jgi.p|Nanoce1779_2|586644, mRNA_4129 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586644
Unique NamemRNA_4129
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length723
Alignment locationscaffold_8:900673..902505 -

Link to JBrowse

Properties
Property NameValue
TranscriptId586730
TrackFilteredModels2
ProteinId586644
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:900673..902505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586644gene_4129Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586644mRNA_4129-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4129CDS_4129Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4129 ID=mRNA_4129|Name=jgi.p|Nanoce1779_2|586644|organism=Nannochloropsis oceanica|type=mRNA|length=723bp
ACAGTAAATCTCAACCATGAGCCGCACCGCCCCCCTCTCTTTCATCCGGT
CCATCGCCCTGCTCCTTGGGCTTCTCGTCTTCCTCTTTGTGACCCCCTCT
ACGGACGCCCTGTTTAGCAAGCTGGCCAAAAAAAGGACACCTGTACAAGA
GGAGCAGGCGCCGGAGCAGAAACCGGAATACACGGGCAAAGAGAGTGCAA
ATATGGGACTTCAGGCCTTCCAGGACCTTTTCAACAACCCCAACGCCATG
AAAGAGCTGTTGAAGTTGCAGGAAGACCCGGAGTTTATGCATGAGGTGGA
AGAGCTGATGGATGACCCTGAATTCCAGCAACAAGTCGACGAGTACTTGA
AGAACCCGTCCACAAAAATGGGGCTGGGCACCCTGGCCTCGGCCATGTCA
AATCCCGCGGATGTGCTGGAGACCATGGACATGCTCAATGACCCGGAGTT
TGCAAAGGAGGTGGAGGAGCTGATGGCCGACCCCTCGTTTCAGGAGGAAA
TGAAGAAGATGGCCGAGACGCCTCTATTCGCCGAAGTCATTGAAAAGGCC
AAAATCATGGCGGACGAGCTTCAAAAAGACCCGGCGGAGGTGGAGAAGTT
CTTGCAGAACGTAAGGGAAGAGATGGGCAAGTCACCTGAGTCGGCAGAGG
GGCTGCTGGCGGGCGGCGGGAAAGACGAGCTTTAGAGAAGAAATGGAGGG
ATGGAGGGAGGGAAGGAGGGAGG
back to top

protein sequence of jgi.p|Nanoce1779_2|586644

>mRNA_4129-protein ID=mRNA_4129-protein|Name=jgi.p|Nanoce1779_2|586644|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MSRTAPLSFIRSIALLLGLLVFLFVTPSTDALFSKLAKKRTPVQEEQAPE
QKPEYTGKESANMGLQAFQDLFNNPNAMKELLKLQEDPEFMHEVEELMDD
PEFQQQVDEYLKNPSTKMGLGTLASAMSNPADVLETMDMLNDPEFAKEVE
ELMADPSFQEEMKKMAETPLFAEVIEKAKIMADELQKDPAEVEKFLQNVR
EEMGKSPESAEGLLAGGGKDEL*
back to top

