jgi.p|Nanoce1779_2|629784, mRNA_4128 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|629784
Unique Name	mRNA_4128
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1031
Alignment location	scaffold_8:898585..900185 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	629870
Track	FilteredModels2
ProteinId	629784

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:898585..900185 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629784	gene_4128	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629784	mRNA_4128-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4128	CDS_4128	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:898585..900185+
coding sequence from alignment at scaffold_8:898585..900185+

mRNA sequence

>mRNA_4128 ID=mRNA_4128|Name=jgi.p|Nanoce1779_2|629784|organism=Nannochloropsis oceanica|type=mRNA|length=1031bp
ATGAGCGGCGGTGGTGGCGGCAGCAACAACAACCGGGTCTGTCATTTCAA
GCTGGTCCTTCTGGGGGACACGGCGGTGGGGAAGTCATGCCTGGTCGTCA
GGTTTGTCCGCGACGAGTTCTTTGAGTACCAGGAACCTACCATCGGCGCC
GCCTTTCTCACGCAAGCCGTCGTCTTGGAGGACAGCACCGTCAAGTTCGA
GATTTGGGACACTGCAGGCCAAGAGCGCTATCGTTCCCTCGCCCCTATGT
ACTATCGGGGGGCGTCCGCGGCGATTGTGGTGTACGATATCACCAATGCC
GAGAGTTTCAAAGGCGCAAAGAGCTGGGTGAAAGAGCTTCAACGCCGGGG
GGACCCGAGCGTGATCATTGCCTTGGCCGGCAACAAAGCAGATTTAGCGA
GCAGTAGGCGGAAGGTGGAATTAAAGGAGGCCCAGGAATACGCAGCGGAG
AATGGTTTGTTGCACCTTGAGACGAGTGCCAAGGACGCGCAGAATGTCAA
GGCGTTGTTTGTGGAGATCGCCAAGAGGCTGCCCAAGGCAGTGGTACCGG
TAGAGAGGGAAGCGTTCCCTATTATTGCGCCAAAGGCGACGAAGAGGGGT
TGTTGTTGAGGGAGGGAGGGAGGGCAGGAGGAAGGGGTAATTGTTGATAG
GGGGAGATGGAGAAATTTTCGTTGTTGTGGCAAGCAACGGCAGTAGCAGC
AGTAGCTATTGCAACACCAGGCTTTCCCCCAAATTATTCATTGTTTCGAT
GGATTACAGCTGGATTACAGACAGGAGGAGGGGGAGAATGAGGAGGGGGA
GGAGGAAGGAGAAAAACAAAATAAGAAGAGGAAGAAGAGGGAGAGTGGAG
AGTTTGGTGAAAGGGAGGGGTAAAGGGGTGTACATCACGGGGAGGTAGAC
GAGCAGGAGGAGCAGGAGCAAAGAGCTGAACGGGGAAAGGAGGGAGGGAA
GGTGAGACGAAGAAGGATGGTTTTGAATATAACAACGACAACATAACGTG
GAAAAGAAATAACACACCAGGGAGAGCGAAA

protein sequence of jgi.p|Nanoce1779_2|629784

>mRNA_4128-protein ID=mRNA_4128-protein|Name=jgi.p|Nanoce1779_2|629784|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MSGGGGGSNNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGA
AFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNA
ESFKGAKSWVKELQRRGDPSVIIALAGNKADLASSRRKVELKEAQEYAAE
NGLLHLETSAKDAQNVKALFVEIAKRLPKAVVPVEREAFPIIAPKATKRG
CC*

