGGGTTTGCCTTCGCTGCGGGAGTGAAGTTCTTAAAGAAAACGAC
TTTATCGATGTTCACCTCCACGCCCTTCTTAAAGGCCTTGAAGTAACCAT
GCCCAGAGGCGTTCTTGGCAAACGACATCCTGTCACTCTTCTCCTCTCCC
CCGACCTTGATACCCTCCAAGTCGTTGACCTTCCCCCCCTCCCTCCCTCC
CTCCCTCCCTCCCAACCGCGGAAAATCATCAAATCTCTCCCTTTGCTTGA
CATTGGCGGCGTCTCCGAAGAAGCTTCTCTCTCTTTCATCCTCCTCACTA
CGGCTGGCAGCAGGTTTAAGTTTGAGACGAGTGGGCCAGGCCAAAGGCAA
GCGTGGGTATGCGCGATCAGAGAAGCAGCAAAGCATCTACCTCAAATGAA
GGGATTGAAAAAAAGAGTGGAAGAGGAGAGGAGGCAGAGGGAAATGCAGG
AGAGGATGATGTTAGTAGAGAGACAGGAGAAGGAAGCATTGCTGGCCAAG
AAGAGGGAGAAGGCCGCGATGAGGAATGCGATTGCCGATAAGTACGGGCT
AGCCAGGCGGTGAGGGAGGAAGAAAAGGAGGGAGACAGGGCAGCGTAGAG
AAGAGTTGTAAGGAGCAAATGAAGGAAAGATGTGTAGACAC
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protein sequence of jgi.p|Nanoce1779_2|586676

>mRNA_4138-protein ID=mRNA_4138-protein|Name=jgi.p|Nanoce1779_2|586676|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MRKALGRVCPCFGFRFRGQQEQGYDTVATTTFKSTTDVSYGSMSILSFPK
SNKGGGAAISASDSSATPVHPAIALPRYVMDEEIERCFGCAVAFDFVHRR
HHCRRCRNIFCAACTSRERPVLLYMLTDPVRVCLRCGSEVLKENDFIDVH
LHALLKGLEVTMPRGVLGKRHPVTLLLSPDLDTLQVVDLPPLPPSLPPSQ
PRKIIKSLPLLDIGGVSEEASLSFILLTTAGSRFKFETSGPGQRQAWVCA
IREAAKHLPQMKGLKKRVEEERRQREMQERMMLVERQEKEALLAKKREKA
AMRNAIADKYGLARR*
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mRNA from alignment at scaffold_8:919442..920657+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4138 ID=mRNA_4138|Name=jgi.p|Nanoce1779_2|586676|organism=Nannochloropsis oceanica|type=mRNA|length=1216bp|location=Sequence derived from alignment at scaffold_8:919442..920657+ (Nannochloropsis oceanica)
AGGCAGCTACAGAACCGGTGCCTGGGGGTTGCGTTCATGCCACCTGCCCC
CTGGCAGCAGCAACCATGAGGAAAGCCCTGGGCAGGGTCTGCCCTTGCTT
TGGCTTCAGATTCCGAGGTCAGCAAGAACAAGGATATGACACCGTTGCCA
CCACCACATTTAAATCAACAACCGACGTCTCCTACGGCAGCATGAGCATT
CTCTCCTTCCCCAAAAGCAACAAAGGAGGCGGAGCCGCTATTTCTGCCTC
TGACTCGTCGGCAACACCTGTGCACCCTGCCATAGCATTGCCTCGTTATG
TGATGGACGAGGAAATCGAGGTAGGGAGGCTGCCACAGTTTTTTTATCCT
TCATAAGTCGCGTCTTCATGTTTGATTTTTTCCCCACTCTTCTTTCTCTC
CCTCCCTCCCTCCCTCCCTCCATCCCTCCTGCCAAAATATCACAGCGATG
CTTCGGGTGCGCCGTTGCATTTGACTTCGTCCATCGGCGTCACCACTGTC
GTCGGTGTCGAAACATCTTCTGCGCTGCCTGCACCTCTCGAGAGCGGCCC
GTCCTTCTCTACATGCTGACAGACCCCGTTCGGGTTTGCCTTCGCTGCGG
GAGTGAAGTTCTTAAAGAAAACGACTTTATCGATGTTCACCTCCACGCCC
TTCTTAAAGGCCTTGAAGTAACCATGCCCAGAGGCGTTCTTGGCAAACGA
CATCCTGTCACTCTTCTCCTCTCCCCCGACCTTGATACCCTCCAAGTCGT
TGACCTTCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCAACCGCGGAAAA
TCATCAAATCTCTCCCTTTGCTTGACATTGGCGGCGTCTCCGAAGAAGCT
TCTCTCTCTTTCATCCTCCTCACTACGGCTGGCAGCAGGTTTAAGTTTGA
GACGAGTGGGCCAGGCCAAAGGCAAGCGTGGGTATGCGCGATCAGAGAAG
CAGCAAAGCATCTACCTCAAATGAAGGGATTGAAAAAAAGAGTGGAAGAG
