jgi.p|Nanoce1779_2|577252, mRNA_412 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577252
Unique Name	mRNA_412
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2960
Alignment location	scaffold_3:1018926..1021885 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577338
Track	FilteredModels2
ProteinId	577252

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1018926..1021885 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577252	gene_412	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577252	mRNA_412-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_412	CDS_412	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1018926..1021885-
coding sequence from alignment at scaffold_3:1018926..1021885-

mRNA sequence

>mRNA_412 ID=mRNA_412|Name=jgi.p|Nanoce1779_2|577252|organism=Nannochloropsis oceanica|type=mRNA|length=2960bp
ACAGGCATCTACTTGCCCAGGAGACGTGCACCTTATTGCCAGAAGATCCG
GCATTCTGGCTGCATGATACGCCTGATTGGCTGCATTTCGACGCAAAGGC
GAGCACACGACGCTCCGATGGTGGGTGTGACAGAGGAGGCCTCAGTCCCA
CAGTATGTCCCTACGCCCTCGTCATCGACGTCACGTAGACGTTTCTCGCC
TATAAAGCGCTACCTGGTATGGCTTCTCTCTATAATACTAATCCTCCCAC
TGTTGCTGGCCCAAGGGGTCCAAGCGGCTCAGGCGAACGAGGACGATTCG
ACGGCGATGGAGTGCGATGCGGACACCCTGATCAGCTCTAGCAGCAGCAG
TCGCAGCTCGACCGGTAGCACCACTGGCAGCACCACTGGTACGCATCGAT
TCTTCAACCGCGGCAAAAAGCGGGGCGGGGGCGGGAAGCACGTGTTGATG
GTGTCCATCAACGAGTTGAGCCACATCAAGCCCTTGACGGCCCTCGCCCG
GGAGCTGCTTCGACGCGGCCACCGAGTAACATTTGTCGCGCCAGAGTCTT
GCCTGCTCAGCAGCGGTGCAAGCGCAAGTAGCAACAGCATTGGTGAAGAT
GGGCCACCGGCAGCAGCACCGTGCCAGCTTGATACTAGGAGCTGGATGAC
GACGTATTTACCTAAGGCCACATTCCTTAGCGCAGGCCCCGCCTTAACGT
CCGCAGAAAAGGAAGCAGCCGCGCCACGAGATTTGGGTCGGGCGGTATTG
TATGCCTTACAAACAGTCTCGGACGTAAACGAGGCGTTGCTCACGTGTTT
GCTCGACACATATTCCCCTGTCCCGGACAGTCCCGGCGTGACGACCACGA
CGGCCGAGAGCGATAAAATGGAGAAGTTGCCATCGCCCGATATGATGGTA
GTTGATTTCCTGGCCACTGCCGCCATGGATGCGGCTGAGGTCTTGGGGGT
ACCATTGATGGTAAATAACCCCTTTCCCATTTGTCATGATCTGACAGAGC