mRNA from alignment at scaffold_8:900673..902505-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4129 ID=mRNA_4129|Name=jgi.p|Nanoce1779_2|586644|organism=Nannochloropsis oceanica|type=mRNA|length=1833bp|location=Sequence derived from alignment at scaffold_8:900673..902505- (Nannochloropsis oceanica)
ACAGTAAATCTCAACCATGAGCCGCACCGCCCCCCTCTCTTTCATCCGGT
CCATCGCCCTGCTCCTTGGGCTTCTCGTCTTCCTCTTTGTGACCCCCTCT
ACGGACGCCCTGTTTAGCAAGCTGGCCAAAAAAAGGACACCTGTACAAGA
GGAGCAGGCGCCGGAGCAGAAACCGGAATACACGGGCAAAGAGAGTGCAA
ATATGGGACTTCAGGCCTTCCAGGACCTTTGTACGTAACGATGATTGATG
ATGAGATTTATTTGTCTTGTGCATGATCGATCCTTGTAATGTGACGGGCG
AAGGTGACGGTTACGAATGTGTGTATAATGTGCAGATAACGACTCATGGA
GTGCTTTGCGCAAGAAGAAGTTTGATGCTTGTCCCTTGATCTGTGATGGA
GCCATCGCATCCACAACTTTTCCTACTTCCCACACTCCATCCATGCTGCC
TCCTGTCTCCAATCCGGCCCTGAAAAATGCGCGCTGCTGTGACCCCTATG
CTTACCTCTCTTCCTCCATTCCTCCCTCCCTATCTTTCTGTTCCTCGCAG
TCAACAACCCCAACGCCATGAAAGAGCTGTTGAAGTTGCAGGAAGACCCG
GAGTTTATGCATGAGGTGGAAGAGCTGATGGATGACCCTGAATTCCAGCA
ACAAGTCGACGAGTAAGTCCTCCCTTTCCCTACTTCCTTCCTTGTCCTCG
TTTCCTCCCTTTTGCCTTGCTTCTTCTTCCCTCCTCCCTGCCCTCTCTCC
CTCCTTTCCTGCCCCTCCCTCCCTCCTTCCCTGCCCCTCCTTTCCTCTAG
CCCCCCCCCTTCCCAAGGTTTTTGAAAAATCCGTCGACAAAGATGCCACT
GGGTACTTTGACATGCGTTCGTCATTGAGTCGCTCAACCCCTCTTCCCTT
CCCTCCCTTCCTCCCTCCCCCCCGAAGGTACTTGAAGAACCCGTCCACAA
AAATGGGGCTGGGCACCCTGGCCTCGGCCATGTCAAATCCCGCGGATGTG
CTGGAGACCATGGACATGCTCAATGACCCGGAGTTTGCAAAGGAGGTGGA
GGAGCTGGTACGTGTGTTGGGGGGGATTGGCGTGTATGAGACAAGATAAT
TGTGTGAGATGACTGTGAAGGTATAATCGCATTACCGTGAGGGATTGGCG
CGTGTACTGGGATTAGTGTGTGAGATGAGTGTGTGGGATTACCGCCTGGG
ATAACCGAGTGTGACGGGACTGGGGTGTGTGTGTGCAATCACATGTGGGG
ATAACGTGTGTGACCGATGTCCATCCGTCTGTCTGTCTGATCCAACTAAT
TACTCTTTCCATTTTCCTCCTTTAACACCACCAACCCCCACTCCTTCCCT
CTTCTACTCCCTCCTTCCTTTCCTCCCTCCTCAGATGGCCGACCCCTCGT
TTCAGGAGGAAATGAAGAAGATGGCCGAGACGCCTCTATTCGCCGAAGTC
ATTGAAAAGGCCAAAATCATGGCGGTAGGCCCTCCCTCCTTTCCTCGCTC
CCTTCCTCCCTTTCTCCCTCTTTCCATCGATTGTACGGCTTACCCCTCCC
TCCTTCCCCCCCCCCCCCCCCCCCTCCTCAAACAAAAGGAACATCTTCCT
CACGGACATGCATGAGGCTGCAACAACAAACCGCCTCTCACCCCCTCCTC
TCTCCCCCCCTCCCTAAACCAGGACGAGCTTCAAAAAGACCCGGCGGAGG
TGGAGAAGTTCTTGCAGAACGTAAGGGAAGAGATGGGCAAGTCACCTGAG
TCGGCAGAGGGGCTGCTGGCGGGCGGCGGGAAAGACGAGCTTTAGAGAAG
AAATGGAGGGATGGAGGGAGGGAAGGAGGGAGG
back to top

