jgi.p|Nanoce1779_2|425071, mRNA_4127 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|425071
Unique NamemRNA_4127
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1261
Alignment locationscaffold_8:897496..898756 +

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Properties
Property NameValue
TranscriptId425157
TrackFilteredModels2
ProteinId425071
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:897496..898756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|425071gene_4127Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|425071mRNA_4127-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4127CDS_4127Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4127 ID=mRNA_4127|Name=jgi.p|Nanoce1779_2|425071|organism=Nannochloropsis oceanica|type=mRNA|length=1261bp
TCCCTTTTGAACTTGCATCACCGACTTGACTCGCTCAAACACCTGTCTCG
AAGGACTCTGCAACAAACCAGCCCAAGCCCCTGCCGCAGTCATTTCCCCC
AAAGTTAAATCCCGCTCCGTGTTTCCTTCGCGGAAGAACCGCGTCCCTTG
CCCATAACCGGCAAAGGAGATGGCGAACGTCACCCCAAACCCGGCTTGAG
GGCTAAGAAGACCACGATAGAGCGAGCCGATGCCTCCCTCGCGGACCATG
GAGCGTATCACGTCCAGCGGGCCTTTGTAATGCGGATAAGCTTGTTGCCG
GACCTTGGCAGTGTCGAGGGGGAAGATCAAGGTGATGCCAAAGACACCGC
CCACCGTACCTTGGTAGTGAGTAAGGGAGTGGGCGAAGGGTGTGGGGGAG
ACGGGTCTTTACAGAAAAGTACAAGGGACGAGAGCTTACGTCACCTTTGG
GACAAGAAAGAAAATCCTCATGTCTGCCAGGCTTGTGATAACTTGATTTG
CATAATAGCACATTTCTATCCACACACTCGTGGGATAACAGTACATCGAT
CTTCACGTCGGGAAATTGTACACATAAGCTTTACTTACCCGCCAAGAGCT
CGTGCAGAAAGGGATTGCCCCCCATTGCACCGTCTATGTCCTCGGAATTA
TAGCCGTGGTCGTCTTGGACTGCTTCGTTTCGTTGTGCTTGACCTGCGTA
GGGTGGACTGGGGCGTCAAAGTCGAGGCAAGGAGAAGTATCGGGCTCCCG
GAGGGCCTGCTGGCCATTTTGGCGATGGTGGCGCCGTTCAAAGCCAAGTT
GGCTTTGCTTTCCCCAAGACCGCACTCACAACAACACCAGCACACGCTGG
CATGCACCCTGCCACACATCGCTAGCTTCCCTAGCTCCCCGAGCCATGTA
TCAGAGCCTGAAAGACACGAGTGCGCGCGGCATTAGCTGCTTCCCCGGAC
TGCGAGGAGCGAAGCGGTGTCTGCTTCTTTAATTTATGCACCACAGCGCT
ATATTTCACCCTCCACCCTCCTCCATGCGCTGCACAGCCACAAGTGCAGG
CACAGCCACAGGCACAGTAACAGCTTTTACTAAAGTATCATGAGCGGCGG
TGGTGGCGGCAGCAACAACAACCGGGTCTGTCATTTCAAGCTGGTCCTTC
TGGGGGACACGGCGGTGGGGAAGTCATGCCTGGTCGTCAGGTTTGTCCGC
GACGAGTTCTTTGAGTACCAGGTAAGTGAGAGGGAAAGGAGGGAGAAAAG
AGATCGCTTAA
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protein sequence of jgi.p|Nanoce1779_2|425071