CCCAAGGGATTTTGGTGCCAGTGCATGCCTTTCCCGCCCCCCTTCGCAGC
CTCAAAACGTTCAAGGGACGGATCGCCAACTTGATCAACCACATCCTTTG
GCTCGGCGTCGGCTTGTACGCAGCCCGCCTCCGGAATCTGGCCCGGGCCC
GACACGCTCTGCCCTCTCTCCCTACCCTGGAGCAGCTCTCGTTTCGTGCC
AGCCCTGTGGAAGCCCGCGCATGGATCTTGCAAAACACGGTGTTTGGCCT
TGAGGTCCCTCGAGTCATTGACCCACGCACCCACATGGTCGGTCCCTTAC
TAATTCCCCAAGGCGGAGAAGCCTGCACGGCTGGTAAACCCGAAAGAGAC
TGCAGGGCAGCATTGAAATGGCTAGGGAGAGGAAGTGTGTCTCGCCCTGT
GGTTTTTGTCAATCTCGCTGAGCCTCTTGCACCAGCGCCCCTGGTGATGG
TCCAGGCAGCAATCAAGGCATTGGCTTCCGATCAGATAGGAGGGCATTTT
GATGTGTTGTGGGTGTTGGATGAAGGGAGTAAGGTGAGATTGGACAGGCC
CGTTCCGCCGCACATGCTGGTGGTGTCGGCAGTCAATCCCTTGGCAGTCC
TAAGCCATCCGAGGGTCGTCTTGTCTCTGTCCCAGCCATCACTAGAAGCT
GTGTCAGAGGCATTGTGGCATGGGGTGCCTGTGCTGGGGTTGCCATTGAG
GGGGTATGATCGTGGGGCGTGTACCTTGGCTCAAGATGCAGGGGCGGCTT
TGTGTTTATTGCCCACTGGAAGGAGAGGGTGGGGAGTCCCAGAGAATTTG
GTTGGGGCAATCAAGGAGCTAGCCCCTCCCTCCACCCCTTCTTCCCTCCC
TGCTTCGAAGAGGTACAGGGAGAATGCTAGGAGGCTTGCTGTGGTAATGC
AGGCGTCGGGAGGGGTGCCACGGGCGGCGGACTTGGTGGAGCTGGGTATG
AGGGTGGGGCTGTCGCATCTGCAGCAGCCGAAGCTGGAGATCGGGTTGGG
GATGGGGAGCAGCTGGTTGGGGGGATCGATGGTGGATGTTCGATTGGTGC
TGTTTGTGATTTTATTGTTGTCTTATTGGACGCTGACGTTGGGCTATCGG
CTACTGAAGCGGCTGCACAAGTGGTGGAGGCTGGCGATGGCAAAGGAGGG
CGATGGCGGGGAAGATGGGGGGGGGAAGGGAGTTCTAATGAAGCGGGAGT
TGAGTCATTTGCAGCAGCATCATCAGCCCCAGCCGCCTTTTCCTTCTCAG
AATGGATTGGCCAGGTCGGCCGCTTCATCGATCGCTTCCTCGTCTCGGAA
TGCCCCCCTGTTGCCTAACCCGGTGATGCTGTCTCCCTGTGTATCAGCAC
CGAACATGCTGGCGGGCGAAGAAGGTGGAAATGGACGACGAGAAGGAGGA
GGAAGAGGGGGAGTGCTGGCTCGAGATGATAGGGTCTCGCCAACCTACCA
GTACAGGGCCTCGAATAGCAATGGGTTTGGTGAAGAGGGGGGGAGGGGAG
GAGGAGGTTCTGGTGGAGGGAGTGGGACTGGACCATCACGACAGCGACCA
CCATTGCCGCCAAGGCCTCAACCACCCATTTAGTTAAAGGAGGGGAGGAG
GAAGGATAGGACATAGGTTTGTATTTAAGTCGATGGAAAGAGAAGAAGGA
AAAGAATAGGAGAGCACTGGAGGGATTGAGGAGAAGCGAAACAAAACAAT
GTGTGTTGTTCACTGTGCTCATCAAAGTAGGAAGATGGACAACATCAATA
ATAAGAAGGAGAAATATGTATATCCCCAGGGGAAGGGAGAGCGGAATTCC
