jgi.p|Nanoce1779_2|586665, mRNA_4135 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586665
Unique NamemRNA_4135
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1368
Alignment locationscaffold_8:911446..913060 -

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Properties
Property NameValue
TranscriptId586751
TrackFilteredModels2
ProteinId586665
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:911446..913060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586665gene_4135Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586665mRNA_4135-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4135CDS_4135Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4135 ID=mRNA_4135|Name=jgi.p|Nanoce1779_2|586665|organism=Nannochloropsis oceanica|type=mRNA|length=1368bp
ACAGAAGCAACTAACAAGCGAGGACGCGTCTAGAATGAAGGGAGCATTTG
CTGTTACCGCCTTGGTCTTAGCCACGGCGTCCTTCCAGGGTGCCGATGCC
TTTGTGGGCTCCAGTTTTAAAGCCCGCAGACATGCTCTGCCAAGGCTGCA
CGCCCGAAAGCCCGACCAGGTTTTCAACACCAAGGAGTCTTTCGCCCCCA
TCATACCTGGCTTATCCGTTTCCCCCGACCTGCTAGACGTGAAGGAAATG
GCCAAAGCCACTGCTTTCATGGCTCCGTTGGTATTGGGGGCGTCGGATGC
CATGGCCAAGGGGGGGGAGTACGGCGTGTTGGAGGGACGAACGTTCGCCT
TCGTCCACCCGACGGTGATGGGCATTTTGTTTTTGACGACTGCGTACACG
GGGTATTTGGGGTGGCAGTGGCGCTCGATTCGTACTCTTGCGGGGGATAT
CAACGCCTTGAAGGAGGCCCTGCCGAAGCTCTCGGATGGCAGTAAAGTGA
CCATGCCGGTCGCCAAGCAGATTGCTTCGGTGGAAGGGGTATTGAAGAGC
ATGGGTGAGGGAGACGAAGAAGCAGCGCAGCTTAAGGCTGATTTGAGTGT
GTTGCGCTCGGCGACTGTCAAGGAGATCGATGCTCAAGTGGCGGAGTTGA
GCGAGAGACGCAAGGCCCTTTTGTCCGGTGACTTCCGGGACCGACATTAT
AACACCGCATCGACGCTACTGGGTCTTGGTGTCTTCACTTCCATCCTGGG
TGGGTTCAACACGTTTTTCCGTGCTGGGAAATTGTTCCCCGGGCCCCACC
TGTACGCTGGTGCGGGGATCACGGCTCTGTGGGCGGCGGCTGCTGCGCTG
GTACCGGCGATGCAGAAGGGGAATGACACGGCGAGATCTTTGCACATCGG
TCTCAACGCCCTGAACATGGCGTTGTTTGCATGGCAGGTGGGTACGGGGT
TGGAGATTGCGATTAAAGTTTGGGGGTTCACGAAGTGGCCGTAGAGAGGA
GTGGAGGAAGGGACGGTACAGATGGCGGGGGCTGACGGGGTAGGTGGGAT
ACAAGAATGAACGGACACACGGCACACTACCTTTTCTTGAGGGTTGGCTA
TTGTGTGGTAGCGAGTGATTGATTGAGTGAAGGAAGGAAGGAGCGCAGAT
GTAGTTGAGATGTGATTGGGGGATGAGTATCGCTCCATACACGATTGAAG
GCACAGCGACAACCATGACAATGACCTTTAGAGATAAGCAATCCGTGACT
GCTTAAGACGTGGAAAGAGGATTCATAGAGATGATGGGGAGCTGAACACA
AAAAGAAAACAGTTGTTCACAACAACAATTATAAAAATCCAATGGAAAAA
CGACACACTCCGTCAGAG
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protein sequence of jgi.p|Nanoce1779_2|586665