Coding sequence (CDS) from alignment at scaffold_8:900673..902505-

>mRNA_4129 ID=mRNA_4129|Name=jgi.p|Nanoce1779_2|586644|organism=Nannochloropsis oceanica|type=CDS|length=3345bp|location=Sequence derived from alignment at scaffold_8:900673..902505- (Nannochloropsis oceanica)
GACGAGCTTCAAAAAGACCCGGCGGAGGTGGAGAAGTTCTTGCAGAACGT
AAGGGAAGAGATGGGCAAGTCACCTGAGTCGGCAGAGGGGCTGCTGGCGG
GCGGCGGGAAAGACGAGCTTTAGATGGCCGACCCCTCGTTTCAGGAGGAA
ATGAAGAAGATGGCCGAGACGCCTCTATTCGCCGAAGTCATTGAAAAGGC
CAAAATCATGGCGGTACTTGAAGAACCCGTCCACAAAAATGGGGCTGGGC
ACCCTGGCCTCGGCCATGTCAAATCCCGCGGATGTGCTGGAGACCATGGA
CATGCTCAATGACCCGGAGTTTGCAAAGGAGGTGGAGGAGCTGTCAACAA
CCCCAACGCCATGAAAGAGCTGTTGAAGTTGCAGGAAGACCCGGAGTTTA
TGCATGAGGTGGAAGAGCTGATGGATGACCCTGAATTCCAGCAACAAGTC
GACGAATGAGCCGCACCGCCCCCCTCTCTTTCATCCGGTCCATCGCCCTG
CTCCTTGGGCTTCTCGTCTTCCTCTTTGTGACCCCCTCTACGGACGCCCT
GTTTAGCAAGCTGGCCAAAAAAAGGACACCTGTACAAGAGGAGCAGGCGC
CGGAGCAGAAACCGGAATACACGGGCAAAGAGAGTGCAAATATGGGACTT
CAGGCCTTCCAGGACCTTTGACGAGCTTCAAAAAGACCCGGCGGAGGTGG
AGAAGTTCTTGCAGAACGTAAGGGAAGAGATGGGCAAGTCACCTGAGTCG
GCAGAGGGGCTGCTGGCGGGCGGCGGGAAAGACGAGCTTTAGATGGCCGA
CCCCTCGTTTCAGGAGGAAATGAAGAAGATGGCCGAGACGCCTCTATTCG
CCGAAGTCATTGAAAAGGCCAAAATCATGGCGGTACTTGAAGAACCCGTC
CACAAAAATGGGGCTGGGCACCCTGGCCTCGGCCATGTCAAATCCCGCGG
ATGTGCTGGAGACCATGGACATGCTCAATGACCCGGAGTTTGCAAAGGAG
GTGGAGGAGCTGTCAACAACCCCAACGCCATGAAAGAGCTGTTGAAGTTG
CAGGAAGACCCGGAGTTTATGCATGAGGTGGAAGAGCTGATGGATGACCC
TGAATTCCAGCAACAAGTCGACGAATGAGCCGCACCGCCCCCCTCTCTTT
CATCCGGTCCATCGCCCTGCTCCTTGGGCTTCTCGTCTTCCTCTTTGTGA
CCCCCTCTACGGACGCCCTGTTTAGCAAGCTGGCCAAAAAAAGGACACCT
GTACAAGAGGAGCAGGCGCCGGAGCAGAAACCGGAATACACGGGCAAAGA
GAGTGCAAATATGGGACTTCAGGCCTTCCAGGACCTTTGACGAGCTTCAA
AAAGACCCGGCGGAGGTGGAGAAGTTCTTGCAGAACGTAAGGGAAGAGAT
GGGCAAGTCACCTGAGTCGGCAGAGGGGCTGCTGGCGGGCGGCGGGAAAG
ACGAGCTTTAGATGGCCGACCCCTCGTTTCAGGAGGAAATGAAGAAGATG
GCCGAGACGCCTCTATTCGCCGAAGTCATTGAAAAGGCCAAAATCATGGC
