jgi.p|Nanoce1779_2|586621, mRNA_4122 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586621
Unique NamemRNA_4122
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length912
Alignment locationscaffold_8:886016..886927 -

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Properties
Property NameValue
TranscriptId586707
TrackFilteredModels2
ProteinId586621
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:886016..886927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586621gene_4122Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586621mRNA_4122-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4122CDS_4122Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4122 ID=mRNA_4122|Name=jgi.p|Nanoce1779_2|586621|organism=Nannochloropsis oceanica|type=mRNA|length=912bp
TCAGGAAGCTTGACGCTCCAATTGGGCTTCAAAAAGGAGGCGTGGACAGG
AGGTAGAGGAATGAGCGCCGGCGTCCGTCGCCGACATCATCTCCCGGTCA
CGTTGAGTGATCGGACCGCACTCTGTCTCTCAAGCACAAAGCAGCAAATG
GCAAGTGCCCTCCGAGCCCAACCGCACCCTGGAGATCATACACATGCCGC
AGGTGTGCCAGGCTGGTTGATTGTTTTAACTGCGACGGCATCCATTTTCA
TCATATCAGAGGACCTGCCAAAATCCAGCAGTAGCATCGTCATGTCCCAT
GCTTTCACCCATGTGACACACGTCACCTATCAAACACAGGGGGACCTAGT
CATGCATGCCCTCACGTCTACGATACCTGCCTTGGGTGTTAGAAGGAACC
TGGCGCAGCATTTGCTCAAGAAGCGTCCACTGCTGATGGGAGGAGGCGGA
GGAGCAGGTGGAGACTCAGGACTCCTGCATAACTCTCATAGCTTTCACAG
CTCGGCGCCTTCGCTGGGAGGCGGCACACCGGGGGAATGGAATCACGGTG
AGTGTTCATTTTAAGATGAGATGTGGGTGATTTGTAGGTGCAGATTGGGA
GGTGCGTTGGATAGAAGAGGAAAGGAGAGAAAAGCGGAGTAAAGGAGGAG
GCATCGGCGTTCCAGGAGGCGTTTTTAGGATTTTGATAAATCAGCGGAAT
CCATTCATTGCCCCCCTGTGTCTTTTCCCATATTTCCTTTCTCTGCATGT
GTCTAAAGAATGAGATCAAGCAGCGCCTGAATACCATGAAGGAAGGCGGG
GAGAGAGCATGGCAATATTAGCAATAGCAATCCCACATTATCCACATTTG
CTCATCTTTTCCTTCCCCCTCCCTCTGTGCTTACCCTCAGTCTGGAACTG
GAAGATCAAGAA
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protein sequence of jgi.p|Nanoce1779_2|586621

>mRNA_4122-protein ID=mRNA_4122-protein|Name=jgi.p|Nanoce1779_2|586621|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MSAGVRRRHHLPVTLSDRTALCLSSTKQQMASALRAQPHPGDHTHAAGVP
GWLIVLTATASIFIISEDLPKSSSSIVMSHAFTHVTHVTYQTQGDLVMHA
LTSTIPALGVRRNLAQHLLKKRPLLMGGGGGAGGDSGLLHNSHSFHSSAP
SLGGGTPGEWNHGECSF*
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mRNA from alignment at scaffold_8:886016..886927-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4122 ID=mRNA_4122|Name=jgi.p|Nanoce1779_2|586621|organism=Nannochloropsis oceanica|type=mRNA|length=912bp|location=Sequence derived from alignment at scaffold_8:886016..886927- (Nannochloropsis oceanica)
TCAGGAAGCTTGACGCTCCAATTGGGCTTCAAAAAGGAGGCGTGGACAGG
AGGTAGAGGAATGAGCGCCGGCGTCCGTCGCCGACATCATCTCCCGGTCA
CGTTGAGTGATCGGACCGCACTCTGTCTCTCAAGCACAAAGCAGCAAATG
GCAAGTGCCCTCCGAGCCCAACCGCACCCTGGAGATCATACACATGCCGC
AGGTGTGCCAGGCTGGTTGATTGTTTTAACTGCGACGGCATCCATTTTCA
TCATATCAGAGGACCTGCCAAAATCCAGCAGTAGCATCGTCATGTCCCAT
GCTTTCACCCATGTGACACACGTCACCTATCAAACACAGGGGGACCTAGT
CATGCATGCCCTCACGTCTACGATACCTGCCTTGGGTGTTAGAAGGAACC
TGGCGCAGCATTTGCTCAAGAAGCGTCCACTGCTGATGGGAGGAGGCGGA
GGAGCAGGTGGAGACTCAGGACTCCTGCATAACTCTCATAGCTTTCACAG
CTCGGCGCCTTCGCTGGGAGGCGGCACACCGGGGGAATGGAATCACGGTG
AGTGTTCATTTTAAGATGAGATGTGGGTGATTTGTAGGTGCAGATTGGGA
GGTGCGTTGGATAGAAGAGGAAAGGAGAGAAAAGCGGAGTAAAGGAGGAG
GCATCGGCGTTCCAGGAGGCGTTTTTAGGATTTTGATAAATCAGCGGAAT
CCATTCATTGCCCCCCTGTGTCTTTTCCCATATTTCCTTTCTCTGCATGT
GTCTAAAGAATGAGATCAAGCAGCGCCTGAATACCATGAAGGAAGGCGGG
GAGAGAGCATGGCAATATTAGCAATAGCAATCCCACATTATCCACATTTG
CTCATCTTTTCCTTCCCCCTCCCTCTGTGCTTACCCTCAGTCTGGAACTG
GAAGATCAAGAA
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Coding sequence (CDS) from alignment at scaffold_8:886016..886927-

>mRNA_4122 ID=mRNA_4122|Name=jgi.p|Nanoce1779_2|586621|organism=Nannochloropsis oceanica|type=CDS|length=504bp|location=Sequence derived from alignment at scaffold_8:886016..886927- (Nannochloropsis oceanica)
ATGAGCGCCGGCGTCCGTCGCCGACATCATCTCCCGGTCACGTTGAGTGA
TCGGACCGCACTCTGTCTCTCAAGCACAAAGCAGCAAATGGCAAGTGCCC
TCCGAGCCCAACCGCACCCTGGAGATCATACACATGCCGCAGGTGTGCCA
GGCTGGTTGATTGTTTTAACTGCGACGGCATCCATTTTCATCATATCAGA
GGACCTGCCAAAATCCAGCAGTAGCATCGTCATGTCCCATGCTTTCACCC
ATGTGACACACGTCACCTATCAAACACAGGGGGACCTAGTCATGCATGCC
CTCACGTCTACGATACCTGCCTTGGGTGTTAGAAGGAACCTGGCGCAGCA
TTTGCTCAAGAAGCGTCCACTGCTGATGGGAGGAGGCGGAGGAGCAGGTG
GAGACTCAGGACTCCTGCATAACTCTCATAGCTTTCACAGCTCGGCGCCT
TCGCTGGGAGGCGGCACACCGGGGGAATGGAATCACGGTGAGTGTTCATT
TTAA
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Synonyms
Publications