mRNA from alignment at scaffold_8:898585..900185+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4128 ID=mRNA_4128|Name=jgi.p|Nanoce1779_2|629784|organism=Nannochloropsis oceanica|type=mRNA|length=1601bp|location=Sequence derived from alignment at scaffold_8:898585..900185+ (Nannochloropsis oceanica)
ATGAGCGGCGGTGGTGGCGGCAGCAACAACAACCGGGTCTGTCATTTCAA
GCTGGTCCTTCTGGGGGACACGGCGGTGGGGAAGTCATGCCTGGTCGTCA
GGTTTGTCCGCGACGAGTTCTTTGAGTACCAGGTAAGTGAGAGGGAAAGG
AGGGAGAAAAGAGATCGCTTAAAGAGGGGAGCCTGCATATGAATCTGTGC
TTGGTTTTGTGATGGGATGACCGCGGAGTAGGTTCGTCATCGGGGTGCGT
AAGGGGGTGATGATGGATCAGCCTGTGTAAGGGACTCGTCCCGCCATGAT
CGCTACCGCGGTCATGTTCGCAGCACTTTGCACCTTTCTAGGATGCTGAC
AACATTTGAGGCGGTAGGGCCTCTTTAAGTGCGTAAGATCTGCCGTTTGA
TTTCGTGTCGCCCTTCCTCTCCCTTCCAACCTTTGTCATTCCACCTTCCC
CTCTCTCACTTGCCCTTTTCAACTCCCATCGTTACCTCTCCAGGAACCTA
CCATCGGCGCCGCCTTTCTCACGCAAGCCGTCGTCTTGGAGGACAGCACC
GTCAAGTTCGAGATTTGGGACACTGCAGGCCAAGAGCGCTATCGTTCCCT
CGCCCCTATGTACTATCGGGGGGCGTCCGCGGCGATTGTGGTGTACGATA
TCACCAATGCCGAGAGTTTCAAAGGTAAGATGTGACGGAGGAGAGGCAAG
AAGAATAACGACGACGAATGAAAATGAAATTTCTCAAGTTACTGACCGGC
CTTATTGTGGTCTCCGCACTGTCACTAAATCTAATCTAATCTGAAACTTG
GTCACTATTCCTCTGTTTGACGTACGTACTGATCCTTCCCCCCCCCCCAC
CCTCTTTCATTCTTTCCGTTGTCCCAACCGCAGGCGCAAAGAGCTGGGTG
AAAGAGCTTCAACGCCGGGGGGACCCGAGCGTGATCATTGCCTTGGCCGG
CAACAAAGCAGATTTAGCGAGCAGTAGGCGGAAGGTGGAATTAAAGGAGG
CCCAGGAATACGCAGCGGAGAATGGTTTGTTGCACCTTGAGACGAGTGCC
AAGGACGCGCAGAATGTCAAGGCGTTGTTTGTGGAGATCGCCAAGAGGCT
GCCCAAGGCAGTGGTACCGGTAGAGAGGGAAGCGTTCCCTATTATTGCGC
CAAAGGCGACGAAGAGGGGTTGTTGTTGAGGGAGGGAGGGAGGGCAGGAG
GAAGGGGTAATTGTTGATAGGGGGAGATGGAGAAATTTTCGTTGTTGTGG
CAAGCAACGGCAGTAGCAGCAGTAGCTATTGCAACACCAGGCTTTCCCCC
AAATTATTCATTGTTTCGATGGATTACAGCTGGATTACAGACAGGAGGAG
GGGGAGAATGAGGAGGGGGAGGAGGAAGGAGAAAAACAAAATAAGAAGAG
GAAGAAGAGGGAGAGTGGAGAGTTTGGTGAAAGGGAGGGGTAAAGGGGTG
TACATCACGGGGAGGTAGACGAGCAGGAGGAGCAGGAGCAAAGAGCTGAA
CGGGGAAAGGAGGGAGGGAAGGTGAGACGAAGAAGGATGGTTTTGAATAT
AACAACGACAACATAACGTGGAAAAGAAATAACACACCAGGGAGAGCGAA
A