ACTAAAAAGGAGAGCCCTCTGGGCAGGGAGGAAATGAGAACGACAGTCTA
CATGCACCGCATGTACGTTCTGTCTTCCTGTCTACGCTAGTCATCTTTCA
CTTCAGCACATTGGACCGGAGGAGCATAAAAGAGGAAAAAGATGCAGTTT
TTGAAGCCCC

protein sequence of jgi.p|Nanoce1779_2|577252

>mRNA_412-protein ID=mRNA_412-protein|Name=jgi.p|Nanoce1779_2|577252|organism=Nannochloropsis oceanica|type=polypeptide|length=840bp
MIRLIGCISTQRRAHDAPMVGVTEEASVPQYVPTPSSSTSRRRFSPIKRY
LVWLLSIILILPLLLAQGVQAAQANEDDSTAMECDADTLISSSSSSRSST
GSTTGSTTGTHRFFNRGKKRGGGGKHVLMVSINELSHIKPLTALARELLR
RGHRVTFVAPESCLLSSGASASSNSIGEDGPPAAAPCQLDTRSWMTTYLP
KATFLSAGPALTSAEKEAAAPRDLGRAVLYALQTVSDVNEALLTCLLDTY
SPVPDSPGVTTTTAESDKMEKLPSPDMMVVDFLATAAMDAAEVLGVPLMV
NNPFPICHDLTEPQGILVPVHAFPAPLRSLKTFKGRIANLINHILWLGVG
LYAARLRNLARARHALPSLPTLEQLSFRASPVEARAWILQNTVFGLEVPR
VIDPRTHMVGPLLIPQGGEACTAGKPERDCRAALKWLGRGSVSRPVVFVN
LAEPLAPAPLVMVQAAIKALASDQIGGHFDVLWVLDEGSKVRLDRPVPPH
MLVVSAVNPLAVLSHPRVVLSLSQPSLEAVSEALWHGVPVLGLPLRGYDR
GACTLAQDAGAALCLLPTGRRGWGVPENLVGAIKELAPPSTPSSLPASKR
YRENARRLAVVMQASGGVPRAADLVELGMRVGLSHLQQPKLEIGLGMGSS
WLGGSMVDVRLVLFVILLLSYWTLTLGYRLLKRLHKWWRLAMAKEGDGGE
DGGGKGVLMKRELSHLQQHHQPQPPFPSQNGLARSAASSIASSSRNAPLL
PNPVMLSPCVSAPNMLAGEEGGNGRREGGGRGGVLARDDRVSPTYQYRAS
NSNGFGEEGGRGGGGSGGGSGTGPSRQRPPLPPRPQPPI*

mRNA from alignment at scaffold_3:1018926..1021885-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_412 ID=mRNA_412|Name=jgi.p|Nanoce1779_2|577252|organism=Nannochloropsis oceanica|type=mRNA|length=2960bp|location=Sequence derived from alignment at scaffold_3:1018926..1021885- (Nannochloropsis oceanica)
ACAGGCATCTACTTGCCCAGGAGACGTGCACCTTATTGCCAGAAGATCCG
GCATTCTGGCTGCATGATACGCCTGATTGGCTGCATTTCGACGCAAAGGC
GAGCACACGACGCTCCGATGGTGGGTGTGACAGAGGAGGCCTCAGTCCCA
CAGTATGTCCCTACGCCCTCGTCATCGACGTCACGTAGACGTTTCTCGCC
TATAAAGCGCTACCTGGTATGGCTTCTCTCTATAATACTAATCCTCCCAC
TGTTGCTGGCCCAAGGGGTCCAAGCGGCTCAGGCGAACGAGGACGATTCG
ACGGCGATGGAGTGCGATGCGGACACCCTGATCAGCTCTAGCAGCAGCAG
