jgi.p|Nanoce1779_2|586652, mRNA_4131 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586652
Unique NamemRNA_4131
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1156
Alignment locationscaffold_8:906004..907159 +

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Properties
Property NameValue
TranscriptId586738
TrackFilteredModels2
ProteinId586652
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:906004..907159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586652gene_4131Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586652mRNA_4131-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4131CDS_4131Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4131 ID=mRNA_4131|Name=jgi.p|Nanoce1779_2|586652|organism=Nannochloropsis oceanica|type=mRNA|length=1156bp
AACAGAAGAACAAGAAGGACAGTAGCAGCACCAAGCGCAAAAGTGCGGAC
ATGGAGGAGGAGGAGGAGGAGGAGGTGGAGGGACTAAAGGAAGATGAAGG
GCAGGGTGAGGAGGAAAAGAAGCAACAGAAGGCGACGACGCCGGCCAAGA
CATTGAGGGTGGCGACATCGAGCAGCAGCAACAGTAGCAGCAGAAATTGC
AGCCGGAGCCCAAGCCCTACGGTCACTCTCAATACTCCTACTGCTGCTGC
TGCTACCATCGTCGTCAACAGTACCAGCAACAATGCTGTCAGCAACAGCG
CACAGAAAAAGAAGCGTATCCGTCCTACTCCTGTACGAGGGGCGGGGAGT
GCCGCTGAAGATGCCTTTGCTGCTGCTGCTGCTTCTGGTGCTGTCGTTGG
TGGTGGAGAAATAATAGGAGGAGAAGAAGGAAGAGAACAGAACGAGATAA
AGATGAGTGGGATGGAAGAGCGCAGTAATAGTGCCTCAGCTGTTGCTCTT
TCTTCTGCTGCTCCTACACATCGAGCGGTAGCAACAGCGGGAGGGAAACC
GGCGAAGAAACGGCTGGCTCCTACGCTTGTAAAGCCGTCTTTAAATTAAA
ATTGAGCTGAGAGAACAAAGGCAGGAAAGGAGGTAGATTGATCTGTGAGT
GTGTCTGTGAGAGAGAGAGAGAGAGAGAAAGAGATGTACTGTGCCAGTGC
GTGCATCCGGCCAGAGTGAAGACGAGCGAAACGTTTGGTGGGATCGAAAG
AATGGAGGGACGGGAGTGATTGGAAATATGACAGCAATCACGACTGCCGG
GATAGCAAGCTAAGAAAGCATCCCGTGTGTACGGACGAGGGGGGGCAGTA
CCAGGAGCTGTAGTAGCAGGAAAGACGACGATGACGAAGGAGAAAAGGGA
GGATGGGGAGCAGGAGGAGGAGGAGTAGTAGATGTAGCAGTAGAGGGACA
AGGAGAATGGCGCGAACGAAGAAAAGTGGCAGACAATAGTAAGTAGTGGA
AATAAAGGGAGAAGAAAAAGAAGAAGAAAAGGAAAAAGAAGAAGAGGAAA
ACCAGGACAAGGAAAAGGGGAGGAGAGGCAAAAACAGAAAATGCGCATCA
TGAGCAACCAAGTAATGGAATAAAAGCAAAATACCAGCAAGAGGAGAGGT
TTCGGC
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protein sequence of jgi.p|Nanoce1779_2|586652