Coding sequence (CDS) from alignment at scaffold_8:898585..900185+

>mRNA_4128 ID=mRNA_4128|Name=jgi.p|Nanoce1779_2|629784|organism=Nannochloropsis oceanica|type=CDS|length=1827bp|location=Sequence derived from alignment at scaffold_8:898585..900185+ (Nannochloropsis oceanica)
ATGAGCGGCGGTGGTGGCGGCAGCAACAACAACCGGGTCTGTCATTTCAA
GCTGGTCCTTCTGGGGGACACGGCGGTGGGGAAGTCATGCCTGGTCGTCA
GGTTTGTCCGCGACGAGTTCTTTGAGTACCAGGAACCTACCATCGGCGCC
GCCTTTCTCACGCAAGCCGTCGTCTTGGAGGACAGCACCGTCAAGTTCGA
GATTTGGGACACTGCAGGCCAAGAGCGCTATCGTTCCCTCGCCCCTATGT
ACTATCGGGGGGCGTCCGCGGCGATTGTGGTGTACGATATCACCAATGCC
GAGAGTTTCAAAGGCGCAAAGAGCTGGGTGAAAGAGCTTCAACGCCGGGG
GGACCCGAGCGTGATCATTGCCTTGGCCGGCAACAAAGCAGATTTAGCGA
GCAGTAGGCGGAAGGTGGAATTAAAGGAGGCCCAGGAATACGCAGCGGAG
AATGGTTTGTTGCACCTTGAGACGAGTGCCAAGGACGCGCAGAATGTCAA
GGCGTTGTTTGTGGAGATCGCCAAGAGGCTGCCCAAGGCAGTGGTACCGG
TAGAGAGGGAAGCGTTCCCTATTATTGCGCCAAAGGCGACGAAGAGGGGT
TGTTGTTGAATGAGCGGCGGTGGTGGCGGCAGCAACAACAACCGGGTCTG
TCATTTCAAGCTGGTCCTTCTGGGGGACACGGCGGTGGGGAAGTCATGCC
TGGTCGTCAGGTTTGTCCGCGACGAGTTCTTTGAGTACCAGGAACCTACC
ATCGGCGCCGCCTTTCTCACGCAAGCCGTCGTCTTGGAGGACAGCACCGT
CAAGTTCGAGATTTGGGACACTGCAGGCCAAGAGCGCTATCGTTCCCTCG
CCCCTATGTACTATCGGGGGGCGTCCGCGGCGATTGTGGTGTACGATATC
ACCAATGCCGAGAGTTTCAAAGGCGCAAAGAGCTGGGTGAAAGAGCTTCA
ACGCCGGGGGGACCCGAGCGTGATCATTGCCTTGGCCGGCAACAAAGCAG
ATTTAGCGAGCAGTAGGCGGAAGGTGGAATTAAAGGAGGCCCAGGAATAC
GCAGCGGAGAATGGTTTGTTGCACCTTGAGACGAGTGCCAAGGACGCGCA
GAATGTCAAGGCGTTGTTTGTGGAGATCGCCAAGAGGCTGCCCAAGGCAG
TGGTACCGGTAGAGAGGGAAGCGTTCCCTATTATTGCGCCAAAGGCGACG
AAGAGGGGTTGTTGTTGAATGAGCGGCGGTGGTGGCGGCAGCAACAACAA
CCGGGTCTGTCATTTCAAGCTGGTCCTTCTGGGGGACACGGCGGTGGGGA
AGTCATGCCTGGTCGTCAGGTTTGTCCGCGACGAGTTCTTTGAGTACCAG
GAACCTACCATCGGCGCCGCCTTTCTCACGCAAGCCGTCGTCTTGGAGGA
CAGCACCGTCAAGTTCGAGATTTGGGACACTGCAGGCCAAGAGCGCTATC
GTTCCCTCGCCCCTATGTACTATCGGGGGGCGTCCGCGGCGATTGTGGTG
TACGATATCACCAATGCCGAGAGTTTCAAAGGCGCAAAGAGCTGGGTGAA
AGAGCTTCAACGCCGGGGGGACCCGAGCGTGATCATTGCCTTGGCCGGCA
ACAAAGCAGATTTAGCGAGCAGTAGGCGGAAGGTGGAATTAAAGGAGGCC
CAGGAATACGCAGCGGAGAATGGTTTGTTGCACCTTGAGACGAGTGCCAA
GGACGCGCAGAATGTCAAGGCGTTGTTTGTGGAGATCGCCAAGAGGCTGC
CCAAGGCAGTGGTACCGGTAGAGAGGGAAGCGTTCCCTATTATTGCGCCA
AAGGCGACGAAGAGGGGTTGTTGTTGA

Synonyms

Publications