jgi.p|Nanoce1779_2|586667, mRNA_4136 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586667
Unique NamemRNA_4136
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1346
Alignment locationscaffold_8:913627..914972 +

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Properties
Property NameValue
TranscriptId586753
TrackFilteredModels2
ProteinId586667
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:913627..914972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586667gene_4136Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586667mRNA_4136-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4136CDS_4136Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4136 ID=mRNA_4136|Name=jgi.p|Nanoce1779_2|586667|organism=Nannochloropsis oceanica|type=mRNA|length=1346bp
ACCGGCACACGCCGCAGCTCGAGCCACGAAAAGGTGGGCGTGCCCGGTGT
GTACGTTTGTCAATGTGCAAGCGGACGACAGTGTTTCGGCGTGTTGTGAT
ATGTGCGAGACACCTCGTTCTGCTACCCCTTGGGGCTGTAGTACCTGCAC
GCTACTGAATCCCGCTGCGGAGAAGCGGTGCAAAGCCTGCGGGGAGAAGA
AAAGGAGGTGGAAGAAGAATAAGGACCACAAAAGGGGCAAAGACAAGGAC
GATGAGAAATCCAAGAGGTGGAGATATGCACAGGATATGGAGAACGAGGA
GAAGGGCAACAGTGACCTCACTGACTTGGTGTACGAAGACCGAAAGATGC
CGGCCCCCGCCCCTCCTTCTCCTCCTTCTCCCCCCATCTCCACCTCCTCC
TCCCCCTCCTTCTCAGTCTCGACTACGTCACAACCCCTCCGCATCAGCAC
CAGCAAAATAATGCGGGAAGCAGCAGCATGGAGGAAGGAGGAAGACGACG
ACGACAACGAGGACGACAACCATTTACGGGCTCGGGAGGCGTTCGCCTTG
TCCCTTTTCAATGAGTTCGTCACTTCCGATGAAGTATGGGGCGCAGGACT
TACCAGCAGTAGCAGTAGCAACAGTAGCGCAAGTGGTGATGTCAAAGGTG
GTAATCCTAGGCTAACGTGTTTATGTTGCGGGAAAATGCATAGTACTAGA
CGGATCATGGTGAGTGTAAAGGAGGGGGAGAGACGGAGGGGCGGAGGGAC
GGAGGGACGGAGGGACGGAGAACGAAACGCTGAAGAGTGCTATGTTGGTA
ATTGACTCATGCGAATACACACGCGTTGACATACTAGACCATGCATTTTG
TCAGGGACCACATTGATGAGTTCCAGGGCGAGTTGACGCTGGAGAATGAA
GAAGGCCTGCGGGCACTGCGTCTCCAAGCAGATGCACAGCTCGCCCTGAC
GTTGCAAGCGAGGGAGATGGAGGGAGAGGAGGAGGAGAAGAAGGAGAGGG
GGGGGGAGGATGAGGAGGAGGAGATGAGGAGGAGGGTATTTGCGAGGGTT
CGGAATTCCGATGAGGACGGGAAGTTACTGTTGCCGTTTTCGAGGGCTGG
CAAGGCGGTGATGAGGAACGTGGCCGGAGGGAGGAGAGGGGGGAGGGGGA
GGGAGAGGAAGATGAAAGAGGAGAAGGAGAAGAAGAAGCGGGTACGGTTG
TCTTGGTCAGACGAGGAGAAGGAAAAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGAGTGACGATGACAGCGATAGTGACGACGAGGGTGTGGTGGGTCATT
GGGGGGGTAGGAGGGGGGAGGAGGAGGAGGAGGAGGCTATGGAAGG
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protein sequence of jgi.p|Nanoce1779_2|586667

