jgi.p|Nanoce1779_2|586656, mRNA_4133 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586656
Unique NamemRNA_4133
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length883
Alignment locationscaffold_8:908637..909786 -

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Properties
Property NameValue
TranscriptId586742
TrackFilteredModels2
ProteinId586656
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:908637..909786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586656gene_4133Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586656mRNA_4133-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4133CDS_4133Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4133 ID=mRNA_4133|Name=jgi.p|Nanoce1779_2|586656|organism=Nannochloropsis oceanica|type=mRNA|length=883bp
AGCGTCGTCGTCGGCACGCCTCGGTACGTATTTGGCCCGTGCATGGTATG
TGCGTCAAACGTCAGCAGCCCTTTTTATCCCCCTGCAACCCTCCCCACCT
CATCCACTCACAGCCTCCCGTGCTGCCACGTCCCTCCTTCCATCTACCTC
TATCTACCACGCCTTCTATAAACGATATATCTCATTCAACTCCCTGCTTG
CTGCCGCCTCTGACGGTGCCGGTGCCTCCATGAATGACGACGACGACGAC
GAGGCCATTCCGGGCAAGATGAAAGTAGGTGAGATCAAGGCCGAGTTGGA
CTTGCGTGGCGTCACCTATGCCGGCGTTTTTGAACGATCAGATCTAGAAA
TACTACTGCTTAAGGCACGGATGGAGGGGAAGGCGCGCCCGGAGATTTTA
GACACGTTCAACCAGCAACGCGAGGATGAGGAAAAACGGGCGGGACGGGC
GACACCGGACTTCGACTGGGACGCGGCCAAGGCAGGCGATGGAAACTTGC
CCGGTGGCGTCGACCCAGAGGCGCTTCAGAAATTGACAAGCAGTCAGGAA
ATGATGGAGATAATGAGTAATCCTCGCTTGCAGGAGCTCATGAAAGCCGT
CATGTCCAAGGATAATGAAACCATGCAGAAATATATGGCCGATGCTGAGA
TACTCCAGTTGATGGCTCGATTTCAAAAGCTTTCCCAAGAGGCAGGTATT
GACCCCAGCATGTTCCCGCCCCCGCCAGGGATGAGTGATCGGGCGTGAGC
AAGGGAGGGTAAAAGAAGGGATTACGTTTGGTGCACGTTACAGCGCAAAA
GAAAGGGAAGTAGAAGTCAAGTGAAAGAATAACAAAGTGCTTTCACTAAG
TAATGAAGAGGGAACGTACGTCTTGGTACAGAA
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protein sequence of jgi.p|Nanoce1779_2|586656

>mRNA_4133-protein ID=mRNA_4133-protein|Name=jgi.p|Nanoce1779_2|586656|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MNDDDDDEAIPGKMKVGEIKAELDLRGVTYAGVFERSDLEILLLKARMEG
KARPEILDTFNQQREDEEKRAGRATPDFDWDAAKAGDGNLPGGVDPEALQ
KLTSSQEMMEIMSNPRLQELMKAVMSKDNETMQKYMADAEILQLMARFQK
LSQEAGIDPSMFPPPPGMSDRA*
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mRNA from alignment at scaffold_8:908637..909786-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4133 ID=mRNA_4133|Name=jgi.p|Nanoce1779_2|586656|organism=Nannochloropsis oceanica|type=mRNA|length=1150bp|location=Sequence derived from alignment at scaffold_8:908637..909786- (Nannochloropsis oceanica)
AGCGTCGTCGTCGGCACGCCTCGGTACGTATTTGGCCCGTGCATGGTATG
TGCGTCAAACGTCAGCAGCCCTTTTTATCCCCCTGCAACCCTCCCCACCT
CATCCACTCACAGCCTCCCGTGCTGCCACGTCCCTCCTTCCATCTACCTC
TATCTACCACGCCTTCTATAAACGATATATCTCATTCAACTCCCTGCTTG
CTGCCGCCTCTGACGGTGCCGGTGCCTCCATGAATGACGACGACGACGAC
GAGGCCATTCCGGGCAAGATGAAAGTAGGTGAGATCAAGGCCGAGTTGGA
CTTGCGTGGCGTCACCTATGCCGGCGTTTTTGAACGATCAGATCTAGAAA
TACTACTGCTTAAGGCACGGATGGAGGGGAAGGCGCGCCCGGAGATTTTA
GACACGTTCAACCAGCAACGGTGGGAATGATGGGAGGGAGGGGAGAGGGG
AGAAGAATGCATGGTGTGGGTTCGTCGGAGTAGGAGAGGGAGAACTCATG
GCAGTATATTTGTGGCATTCTTCTTATATTTATTTCTACAATCCCTCATG
TAATCCTACAGCGAGGATGAGGAAAAACGGGCGGGACGGGCGACACCGGA
CTTCGACTGGGACGCGGCCAAGGCAGGCGATGGAAACTTGCCCGGTGGCG
TCGACCCAGAGGCGCTTCAGAAATTGACAAGCAGTCAGGAAATGATGGAG
ATAATGAGTAATCCTCGCTTGCAGGTACGCTTGCCTGGGAAAAGCAAGTA
AAATGTGCCGCCTTGTGACAGAATAACCTCATTTTCTCCTGTCAGTTTTA
TAGTAGTGGTTGGCTTCAGATACATTAATCCCACATTCCAATTCTTACAG
GAGCTCATGAAAGCCGTCATGTCCAAGGATAATGAAACCATGCAGAAATA
TATGGCCGATGCTGAGATACTCCAGTTGATGGCTCGATTTCAAAAGCTTT
CCCAAGAGGCAGGTATTGACCCCAGCATGTTCCCGCCCCCGCCAGGGATG
AGTGATCGGGCGTGAGCAAGGGAGGGTAAAAGAAGGGATTACGTTTGGTG
CACGTTACAGCGCAAAAGAAAGGGAAGTAGAAGTCAAGTGAAAGAATAAC
AAAGTGCTTTCACTAAGTAATGAAGAGGGAACGTACGTCTTGGTACAGAA
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Coding sequence (CDS) from alignment at scaffold_8:908637..909786-