>mRNA_4127-protein ID=mRNA_4127-protein|Name=jgi.p|Nanoce1779_2|425071|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MRISLLPDLGSVEGEDQGDAKDTAHRTLVVSKGVGEGCGGDGSLQKSTRD
ESLRHLWDKKENPHVCQACDNLICIIAHFYPHTRGITVHRSSRREIVHIS
FTYPPRARAERDCPPLHRLCPRNYSRGRLGLLRFVVLDLRRVDWGVKVEA
RRSIGLPEGLLAILAMVAPFKAKLALLSPRPHSQQHQHTLACTLPHIASF
PSSPSHVSEPERHECARH*
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mRNA from alignment at scaffold_8:897496..898756+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4127 ID=mRNA_4127|Name=jgi.p|Nanoce1779_2|425071|organism=Nannochloropsis oceanica|type=mRNA|length=1261bp|location=Sequence derived from alignment at scaffold_8:897496..898756+ (Nannochloropsis oceanica)
TCCCTTTTGAACTTGCATCACCGACTTGACTCGCTCAAACACCTGTCTCG
AAGGACTCTGCAACAAACCAGCCCAAGCCCCTGCCGCAGTCATTTCCCCC
AAAGTTAAATCCCGCTCCGTGTTTCCTTCGCGGAAGAACCGCGTCCCTTG
CCCATAACCGGCAAAGGAGATGGCGAACGTCACCCCAAACCCGGCTTGAG
GGCTAAGAAGACCACGATAGAGCGAGCCGATGCCTCCCTCGCGGACCATG
GAGCGTATCACGTCCAGCGGGCCTTTGTAATGCGGATAAGCTTGTTGCCG
GACCTTGGCAGTGTCGAGGGGGAAGATCAAGGTGATGCCAAAGACACCGC
CCACCGTACCTTGGTAGTGAGTAAGGGAGTGGGCGAAGGGTGTGGGGGAG
ACGGGTCTTTACAGAAAAGTACAAGGGACGAGAGCTTACGTCACCTTTGG
GACAAGAAAGAAAATCCTCATGTCTGCCAGGCTTGTGATAACTTGATTTG
CATAATAGCACATTTCTATCCACACACTCGTGGGATAACAGTACATCGAT
CTTCACGTCGGGAAATTGTACACATAAGCTTTACTTACCCGCCAAGAGCT
CGTGCAGAAAGGGATTGCCCCCCATTGCACCGTCTATGTCCTCGGAATTA
TAGCCGTGGTCGTCTTGGACTGCTTCGTTTCGTTGTGCTTGACCTGCGTA
GGGTGGACTGGGGCGTCAAAGTCGAGGCAAGGAGAAGTATCGGGCTCCCG
GAGGGCCTGCTGGCCATTTTGGCGATGGTGGCGCCGTTCAAAGCCAAGTT
GGCTTTGCTTTCCCCAAGACCGCACTCACAACAACACCAGCACACGCTGG
CATGCACCCTGCCACACATCGCTAGCTTCCCTAGCTCCCCGAGCCATGTA
TCAGAGCCTGAAAGACACGAGTGCGCGCGGCATTAGCTGCTTCCCCGGAC
TGCGAGGAGCGAAGCGGTGTCTGCTTCTTTAATTTATGCACCACAGCGCT
ATATTTCACCCTCCACCCTCCTCCATGCGCTGCACAGCCACAAGTGCAGG
CACAGCCACAGGCACAGTAACAGCTTTTACTAAAGTATCATGAGCGGCGG
TGGTGGCGGCAGCAACAACAACCGGGTCTGTCATTTCAAGCTGGTCCTTC
TGGGGGACACGGCGGTGGGGAAGTCATGCCTGGTCGTCAGGTTTGTCCGC
GACGAGTTCTTTGAGTACCAGGTAAGTGAGAGGGAAAGGAGGGAGAAAAG
AGATCGCTTAA
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Coding sequence (CDS) from alignment at scaffold_8:897496..898756+

>mRNA_4127 ID=mRNA_4127|Name=jgi.p|Nanoce1779_2|425071|organism=Nannochloropsis oceanica|type=CDS|length=657bp|location=Sequence derived from alignment at scaffold_8:897496..898756+ (Nannochloropsis oceanica)
ATGCGGATAAGCTTGTTGCCGGACCTTGGCAGTGTCGAGGGGGAAGATCA
AGGTGATGCCAAAGACACCGCCCACCGTACCTTGGTAGTGAGTAAGGGAG
TGGGCGAAGGGTGTGGGGGAGACGGGTCTTTACAGAAAAGTACAAGGGAC
GAGAGCTTACGTCACCTTTGGGACAAGAAAGAAAATCCTCATGTCTGCCA
GGCTTGTGATAACTTGATTTGCATAATAGCACATTTCTATCCACACACTC
GTGGGATAACAGTACATCGATCTTCACGTCGGGAAATTGTACACATAAGC
TTTACTTACCCGCCAAGAGCTCGTGCAGAAAGGGATTGCCCCCCATTGCA
CCGTCTATGTCCTCGGAATTATAGCCGTGGTCGTCTTGGACTGCTTCGTT
TCGTTGTGCTTGACCTGCGTAGGGTGGACTGGGGCGTCAAAGTCGAGGCA
AGGAGAAGTATCGGGCTCCCGGAGGGCCTGCTGGCCATTTTGGCGATGGT
GGCGCCGTTCAAAGCCAAGTTGGCTTTGCTTTCCCCAAGACCGCACTCAC
AACAACACCAGCACACGCTGGCATGCACCCTGCCACACATCGCTAGCTTC
CCTAGCTCCCCGAGCCATGTATCAGAGCCTGAAAGACACGAGTGCGCGCG
GCATTAG
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Synonyms
Publications