>mRNA_4131-protein ID=mRNA_4131-protein|Name=jgi.p|Nanoce1779_2|586652|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MEEEEEEEVEGLKEDEGQGEEEKKQQKATTPAKTLRVATSSSSNSSSRNC
SRSPSPTVTLNTPTAAAATIVVNSTSNNAVSNSAQKKKRIRPTPVRGAGS
AAEDAFAAAAASGAVVGGGEIIGGEEGREQNEIKMSGMEERSNSASAVAL
SSAAPTHRAVATAGGKPAKKRLAPTLVKPSLN*
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mRNA from alignment at scaffold_8:906004..907159+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4131 ID=mRNA_4131|Name=jgi.p|Nanoce1779_2|586652|organism=Nannochloropsis oceanica|type=mRNA|length=1156bp|location=Sequence derived from alignment at scaffold_8:906004..907159+ (Nannochloropsis oceanica)
AACAGAAGAACAAGAAGGACAGTAGCAGCACCAAGCGCAAAAGTGCGGAC
ATGGAGGAGGAGGAGGAGGAGGAGGTGGAGGGACTAAAGGAAGATGAAGG
GCAGGGTGAGGAGGAAAAGAAGCAACAGAAGGCGACGACGCCGGCCAAGA
CATTGAGGGTGGCGACATCGAGCAGCAGCAACAGTAGCAGCAGAAATTGC
AGCCGGAGCCCAAGCCCTACGGTCACTCTCAATACTCCTACTGCTGCTGC
TGCTACCATCGTCGTCAACAGTACCAGCAACAATGCTGTCAGCAACAGCG
CACAGAAAAAGAAGCGTATCCGTCCTACTCCTGTACGAGGGGCGGGGAGT
GCCGCTGAAGATGCCTTTGCTGCTGCTGCTGCTTCTGGTGCTGTCGTTGG
TGGTGGAGAAATAATAGGAGGAGAAGAAGGAAGAGAACAGAACGAGATAA
AGATGAGTGGGATGGAAGAGCGCAGTAATAGTGCCTCAGCTGTTGCTCTT
TCTTCTGCTGCTCCTACACATCGAGCGGTAGCAACAGCGGGAGGGAAACC
GGCGAAGAAACGGCTGGCTCCTACGCTTGTAAAGCCGTCTTTAAATTAAA
ATTGAGCTGAGAGAACAAAGGCAGGAAAGGAGGTAGATTGATCTGTGAGT
GTGTCTGTGAGAGAGAGAGAGAGAGAGAAAGAGATGTACTGTGCCAGTGC
GTGCATCCGGCCAGAGTGAAGACGAGCGAAACGTTTGGTGGGATCGAAAG
AATGGAGGGACGGGAGTGATTGGAAATATGACAGCAATCACGACTGCCGG
GATAGCAAGCTAAGAAAGCATCCCGTGTGTACGGACGAGGGGGGGCAGTA
CCAGGAGCTGTAGTAGCAGGAAAGACGACGATGACGAAGGAGAAAAGGGA
GGATGGGGAGCAGGAGGAGGAGGAGTAGTAGATGTAGCAGTAGAGGGACA
AGGAGAATGGCGCGAACGAAGAAAAGTGGCAGACAATAGTAAGTAGTGGA
AATAAAGGGAGAAGAAAAAGAAGAAGAAAAGGAAAAAGAAGAAGAGGAAA
ACCAGGACAAGGAAAAGGGGAGGAGAGGCAAAAACAGAAAATGCGCATCA
TGAGCAACCAAGTAATGGAATAAAAGCAAAATACCAGCAAGAGGAGAGGT
TTCGGC
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Coding sequence (CDS) from alignment at scaffold_8:906004..907159+

>mRNA_4131 ID=mRNA_4131|Name=jgi.p|Nanoce1779_2|586652|organism=Nannochloropsis oceanica|type=CDS|length=549bp|location=Sequence derived from alignment at scaffold_8:906004..907159+ (Nannochloropsis oceanica)
ATGGAGGAGGAGGAGGAGGAGGAGGTGGAGGGACTAAAGGAAGATGAAGG
GCAGGGTGAGGAGGAAAAGAAGCAACAGAAGGCGACGACGCCGGCCAAGA
CATTGAGGGTGGCGACATCGAGCAGCAGCAACAGTAGCAGCAGAAATTGC
AGCCGGAGCCCAAGCCCTACGGTCACTCTCAATACTCCTACTGCTGCTGC
TGCTACCATCGTCGTCAACAGTACCAGCAACAATGCTGTCAGCAACAGCG
CACAGAAAAAGAAGCGTATCCGTCCTACTCCTGTACGAGGGGCGGGGAGT
GCCGCTGAAGATGCCTTTGCTGCTGCTGCTGCTTCTGGTGCTGTCGTTGG
TGGTGGAGAAATAATAGGAGGAGAAGAAGGAAGAGAACAGAACGAGATAA
AGATGAGTGGGATGGAAGAGCGCAGTAATAGTGCCTCAGCTGTTGCTCTT
TCTTCTGCTGCTCCTACACATCGAGCGGTAGCAACAGCGGGAGGGAAACC
GGCGAAGAAACGGCTGGCTCCTACGCTTGTAAAGCCGTCTTTAAATTAA
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Synonyms
Publications