>mRNA_4136-protein ID=mRNA_4136-protein|Name=jgi.p|Nanoce1779_2|586667|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MCETPRSATPWGCSTCTLLNPAAEKRCKACGEKKRRWKKNKDHKRGKDKD
DEKSKRWRYAQDMENEEKGNSDLTDLVYEDRKMPAPAPPSPPSPPISTSS
SPSFSVSTTSQPLRISTSKIMREAAAWRKEEDDDDNEDDNHLRAREAFAL
SLFNEFVTSDEVWGAGLTSSSSSNSSASGDVKGGNPRLTCLCCGKMHSTR
RIMVSVKEGERRRGGGTEGRRDGERNAEECYVGN*
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mRNA from alignment at scaffold_8:913627..914972+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4136 ID=mRNA_4136|Name=jgi.p|Nanoce1779_2|586667|organism=Nannochloropsis oceanica|type=mRNA|length=1346bp|location=Sequence derived from alignment at scaffold_8:913627..914972+ (Nannochloropsis oceanica)
ACCGGCACACGCCGCAGCTCGAGCCACGAAAAGGTGGGCGTGCCCGGTGT
GTACGTTTGTCAATGTGCAAGCGGACGACAGTGTTTCGGCGTGTTGTGAT
ATGTGCGAGACACCTCGTTCTGCTACCCCTTGGGGCTGTAGTACCTGCAC
GCTACTGAATCCCGCTGCGGAGAAGCGGTGCAAAGCCTGCGGGGAGAAGA
AAAGGAGGTGGAAGAAGAATAAGGACCACAAAAGGGGCAAAGACAAGGAC
GATGAGAAATCCAAGAGGTGGAGATATGCACAGGATATGGAGAACGAGGA
GAAGGGCAACAGTGACCTCACTGACTTGGTGTACGAAGACCGAAAGATGC
CGGCCCCCGCCCCTCCTTCTCCTCCTTCTCCCCCCATCTCCACCTCCTCC
TCCCCCTCCTTCTCAGTCTCGACTACGTCACAACCCCTCCGCATCAGCAC
CAGCAAAATAATGCGGGAAGCAGCAGCATGGAGGAAGGAGGAAGACGACG
ACGACAACGAGGACGACAACCATTTACGGGCTCGGGAGGCGTTCGCCTTG
TCCCTTTTCAATGAGTTCGTCACTTCCGATGAAGTATGGGGCGCAGGACT
TACCAGCAGTAGCAGTAGCAACAGTAGCGCAAGTGGTGATGTCAAAGGTG
GTAATCCTAGGCTAACGTGTTTATGTTGCGGGAAAATGCATAGTACTAGA
CGGATCATGGTGAGTGTAAAGGAGGGGGAGAGACGGAGGGGCGGAGGGAC
GGAGGGACGGAGGGACGGAGAACGAAACGCTGAAGAGTGCTATGTTGGTA
ATTGACTCATGCGAATACACACGCGTTGACATACTAGACCATGCATTTTG
TCAGGGACCACATTGATGAGTTCCAGGGCGAGTTGACGCTGGAGAATGAA
GAAGGCCTGCGGGCACTGCGTCTCCAAGCAGATGCACAGCTCGCCCTGAC
GTTGCAAGCGAGGGAGATGGAGGGAGAGGAGGAGGAGAAGAAGGAGAGGG
GGGGGGAGGATGAGGAGGAGGAGATGAGGAGGAGGGTATTTGCGAGGGTT
CGGAATTCCGATGAGGACGGGAAGTTACTGTTGCCGTTTTCGAGGGCTGG
CAAGGCGGTGATGAGGAACGTGGCCGGAGGGAGGAGAGGGGGGAGGGGGA
GGGAGAGGAAGATGAAAGAGGAGAAGGAGAAGAAGAAGCGGGTACGGTTG
TCTTGGTCAGACGAGGAGAAGGAAAAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGAGTGACGATGACAGCGATAGTGACGACGAGGGTGTGGTGGGTCATT
GGGGGGGTAGGAGGGGGGAGGAGGAGGAGGAGGAGGCTATGGAAGG
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Coding sequence (CDS) from alignment at scaffold_8:913627..914972+

>mRNA_4136 ID=mRNA_4136|Name=jgi.p|Nanoce1779_2|586667|organism=Nannochloropsis oceanica|type=CDS|length=705bp|location=Sequence derived from alignment at scaffold_8:913627..914972+ (Nannochloropsis oceanica)
ATGTGCGAGACACCTCGTTCTGCTACCCCTTGGGGCTGTAGTACCTGCAC
GCTACTGAATCCCGCTGCGGAGAAGCGGTGCAAAGCCTGCGGGGAGAAGA
AAAGGAGGTGGAAGAAGAATAAGGACCACAAAAGGGGCAAAGACAAGGAC
GATGAGAAATCCAAGAGGTGGAGATATGCACAGGATATGGAGAACGAGGA
GAAGGGCAACAGTGACCTCACTGACTTGGTGTACGAAGACCGAAAGATGC
CGGCCCCCGCCCCTCCTTCTCCTCCTTCTCCCCCCATCTCCACCTCCTCC
TCCCCCTCCTTCTCAGTCTCGACTACGTCACAACCCCTCCGCATCAGCAC
CAGCAAAATAATGCGGGAAGCAGCAGCATGGAGGAAGGAGGAAGACGACG
ACGACAACGAGGACGACAACCATTTACGGGCTCGGGAGGCGTTCGCCTTG
TCCCTTTTCAATGAGTTCGTCACTTCCGATGAAGTATGGGGCGCAGGACT
TACCAGCAGTAGCAGTAGCAACAGTAGCGCAAGTGGTGATGTCAAAGGTG
GTAATCCTAGGCTAACGTGTTTATGTTGCGGGAAAATGCATAGTACTAGA
CGGATCATGGTGAGTGTAAAGGAGGGGGAGAGACGGAGGGGCGGAGGGAC
GGAGGGACGGAGGGACGGAGAACGAAACGCTGAAGAGTGCTATGTTGGTA
ATTGA
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Synonyms
Publications