TCGCAGCTCGACCGGTAGCACCACTGGCAGCACCACTGGTACGCATCGAT
TCTTCAACCGCGGCAAAAAGCGGGGCGGGGGCGGGAAGCACGTGTTGATG
GTGTCCATCAACGAGTTGAGCCACATCAAGCCCTTGACGGCCCTCGCCCG
GGAGCTGCTTCGACGCGGCCACCGAGTAACATTTGTCGCGCCAGAGTCTT
GCCTGCTCAGCAGCGGTGCAAGCGCAAGTAGCAACAGCATTGGTGAAGAT
GGGCCACCGGCAGCAGCACCGTGCCAGCTTGATACTAGGAGCTGGATGAC
GACGTATTTACCTAAGGCCACATTCCTTAGCGCAGGCCCCGCCTTAACGT
CCGCAGAAAAGGAAGCAGCCGCGCCACGAGATTTGGGTCGGGCGGTATTG
TATGCCTTACAAACAGTCTCGGACGTAAACGAGGCGTTGCTCACGTGTTT
GCTCGACACATATTCCCCTGTCCCGGACAGTCCCGGCGTGACGACCACGA
CGGCCGAGAGCGATAAAATGGAGAAGTTGCCATCGCCCGATATGATGGTA
GTTGATTTCCTGGCCACTGCCGCCATGGATGCGGCTGAGGTCTTGGGGGT
ACCATTGATGGTAAATAACCCCTTTCCCATTTGTCATGATCTGACAGAGC
CCCAAGGGATTTTGGTGCCAGTGCATGCCTTTCCCGCCCCCCTTCGCAGC
CTCAAAACGTTCAAGGGACGGATCGCCAACTTGATCAACCACATCCTTTG
GCTCGGCGTCGGCTTGTACGCAGCCCGCCTCCGGAATCTGGCCCGGGCCC
GACACGCTCTGCCCTCTCTCCCTACCCTGGAGCAGCTCTCGTTTCGTGCC
AGCCCTGTGGAAGCCCGCGCATGGATCTTGCAAAACACGGTGTTTGGCCT
TGAGGTCCCTCGAGTCATTGACCCACGCACCCACATGGTCGGTCCCTTAC
TAATTCCCCAAGGCGGAGAAGCCTGCACGGCTGGTAAACCCGAAAGAGAC
TGCAGGGCAGCATTGAAATGGCTAGGGAGAGGAAGTGTGTCTCGCCCTGT
GGTTTTTGTCAATCTCGCTGAGCCTCTTGCACCAGCGCCCCTGGTGATGG
TCCAGGCAGCAATCAAGGCATTGGCTTCCGATCAGATAGGAGGGCATTTT
GATGTGTTGTGGGTGTTGGATGAAGGGAGTAAGGTGAGATTGGACAGGCC
CGTTCCGCCGCACATGCTGGTGGTGTCGGCAGTCAATCCCTTGGCAGTCC
TAAGCCATCCGAGGGTCGTCTTGTCTCTGTCCCAGCCATCACTAGAAGCT
GTGTCAGAGGCATTGTGGCATGGGGTGCCTGTGCTGGGGTTGCCATTGAG
GGGGTATGATCGTGGGGCGTGTACCTTGGCTCAAGATGCAGGGGCGGCTT
TGTGTTTATTGCCCACTGGAAGGAGAGGGTGGGGAGTCCCAGAGAATTTG
GTTGGGGCAATCAAGGAGCTAGCCCCTCCCTCCACCCCTTCTTCCCTCCC
TGCTTCGAAGAGGTACAGGGAGAATGCTAGGAGGCTTGCTGTGGTAATGC
AGGCGTCGGGAGGGGTGCCACGGGCGGCGGACTTGGTGGAGCTGGGTATG
AGGGTGGGGCTGTCGCATCTGCAGCAGCCGAAGCTGGAGATCGGGTTGGG
GATGGGGAGCAGCTGGTTGGGGGGATCGATGGTGGATGTTCGATTGGTGC
TGTTTGTGATTTTATTGTTGTCTTATTGGACGCTGACGTTGGGCTATCGG
CTACTGAAGCGGCTGCACAAGTGGTGGAGGCTGGCGATGGCAAAGGAGGG