>mRNA_4133 ID=mRNA_4133|Name=jgi.p|Nanoce1779_2|586656|organism=Nannochloropsis oceanica|type=CDS|length=1557bp|location=Sequence derived from alignment at scaffold_8:908637..909786- (Nannochloropsis oceanica)
GAGCTCATGAAAGCCGTCATGTCCAAGGATAATGAAACCATGCAGAAATA
TATGGCCGATGCTGAGATACTCCAGTTGATGGCTCGATTTCAAAAGCTTT
CCCAAGAGGCAGGTATTGACCCCAGCATGTTCCCGCCCCCGCCAGGGATG
AGTGATCGGGCGTGACGAGGATGAGGAAAAACGGGCGGGACGGGCGACAC
CGGACTTCGACTGGGACGCGGCCAAGGCAGGCGATGGAAACTTGCCCGGT
GGCGTCGACCCAGAGGCGCTTCAGAAATTGACAAGCAGTCAGGAAATGAT
GGAGATAATGAGTAATCCTCGCTTGCAGATGAATGACGACGACGACGACG
AGGCCATTCCGGGCAAGATGAAAGTAGGTGAGATCAAGGCCGAGTTGGAC
TTGCGTGGCGTCACCTATGCCGGCGTTTTTGAACGATCAGATCTAGAAAT
ACTACTGCTTAAGGCACGGATGGAGGGGAAGGCGCGCCCGGAGATTTTAG
ACACGTTCAACCAGCAACGGAGCTCATGAAAGCCGTCATGTCCAAGGATA
ATGAAACCATGCAGAAATATATGGCCGATGCTGAGATACTCCAGTTGATG
GCTCGATTTCAAAAGCTTTCCCAAGAGGCAGGTATTGACCCCAGCATGTT
CCCGCCCCCGCCAGGGATGAGTGATCGGGCGTGACGAGGATGAGGAAAAA
CGGGCGGGACGGGCGACACCGGACTTCGACTGGGACGCGGCCAAGGCAGG
CGATGGAAACTTGCCCGGTGGCGTCGACCCAGAGGCGCTTCAGAAATTGA
CAAGCAGTCAGGAAATGATGGAGATAATGAGTAATCCTCGCTTGCAGATG
AATGACGACGACGACGACGAGGCCATTCCGGGCAAGATGAAAGTAGGTGA
GATCAAGGCCGAGTTGGACTTGCGTGGCGTCACCTATGCCGGCGTTTTTG
AACGATCAGATCTAGAAATACTACTGCTTAAGGCACGGATGGAGGGGAAG
GCGCGCCCGGAGATTTTAGACACGTTCAACCAGCAACGGAGCTCATGAAA
GCCGTCATGTCCAAGGATAATGAAACCATGCAGAAATATATGGCCGATGC
TGAGATACTCCAGTTGATGGCTCGATTTCAAAAGCTTTCCCAAGAGGCAG
GTATTGACCCCAGCATGTTCCCGCCCCCGCCAGGGATGAGTGATCGGGCG
TGACGAGGATGAGGAAAAACGGGCGGGACGGGCGACACCGGACTTCGACT
GGGACGCGGCCAAGGCAGGCGATGGAAACTTGCCCGGTGGCGTCGACCCA
GAGGCGCTTCAGAAATTGACAAGCAGTCAGGAAATGATGGAGATAATGAG
TAATCCTCGCTTGCAGATGAATGACGACGACGACGACGAGGCCATTCCGG
GCAAGATGAAAGTAGGTGAGATCAAGGCCGAGTTGGACTTGCGTGGCGTC
ACCTATGCCGGCGTTTTTGAACGATCAGATCTAGAAATACTACTGCTTAA
GGCACGGATGGAGGGGAAGGCGCGCCCGGAGATTTTAGACACGTTCAACC
AGCAACG
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Synonyms
Publications