GGTACTTGAAGAACCCGTCCACAAAAATGGGGCTGGGCACCCTGGCCTCG
GCCATGTCAAATCCCGCGGATGTGCTGGAGACCATGGACATGCTCAATGA
CCCGGAGTTTGCAAAGGAGGTGGAGGAGCTGTCAACAACCCCAACGCCAT
GAAAGAGCTGTTGAAGTTGCAGGAAGACCCGGAGTTTATGCATGAGGTGG
AAGAGCTGATGGATGACCCTGAATTCCAGCAACAAGTCGACGAATGAGCC
GCACCGCCCCCCTCTCTTTCATCCGGTCCATCGCCCTGCTCCTTGGGCTT
CTCGTCTTCCTCTTTGTGACCCCCTCTACGGACGCCCTGTTTAGCAAGCT
GGCCAAAAAAAGGACACCTGTACAAGAGGAGCAGGCGCCGGAGCAGAAAC
CGGAATACACGGGCAAAGAGAGTGCAAATATGGGACTTCAGGCCTTCCAG
GACCTTTGACGAGCTTCAAAAAGACCCGGCGGAGGTGGAGAAGTTCTTGC
AGAACGTAAGGGAAGAGATGGGCAAGTCACCTGAGTCGGCAGAGGGGCTG
CTGGCGGGCGGCGGGAAAGACGAGCTTTAGATGGCCGACCCCTCGTTTCA
GGAGGAAATGAAGAAGATGGCCGAGACGCCTCTATTCGCCGAAGTCATTG
AAAAGGCCAAAATCATGGCGGTACTTGAAGAACCCGTCCACAAAAATGGG
GCTGGGCACCCTGGCCTCGGCCATGTCAAATCCCGCGGATGTGCTGGAGA
CCATGGACATGCTCAATGACCCGGAGTTTGCAAAGGAGGTGGAGGAGCTG
TCAACAACCCCAACGCCATGAAAGAGCTGTTGAAGTTGCAGGAAGACCCG
GAGTTTATGCATGAGGTGGAAGAGCTGATGGATGACCCTGAATTCCAGCA
ACAAGTCGACGAATGAGCCGCACCGCCCCCCTCTCTTTCATCCGGTCCAT
CGCCCTGCTCCTTGGGCTTCTCGTCTTCCTCTTTGTGACCCCCTCTACGG
ACGCCCTGTTTAGCAAGCTGGCCAAAAAAAGGACACCTGTACAAGAGGAG
CAGGCGCCGGAGCAGAAACCGGAATACACGGGCAAAGAGAGTGCAAATAT
GGGACTTCAGGCCTTCCAGGACCTTTGACGAGCTTCAAAAAGACCCGGCG
GAGGTGGAGAAGTTCTTGCAGAACGTAAGGGAAGAGATGGGCAAGTCACC
TGAGTCGGCAGAGGGGCTGCTGGCGGGCGGCGGGAAAGACGAGCTTTAGA
TGGCCGACCCCTCGTTTCAGGAGGAAATGAAGAAGATGGCCGAGACGCCT
CTATTCGCCGAAGTCATTGAAAAGGCCAAAATCATGGCGGTACTTGAAGA
ACCCGTCCACAAAAATGGGGCTGGGCACCCTGGCCTCGGCCATGTCAAAT
CCCGCGGATGTGCTGGAGACCATGGACATGCTCAATGACCCGGAGTTTGC
AAAGGAGGTGGAGGAGCTGTCAACAACCCCAACGCCATGAAAGAGCTGTT
GAAGTTGCAGGAAGACCCGGAGTTTATGCATGAGGTGGAAGAGCTGATGG
ATGACCCTGAATTCCAGCAACAAGTCGACGAATGAGCCGCACCGCCCCCC
TCTCTTTCATCCGGTCCATCGCCCTGCTCCTTGGGCTTCTCGTCTTCCTC
TTTGTGACCCCCTCTACGGACGCCCTGTTTAGCAAGCTGGCCAAAAAAAG
GACACCTGTACAAGAGGAGCAGGCGCCGGAGCAGAAACCGGAATACACGG
GCAAAGAGAGTGCAAATATGGGACTTCAGGCCTTCCAGGACCTTT
back to top
Synonyms
Publications