>mRNA_4135-protein ID=mRNA_4135-protein|Name=jgi.p|Nanoce1779_2|586665|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MKGAFAVTALVLATASFQGADAFVGSSFKARRHALPRLHARKPDQVFNTK
ESFAPIIPGLSVSPDLLDVKEMAKATAFMAPLVLGASDAMAKGGEYGVLE
GRTFAFVHPTVMGILFLTTAYTGYLGWQWRSIRTLAGDINALKEALPKLS
DGSKVTMPVAKQIASVEGVLKSMGEGDEEAAQLKADLSVLRSATVKEIDA
QVAELSERRKALLSGDFRDRHYNTASTLLGLGVFTSILGGFNTFFRAGKL
FPGPHLYAGAGITALWAAAAALVPAMQKGNDTARSLHIGLNALNMALFAW
QVGTGLEIAIKVWGFTKWP*
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mRNA from alignment at scaffold_8:911446..913060-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4135 ID=mRNA_4135|Name=jgi.p|Nanoce1779_2|586665|organism=Nannochloropsis oceanica|type=mRNA|length=1615bp|location=Sequence derived from alignment at scaffold_8:911446..913060- (Nannochloropsis oceanica)
ACAGAAGCAACTAACAAGCGAGGACGCGTCTAGAATGAAGGGAGCATTTG
CTGTTACCGCCTTGGTCTTAGCCACGGCGTCCTTCCAGGGTGCCGATGCC
TTTGTGGGCTCCAGTTTTAAAGGTGCGTTTGGCTGCGGGTGGATTGGGGT
TGGGTTTTGGTCGTGCGTGTGTGATTAGAGCCCCTTCGTGTAGTCCTATC
CGCGAGGTATGTCCCAGAGACCCTTCCCCCATCCGCCCACACATTCACGT
CTTCGTCTTTTAATGAAGGACCCTGTCAAAGCATGTACATCGCCAGCCAG
CGTATGGCCTTGTCAACCTGACCACCGCCTCTCACCTGCATCTACTCTTT
TTCTCCCCACCACCCACAGCCCGCAGACATGCTCTGCCAAGGCTGCACGC
CCGAAAGCCCGACCAGGTTTTCAACACCAAGGAGTCTTTCGCCCCCATCA
TACCTGGCTTATCCGTTTCCCCCGACCTGCTAGACGTGAAGGAAATGGCC
AAAGCCACTGCTTTCATGGCTCCGTTGGTATTGGGGGCGTCGGATGCCAT
GGCCAAGGGGGGGGAGTACGGCGTGTTGGAGGGACGAACGTTCGCCTTCG
TCCACCCGACGGTGATGGGCATTTTGTTTTTGACGACTGCGTACACGGGG
TATTTGGGGTGGCAGTGGCGCTCGATTCGTACTCTTGCGGGGGATATCAA
CGCCTTGAAGGAGGCCCTGCCGAAGCTCTCGGATGGCAGTAAAGTGACCA
TGCCGGTCGCCAAGCAGATTGCTTCGGTGGAAGGGGTATTGAAGAGCATG
GGTGAGGGAGACGAAGAAGCAGCGCAGCTTAAGGCTGATTTGAGTGTGTT
GCGCTCGGCGACTGTCAAGGAGATCGATGCTCAAGTGGCGGAGTTGAGCG
AGAGACGCAAGGCCCTTTTGTCCGGTGACTTCCGGGACCGACATTATAAC
ACCGCATCGACGCTACTGGGTCTTGGTGTCTTCACTTCCATCCTGGGTGG
GTTCAACACGTTTTTCCGTGCTGGGAAATTGTTCCCCGGGCCCCACCTGT
ACGCTGGTGCGGGGATCACGGCTCTGTGGGCGGCGGCTGCTGCGCTGGTA
CCGGCGATGCAGAAGGGGAATGACACGGCGAGATCTTTGCACATCGGTCT
CAACGCCCTGAACATGGCGTTGTTTGCATGGCAGGTGGGTACGGGGTTGG
AGATTGCGATTAAAGTTTGGGGGTTCACGAAGTGGCCGTAGAGAGGAGTG
GAGGAAGGGACGGTACAGATGGCGGGGGCTGACGGGGTAGGTGGGATACA
AGAATGAACGGACACACGGCACACTACCTTTTCTTGAGGGTTGGCTATTG
TGTGGTAGCGAGTGATTGATTGAGTGAAGGAAGGAAGGAGCGCAGATGTA
GTTGAGATGTGATTGGGGGATGAGTATCGCTCCATACACGATTGAAGGCA
CAGCGACAACCATGACAATGACCTTTAGAGATAAGCAATCCGTGACTGCT
TAAGACGTGGAAAGAGGATTCATAGAGATGATGGGGAGCTGAACACAAAA
AGAAAACAGTTGTTCACAACAACAATTATAAAAATCCAATGGAAAAACGA
CACACTCCGTCAGAG
