jgi.p|Nanoce1779_2|586663, mRNA_4134 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586663
Unique NamemRNA_4134
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1326
Alignment locationscaffold_8:910157..911482 +

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Properties
Property NameValue
TranscriptId586749
TrackFilteredModels2
ProteinId586663
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:910157..911482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586663gene_4134Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586663mRNA_4134-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4134CDS_4134Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4134 ID=mRNA_4134|Name=jgi.p|Nanoce1779_2|586663|organism=Nannochloropsis oceanica|type=mRNA|length=1326bp
ACAGACTGCAACACCAGGAGCAGCACATCTACAACCACAGGAACAATCAT
GGAAGCCGGCCAGTCACCACCAGTCCCTCCATCTGCTCCAACCGCCCCTG
CCGTCCCTCCTATCTCCCCTCCCTCCACCGACGACCCCCTCATAGCCATT
TTCCGGGCCAAGCTGAAAGCCGAGGTCCCTGTACCCATAGCGGGTGTCCA
AACGCTGTTGCATGTCATGAGCAATAGCCGTGCCGTCACCATCATGGGCA
TTCAGAACGACTTGCAAGAAGCCACCAAGAAGTTGATAGACTACGAACGA
CAAATGAGTCGAGGCCGGGCCTCCATCTCCTTTCGGGCGGGGGTCGAGCT
GTTCTTCCGCTATGCCACGCGCAACAACGACGACGTCCCAGATTTTAATG
CCCTTAATCAATTATTCATCACGCGGGGGAATCGTTTTGTTTCGAATGCA
TTGAAAAGCCGCGAAGTGATTGCTGAGCTTGGGCACAATTTCGTGCAAGA
TGGAATGGTGATCTTAATGCACGGCCGCTCTGAAGTGGTGACCGGCGTCC
TGACCCGTGCCGCGCAGAATAATAAAAATTTCACTGTGATGATCACGGAA
GGTCGCCCGGAGGGTTCTGGATTCAAGGCAGCGGAGCGATTGACTGAAGT
TGGGATCCCCGTGACGGTGATATTGGACTCGGCCGCTGGGTACTTTATGG
AGAGGGTTGACATTGTATTGTTGGGCGCTGAGGGGGTGGTGGAGAGCGGG
GGGATCGTGAATAAGATTGGGACATGCCAAATAGCCATGGTGGCCAAGTT
GTACAATAAACCGTTGTATGTCGCGGCGGAGAGCTATAAATTTGCCAGGC
TTTATCCATTGACCCAGGCGGATTTGGAGGAGAATATCGATAACGATTTA
AACCGGCCGTTGGTTCCCCCCATGCAGAGCGACAGTAGCGGCACTAGTAG
CAGTAGTAGTAGCAGTTGTAGCAGTAGCAACAGTAGTAGCGCCTTGCGTT
CATCGGTAGTGGTAGGAGATGGGGGTAATGTTGGGTTCGAGAGTGGGAGT
GTGGCGGGGGTCGCGGCAATGGTGACGACGCAGAATCCAAGCTGTGACTA
CACTCCGGCGACGTACATCAGTCTGTTGTTTACGGATTTAGGTATCCTGA
CCCCTGCAGCCGTGTCGGATGAACTGATCAAATTGTATCAATGAAATTCG
TTTTTTGACATCCCAAAGAAAGGAGGAAGGGAGAAGGTAAGGAAACAAAC
CGGGCGCATGTAAGATGGAGGGAGGAGAGGGGGATGATGCTCTGACGGAG
TGTGTCGTTTTTCCATTGGATTTTTA
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protein sequence of jgi.p|Nanoce1779_2|586663