GAGAGGAGGCAGAGGGAAATGCAGGAGAGGATGATGTTAGTAGAGAGACA
GGAGAAGGAAGCATTGCTGGCCAAGAAGAGGGAGAAGGCCGCGATGAGGA
ATGCGATTGCCGATAAGTACGGGCTAGCCAGGCGGTGAGGGAGGAAGAAA
AGGAGGGAGACAGGGCAGCGTAGAGAAGAGTTGTAAGGAGCAAATGAAGG
AAAGATGTGTAGACAC
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Coding sequence (CDS) from alignment at scaffold_8:919442..920657+

>mRNA_4138 ID=mRNA_4138|Name=jgi.p|Nanoce1779_2|586676|organism=Nannochloropsis oceanica|type=CDS|length=1896bp|location=Sequence derived from alignment at scaffold_8:919442..920657+ (Nannochloropsis oceanica)
ATGAGGAAAGCCCTGGGCAGGGTCTGCCCTTGCTTTGGCTTCAGATTCCG
AGGTCAGCAAGAACAAGGATATGACACCGTTGCCACCACCACATTTAAAT
CAACAACCGACGTCTCCTACGGCAGCATGAGCATTCTCTCCTTCCCCAAA
AGCAACAAAGGAGGCGGAGCCGCTATTTCTGCCTCTGACTCGTCGGCAAC
ACCTGTGCACCCTGCCATAGCATTGCCTCGTTATGTGATGGACGAGGAAA
TCGAGCGATGCTTCGGGTGCGCCGTTGCATTTGACTTCGTCCATCGGCGT
CACCACTGTCGTCGGTGTCGAAACATCTTCTGCGCTGCCTGCACCTCTCG
AGAGCGGCCCGTCCTTCTCTACATGCTGACAGACCCCGTTCGGGTTTGCC
TTCGCTGCGGGAGTGAAGTTCTTAAAGAAAACGACTTTATCGATGTTCAC
CTCCACGCCCTTCTTAAAGGCCTTGAAGTAACCATGCCCAGAGGCGTTCT
TGGCAAACGACATCCTGTCACTCTTCTCCTCTCCCCCGACCTTGATACCC
TCCAAGTCGTTGACCTTCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCAA
CCGCGGAAAATCATCAAATCTCTCCCTTTGCTTGACATTGGCGGCGTCTC
CGAAGAAGCTTCTCTCTCTTTCATCCTCCTCACTACGGCTGGCAGCAGGT
TTAAGTTTGAGACGAGTGGGCCAGGCCAAAGGCAAGCGTGGGTATGCGCG
ATCAGAGAAGCAGCAAAGCATCTACCTCAAATGAAGGGATTGAAAAAAAG
AGTGGAAGAGGAGAGGAGGCAGAGGGAAATGCAGGAGAGGATGATGTTAG
TAGAGAGACAGGAGAAGGAAGCATTGCTGGCCAAGAAGAGGGAGAAGGCC
GCGATGAGGAATGCGATTGCCGATAAGTACGGGCTAGCCAGGCGGTGAAT
GAGGAAAGCCCTGGGCAGGGTCTGCCCTTGCTTTGGCTTCAGATTCCGAG
GTCAGCAAGAACAAGGATATGACACCGTTGCCACCACCACATTTAAATCA
ACAACCGACGTCTCCTACGGCAGCATGAGCATTCTCTCCTTCCCCAAAAG
CAACAAAGGAGGCGGAGCCGCTATTTCTGCCTCTGACTCGTCGGCAACAC
CTGTGCACCCTGCCATAGCATTGCCTCGTTATGTGATGGACGAGGAAATC
GAGCGATGCTTCGGGTGCGCCGTTGCATTTGACTTCGTCCATCGGCGTCA
CCACTGTCGTCGGTGTCGAAACATCTTCTGCGCTGCCTGCACCTCTCGAG
AGCGGCCCGTCCTTCTCTACATGCTGACAGACCCCGTTCGGGTTTGCCTT
CGCTGCGGGAGTGAAGTTCTTAAAGAAAACGACTTTATCGATGTTCACCT
CCACGCCCTTCTTAAAGGCCTTGAAGTAACCATGCCCAGAGGCGTTCTTG
GCAAACGACATCCTGTCACTCTTCTCCTCTCCCCCGACCTTGATACCCTC
CAAGTCGTTGACCTTCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCAACC
GCGGAAAATCATCAAATCTCTCCCTTTGCTTGACATTGGCGGCGTCTCCG
AAGAAGCTTCTCTCTCTTTCATCCTCCTCACTACGGCTGGCAGCAGGTTT
AAGTTTGAGACGAGTGGGCCAGGCCAAAGGCAAGCGTGGGTATGCGCGAT
CAGAGAAGCAGCAAAGCATCTACCTCAAATGAAGGGATTGAAAAAAAGAG
TGGAAGAGGAGAGGAGGCAGAGGGAAATGCAGGAGAGGATGATGTTAGTA
GAGAGACAGGAGAAGGAAGCATTGCTGGCCAAGAAGAGGGAGAAGGCCGC
GATGAGGAATGCGATTGCCGATAAGTACGGGCTAGCCAGGCGGTGA
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Synonyms
Publications