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Coding sequence (CDS) from alignment at scaffold_8:911446..913060-

>mRNA_4135 ID=mRNA_4135|Name=jgi.p|Nanoce1779_2|586665|organism=Nannochloropsis oceanica|type=CDS|length=1920bp|location=Sequence derived from alignment at scaffold_8:911446..913060- (Nannochloropsis oceanica)
CCCGCAGACATGCTCTGCCAAGGCTGCACGCCCGAAAGCCCGACCAGGTT
TTCAACACCAAGGAGTCTTTCGCCCCCATCATACCTGGCTTATCCGTTTC
CCCCGACCTGCTAGACGTGAAGGAAATGGCCAAAGCCACTGCTTTCATGG
CTCCGTTGGTATTGGGGGCGTCGGATGCCATGGCCAAGGGGGGGGAGTAC
GGCGTGTTGGAGGGACGAACGTTCGCCTTCGTCCACCCGACGGTGATGGG
CATTTTGTTTTTGACGACTGCGTACACGGGGTATTTGGGGTGGCAGTGGC
GCTCGATTCGTACTCTTGCGGGGGATATCAACGCCTTGAAGGAGGCCCTG
CCGAAGCTCTCGGATGGCAGTAAAGTGACCATGCCGGTCGCCAAGCAGAT
TGCTTCGGTGGAAGGGGTATTGAAGAGCATGGGTGAGGGAGACGAAGAAG
CAGCGCAGCTTAAGGCTGATTTGAGTGTGTTGCGCTCGGCGACTGTCAAG
GAGATCGATGCTCAAGTGGCGGAGTTGAGCGAGAGACGCAAGGCCCTTTT
GTCCGGTGACTTCCGGGACCGACATTATAACACCGCATCGACGCTACTGG
GTCTTGGTGTCTTCACTTCCATCCTGGGTGGGTTCAACACGTTTTTCCGT
GCTGGGAAATTGTTCCCCGGGCCCCACCTGTACGCTGGTGCGGGGATCAC
GGCTCTGTGGGCGGCGGCTGCTGCGCTGGTACCGGCGATGCAGAAGGGGA
ATGACACGGCGAGATCTTTGCACATCGGTCTCAACGCCCTGAACATGGCG
TTGTTTGCATGGCAGGTGGGTACGGGGTTGGAGATTGCGATTAAAGTTTG
GGGGTTCACGAAGTGGCCGTAGATGAAGGGAGCATTTGCTGTTACCGCCT
TGGTCTTAGCCACGGCGTCCTTCCAGGGTGCCGATGCCTTTGTGGGCTCC
AGTTTTAAAGCCCGCAGACATGCTCTGCCAAGGCTGCACGCCCGAAAGCC
CGACCAGGTTTTCAACACCAAGGAGTCTTTCGCCCCCATCATACCTGGCT
TATCCGTTTCCCCCGACCTGCTAGACGTGAAGGAAATGGCCAAAGCCACT
GCTTTCATGGCTCCGTTGGTATTGGGGGCGTCGGATGCCATGGCCAAGGG
GGGGGAGTACGGCGTGTTGGAGGGACGAACGTTCGCCTTCGTCCACCCGA
CGGTGATGGGCATTTTGTTTTTGACGACTGCGTACACGGGGTATTTGGGG
TGGCAGTGGCGCTCGATTCGTACTCTTGCGGGGGATATCAACGCCTTGAA
GGAGGCCCTGCCGAAGCTCTCGGATGGCAGTAAAGTGACCATGCCGGTCG
CCAAGCAGATTGCTTCGGTGGAAGGGGTATTGAAGAGCATGGGTGAGGGA
GACGAAGAAGCAGCGCAGCTTAAGGCTGATTTGAGTGTGTTGCGCTCGGC
GACTGTCAAGGAGATCGATGCTCAAGTGGCGGAGTTGAGCGAGAGACGCA
AGGCCCTTTTGTCCGGTGACTTCCGGGACCGACATTATAACACCGCATCG
ACGCTACTGGGTCTTGGTGTCTTCACTTCCATCCTGGGTGGGTTCAACAC
GTTTTTCCGTGCTGGGAAATTGTTCCCCGGGCCCCACCTGTACGCTGGTG
CGGGGATCACGGCTCTGTGGGCGGCGGCTGCTGCGCTGGTACCGGCGATG
CAGAAGGGGAATGACACGGCGAGATCTTTGCACATCGGTCTCAACGCCCT
GAACATGGCGTTGTTTGCATGGCAGGTGGGTACGGGGTTGGAGATTGCGA
TTAAAGTTTGGGGGTTCACGAAGTGGCCGTAGATGAAGGGAGCATTTGCT
GTTACCGCCTTGGTCTTAGCCACGGCGTCCTTCCAGGGTGCCGATGCCTT
TGTGGGCTCCAGTTTTAAAG
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Synonyms
Publications