>mRNA_4134-protein ID=mRNA_4134-protein|Name=jgi.p|Nanoce1779_2|586663|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MEAGQSPPVPPSAPTAPAVPPISPPSTDDPLIAIFRAKLKAEVPVPIAGV
QTLLHVMSNSRAVTIMGIQNDLQEATKKLIDYERQMSRGRASISFRAGVE
LFFRYATRNNDDVPDFNALNQLFITRGNRFVSNALKSREVIAELGHNFVQ
DGMVILMHGRSEVVTGVLTRAAQNNKNFTVMITEGRPEGSGFKAAERLTE
VGIPVTVILDSAAGYFMERVDIVLLGAEGVVESGGIVNKIGTCQIAMVAK
LYNKPLYVAAESYKFARLYPLTQADLEENIDNDLNRPLVPPMQSDSSGTS
SSSSSSCSSSNSSSALRSSVVVGDGGNVGFESGSVAGVAAMVTTQNPSCD
YTPATYISLLFTDLGILTPAAVSDELIKLYQ*
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mRNA from alignment at scaffold_8:910157..911482+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4134 ID=mRNA_4134|Name=jgi.p|Nanoce1779_2|586663|organism=Nannochloropsis oceanica|type=mRNA|length=1326bp|location=Sequence derived from alignment at scaffold_8:910157..911482+ (Nannochloropsis oceanica)
ACAGACTGCAACACCAGGAGCAGCACATCTACAACCACAGGAACAATCAT
GGAAGCCGGCCAGTCACCACCAGTCCCTCCATCTGCTCCAACCGCCCCTG
CCGTCCCTCCTATCTCCCCTCCCTCCACCGACGACCCCCTCATAGCCATT
TTCCGGGCCAAGCTGAAAGCCGAGGTCCCTGTACCCATAGCGGGTGTCCA
AACGCTGTTGCATGTCATGAGCAATAGCCGTGCCGTCACCATCATGGGCA
TTCAGAACGACTTGCAAGAAGCCACCAAGAAGTTGATAGACTACGAACGA
CAAATGAGTCGAGGCCGGGCCTCCATCTCCTTTCGGGCGGGGGTCGAGCT
GTTCTTCCGCTATGCCACGCGCAACAACGACGACGTCCCAGATTTTAATG
CCCTTAATCAATTATTCATCACGCGGGGGAATCGTTTTGTTTCGAATGCA
TTGAAAAGCCGCGAAGTGATTGCTGAGCTTGGGCACAATTTCGTGCAAGA
TGGAATGGTGATCTTAATGCACGGCCGCTCTGAAGTGGTGACCGGCGTCC
TGACCCGTGCCGCGCAGAATAATAAAAATTTCACTGTGATGATCACGGAA
GGTCGCCCGGAGGGTTCTGGATTCAAGGCAGCGGAGCGATTGACTGAAGT
TGGGATCCCCGTGACGGTGATATTGGACTCGGCCGCTGGGTACTTTATGG
AGAGGGTTGACATTGTATTGTTGGGCGCTGAGGGGGTGGTGGAGAGCGGG
GGGATCGTGAATAAGATTGGGACATGCCAAATAGCCATGGTGGCCAAGTT
GTACAATAAACCGTTGTATGTCGCGGCGGAGAGCTATAAATTTGCCAGGC
TTTATCCATTGACCCAGGCGGATTTGGAGGAGAATATCGATAACGATTTA
AACCGGCCGTTGGTTCCCCCCATGCAGAGCGACAGTAGCGGCACTAGTAG
CAGTAGTAGTAGCAGTTGTAGCAGTAGCAACAGTAGTAGCGCCTTGCGTT
CATCGGTAGTGGTAGGAGATGGGGGTAATGTTGGGTTCGAGAGTGGGAGT
GTGGCGGGGGTCGCGGCAATGGTGACGACGCAGAATCCAAGCTGTGACTA
CACTCCGGCGACGTACATCAGTCTGTTGTTTACGGATTTAGGTATCCTGA
CCCCTGCAGCCGTGTCGGATGAACTGATCAAATTGTATCAATGAAATTCG
TTTTTTGACATCCCAAAGAAAGGAGGAAGGGAGAAGGTAAGGAAACAAAC
CGGGCGCATGTAAGATGGAGGGAGGAGAGGGGGATGATGCTCTGACGGAG
TGTGTCGTTTTTCCATTGGATTTTTA
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Coding sequence (CDS) from alignment at scaffold_8:910157..911482+

>mRNA_4134 ID=mRNA_4134|Name=jgi.p|Nanoce1779_2|586663|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at scaffold_8:910157..911482+ (Nannochloropsis oceanica)
ATGGAAGCCGGCCAGTCACCACCAGTCCCTCCATCTGCTCCAACCGCCCC
TGCCGTCCCTCCTATCTCCCCTCCCTCCACCGACGACCCCCTCATAGCCA
TTTTCCGGGCCAAGCTGAAAGCCGAGGTCCCTGTACCCATAGCGGGTGTC
CAAACGCTGTTGCATGTCATGAGCAATAGCCGTGCCGTCACCATCATGGG
CATTCAGAACGACTTGCAAGAAGCCACCAAGAAGTTGATAGACTACGAAC
GACAAATGAGTCGAGGCCGGGCCTCCATCTCCTTTCGGGCGGGGGTCGAG
CTGTTCTTCCGCTATGCCACGCGCAACAACGACGACGTCCCAGATTTTAA
TGCCCTTAATCAATTATTCATCACGCGGGGGAATCGTTTTGTTTCGAATG
CATTGAAAAGCCGCGAAGTGATTGCTGAGCTTGGGCACAATTTCGTGCAA
GATGGAATGGTGATCTTAATGCACGGCCGCTCTGAAGTGGTGACCGGCGT
CCTGACCCGTGCCGCGCAGAATAATAAAAATTTCACTGTGATGATCACGG
AAGGTCGCCCGGAGGGTTCTGGATTCAAGGCAGCGGAGCGATTGACTGAA
GTTGGGATCCCCGTGACGGTGATATTGGACTCGGCCGCTGGGTACTTTAT
GGAGAGGGTTGACATTGTATTGTTGGGCGCTGAGGGGGTGGTGGAGAGCG
GGGGGATCGTGAATAAGATTGGGACATGCCAAATAGCCATGGTGGCCAAG
TTGTACAATAAACCGTTGTATGTCGCGGCGGAGAGCTATAAATTTGCCAG
GCTTTATCCATTGACCCAGGCGGATTTGGAGGAGAATATCGATAACGATT
TAAACCGGCCGTTGGTTCCCCCCATGCAGAGCGACAGTAGCGGCACTAGT
AGCAGTAGTAGTAGCAGTTGTAGCAGTAGCAACAGTAGTAGCGCCTTGCG
TTCATCGGTAGTGGTAGGAGATGGGGGTAATGTTGGGTTCGAGAGTGGGA
GTGTGGCGGGGGTCGCGGCAATGGTGACGACGCAGAATCCAAGCTGTGAC
TACACTCCGGCGACGTACATCAGTCTGTTGTTTACGGATTTAGGTATCCT
GACCCCTGCAGCCGTGTCGGATGAACTGATCAAATTGTATCAATGA
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Synonyms
Publications