jgi.p|Nanoce1779_2|586601, mRNA_4119 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586601
Unique NamemRNA_4119
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length521
Alignment locationscaffold_8:879005..879525 -

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Properties
Property NameValue
TranscriptId586687
TrackFilteredModels2
ProteinId586601
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:879005..879525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586601gene_4119Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586601mRNA_4119-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4119CDS_4119Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4119 ID=mRNA_4119|Name=jgi.p|Nanoce1779_2|586601|organism=Nannochloropsis oceanica|type=mRNA|length=521bp
GCTGCTGCTGCTGGTATTGCGGGTAATGGTGGTACTGATGCTGCTGGTGC
TGCGGATGAGGGTAGCCCTGGCGCTGGTAGTGGTGGCGGTGCGAGAAACC
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGATATTGCTGCTGCT
GATGTTGTGGGTAATACTGGGCGTACGGCCCTTGCGAAGGCGGCATGGGC
ACCGCCGACGAAGGGACATACTGCTGGGAAGCTCCACTCATTCCCCGAGG
CTGATTCCGACCGTTCATGGCGACGGTAACGGGGCCGGGGACAGTCCCGT
TCGTAGTGCTAGTACTGGTACCAGTGCTGGTGCTAGTGCTGACTGCCTTT
TTGCTGCCACCTGTACTCGGCTACACACACGCAGGGCCTCTGGGAGGCAG
ACCTTCAGCCGAAGGCGGCTCTGGAAGGGAAGCGGAGGATTAGAGAATCT
TCGTGGCTTATTGACCGCCGTTTTTTGAAGGCAATGGTGGCAATGTGGCA
GGTGGAATAGCCGTGTACTGT
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protein sequence of jgi.p|Nanoce1779_2|586601

>mRNA_4119-protein ID=mRNA_4119-protein|Name=jgi.p|Nanoce1779_2|586601|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MVVLMLLVLRMRVALALVVVAVRETLLLLLLLLLLLLILLLLMLWVILGV
RPLRRRHGHRRRRDILLGSSTHSPRLIPTVHGDGNGAGDSPVRSASTGTS
AGASADCLFAATCTRLHTRRASGRQTFSRRRLWKGSGGLENLRGLLTAVF
*
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mRNA from alignment at scaffold_8:879005..879525-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4119 ID=mRNA_4119|Name=jgi.p|Nanoce1779_2|586601|organism=Nannochloropsis oceanica|type=mRNA|length=521bp|location=Sequence derived from alignment at scaffold_8:879005..879525- (Nannochloropsis oceanica)
GCTGCTGCTGCTGGTATTGCGGGTAATGGTGGTACTGATGCTGCTGGTGC
TGCGGATGAGGGTAGCCCTGGCGCTGGTAGTGGTGGCGGTGCGAGAAACC
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGATATTGCTGCTGCT
GATGTTGTGGGTAATACTGGGCGTACGGCCCTTGCGAAGGCGGCATGGGC
ACCGCCGACGAAGGGACATACTGCTGGGAAGCTCCACTCATTCCCCGAGG
CTGATTCCGACCGTTCATGGCGACGGTAACGGGGCCGGGGACAGTCCCGT
TCGTAGTGCTAGTACTGGTACCAGTGCTGGTGCTAGTGCTGACTGCCTTT
TTGCTGCCACCTGTACTCGGCTACACACACGCAGGGCCTCTGGGAGGCAG
ACCTTCAGCCGAAGGCGGCTCTGGAAGGGAAGCGGAGGATTAGAGAATCT
TCGTGGCTTATTGACCGCCGTTTTTTGAAGGCAATGGTGGCAATGTGGCA
GGTGGAATAGCCGTGTACTGT
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Coding sequence (CDS) from alignment at scaffold_8:879005..879525-

>mRNA_4119 ID=mRNA_4119|Name=jgi.p|Nanoce1779_2|586601|organism=Nannochloropsis oceanica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_8:879005..879525- (Nannochloropsis oceanica)
ATGGTGGTACTGATGCTGCTGGTGCTGCGGATGAGGGTAGCCCTGGCGCT
GGTAGTGGTGGCGGTGCGAGAAACCCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGATATTGCTGCTGCTGATGTTGTGGGTAATACTGGGCGTA
CGGCCCTTGCGAAGGCGGCATGGGCACCGCCGACGAAGGGACATACTGCT
GGGAAGCTCCACTCATTCCCCGAGGCTGATTCCGACCGTTCATGGCGACG
GTAACGGGGCCGGGGACAGTCCCGTTCGTAGTGCTAGTACTGGTACCAGT
GCTGGTGCTAGTGCTGACTGCCTTTTTGCTGCCACCTGTACTCGGCTACA
CACACGCAGGGCCTCTGGGAGGCAGACCTTCAGCCGAAGGCGGCTCTGGA
AGGGAAGCGGAGGATTAGAGAATCTTCGTGGCTTATTGACCGCCGTTTTT
TGA
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Synonyms
Publications