CGATGGCGGGGAAGATGGGGGGGGGAAGGGAGTTCTAATGAAGCGGGAGT
TGAGTCATTTGCAGCAGCATCATCAGCCCCAGCCGCCTTTTCCTTCTCAG
AATGGATTGGCCAGGTCGGCCGCTTCATCGATCGCTTCCTCGTCTCGGAA
TGCCCCCCTGTTGCCTAACCCGGTGATGCTGTCTCCCTGTGTATCAGCAC
CGAACATGCTGGCGGGCGAAGAAGGTGGAAATGGACGACGAGAAGGAGGA
GGAAGAGGGGGAGTGCTGGCTCGAGATGATAGGGTCTCGCCAACCTACCA
GTACAGGGCCTCGAATAGCAATGGGTTTGGTGAAGAGGGGGGGAGGGGAG
GAGGAGGTTCTGGTGGAGGGAGTGGGACTGGACCATCACGACAGCGACCA
CCATTGCCGCCAAGGCCTCAACCACCCATTTAGTTAAAGGAGGGGAGGAG
GAAGGATAGGACATAGGTTTGTATTTAAGTCGATGGAAAGAGAAGAAGGA
AAAGAATAGGAGAGCACTGGAGGGATTGAGGAGAAGCGAAACAAAACAAT
GTGTGTTGTTCACTGTGCTCATCAAAGTAGGAAGATGGACAACATCAATA
ATAAGAAGGAGAAATATGTATATCCCCAGGGGAAGGGAGAGCGGAATTCC
ACTAAAAAGGAGAGCCCTCTGGGCAGGGAGGAAATGAGAACGACAGTCTA
CATGCACCGCATGTACGTTCTGTCTTCCTGTCTACGCTAGTCATCTTTCA
CTTCAGCACATTGGACCGGAGGAGCATAAAAGAGGAAAAAGATGCAGTTT
TTGAAGCCCC

Coding sequence (CDS) from alignment at scaffold_3:1018926..1021885-

>mRNA_412 ID=mRNA_412|Name=jgi.p|Nanoce1779_2|577252|organism=Nannochloropsis oceanica|type=CDS|length=2520bp|location=Sequence derived from alignment at scaffold_3:1018926..1021885- (Nannochloropsis oceanica)
ATGATACGCCTGATTGGCTGCATTTCGACGCAAAGGCGAGCACACGACGC
TCCGATGGTGGGTGTGACAGAGGAGGCCTCAGTCCCACAGTATGTCCCTA
CGCCCTCGTCATCGACGTCACGTAGACGTTTCTCGCCTATAAAGCGCTAC
CTGGTATGGCTTCTCTCTATAATACTAATCCTCCCACTGTTGCTGGCCCA
AGGGGTCCAAGCGGCTCAGGCGAACGAGGACGATTCGACGGCGATGGAGT
GCGATGCGGACACCCTGATCAGCTCTAGCAGCAGCAGTCGCAGCTCGACC
GGTAGCACCACTGGCAGCACCACTGGTACGCATCGATTCTTCAACCGCGG
CAAAAAGCGGGGCGGGGGCGGGAAGCACGTGTTGATGGTGTCCATCAACG
AGTTGAGCCACATCAAGCCCTTGACGGCCCTCGCCCGGGAGCTGCTTCGA
CGCGGCCACCGAGTAACATTTGTCGCGCCAGAGTCTTGCCTGCTCAGCAG
CGGTGCAAGCGCAAGTAGCAACAGCATTGGTGAAGATGGGCCACCGGCAG
CAGCACCGTGCCAGCTTGATACTAGGAGCTGGATGACGACGTATTTACCT
AAGGCCACATTCCTTAGCGCAGGCCCCGCCTTAACGTCCGCAGAAAAGGA
AGCAGCCGCGCCACGAGATTTGGGTCGGGCGGTATTGTATGCCTTACAAA
CAGTCTCGGACGTAAACGAGGCGTTGCTCACGTGTTTGCTCGACACATAT
TCCCCTGTCCCGGACAGTCCCGGCGTGACGACCACGACGGCCGAGAGCGA
TAAAATGGAGAAGTTGCCATCGCCCGATATGATGGTAGTTGATTTCCTGG
CCACTGCCGCCATGGATGCGGCTGAGGTCTTGGGGGTACCATTGATGGTA
AATAACCCCTTTCCCATTTGTCATGATCTGACAGAGCCCCAAGGGATTTT
GGTGCCAGTGCATGCCTTTCCCGCCCCCCTTCGCAGCCTCAAAACGTTCA
AGGGACGGATCGCCAACTTGATCAACCACATCCTTTGGCTCGGCGTCGGC
TTGTACGCAGCCCGCCTCCGGAATCTGGCCCGGGCCCGACACGCTCTGCC
CTCTCTCCCTACCCTGGAGCAGCTCTCGTTTCGTGCCAGCCCTGTGGAAG
CCCGCGCATGGATCTTGCAAAACACGGTGTTTGGCCTTGAGGTCCCTCGA
GTCATTGACCCACGCACCCACATGGTCGGTCCCTTACTAATTCCCCAAGG
CGGAGAAGCCTGCACGGCTGGTAAACCCGAAAGAGACTGCAGGGCAGCAT
TGAAATGGCTAGGGAGAGGAAGTGTGTCTCGCCCTGTGGTTTTTGTCAAT
CTCGCTGAGCCTCTTGCACCAGCGCCCCTGGTGATGGTCCAGGCAGCAAT
CAAGGCATTGGCTTCCGATCAGATAGGAGGGCATTTTGATGTGTTGTGGG
TGTTGGATGAAGGGAGTAAGGTGAGATTGGACAGGCCCGTTCCGCCGCAC
ATGCTGGTGGTGTCGGCAGTCAATCCCTTGGCAGTCCTAAGCCATCCGAG
GGTCGTCTTGTCTCTGTCCCAGCCATCACTAGAAGCTGTGTCAGAGGCAT
TGTGGCATGGGGTGCCTGTGCTGGGGTTGCCATTGAGGGGGTATGATCGT
GGGGCGTGTACCTTGGCTCAAGATGCAGGGGCGGCTTTGTGTTTATTGCC
CACTGGAAGGAGAGGGTGGGGAGTCCCAGAGAATTTGGTTGGGGCAATCA
AGGAGCTAGCCCCTCCCTCCACCCCTTCTTCCCTCCCTGCTTCGAAGAGG
TACAGGGAGAATGCTAGGAGGCTTGCTGTGGTAATGCAGGCGTCGGGAGG
GGTGCCACGGGCGGCGGACTTGGTGGAGCTGGGTATGAGGGTGGGGCTGT
CGCATCTGCAGCAGCCGAAGCTGGAGATCGGGTTGGGGATGGGGAGCAGC
TGGTTGGGGGGATCGATGGTGGATGTTCGATTGGTGCTGTTTGTGATTTT
ATTGTTGTCTTATTGGACGCTGACGTTGGGCTATCGGCTACTGAAGCGGC
TGCACAAGTGGTGGAGGCTGGCGATGGCAAAGGAGGGCGATGGCGGGGAA
GATGGGGGGGGGAAGGGAGTTCTAATGAAGCGGGAGTTGAGTCATTTGCA
GCAGCATCATCAGCCCCAGCCGCCTTTTCCTTCTCAGAATGGATTGGCCA
GGTCGGCCGCTTCATCGATCGCTTCCTCGTCTCGGAATGCCCCCCTGTTG
CCTAACCCGGTGATGCTGTCTCCCTGTGTATCAGCACCGAACATGCTGGC
GGGCGAAGAAGGTGGAAATGGACGACGAGAAGGAGGAGGAAGAGGGGGAG
TGCTGGCTCGAGATGATAGGGTCTCGCCAACCTACCAGTACAGGGCCTCG
AATAGCAATGGGTTTGGTGAAGAGGGGGGGAGGGGAGGAGGAGGTTCTGG
TGGAGGGAGTGGGACTGGACCATCACGACAGCGACCACCATTGCCGCCAA
GGCCTCAACCACCCATTTAG

Synonyms

Publications