jgi.p|Nanoce1779_2|623081, mRNA_4117 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|623081
Unique Name	mRNA_4117
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1194
Alignment location	scaffold_8:875618..876965 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	623167
Track	FilteredModels2
ProteinId	623081

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:875618..876965 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|623081	gene_4117	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|623081	mRNA_4117-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4117	CDS_4117	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:875618..876965+
coding sequence from alignment at scaffold_8:875618..876965+

mRNA sequence

>mRNA_4117 ID=mRNA_4117|Name=jgi.p|Nanoce1779_2|623081|organism=Nannochloropsis oceanica|type=mRNA|length=1194bp
ATGTATCCCGGCTCGTCCAACAATGTCCTCCCTTTCACCTCCCTCCTCGA
GGTTGTGACCCCCGAGCAGCATCCTACCTGGCCAGTATACCGCGTTCTGG
AGCCGGACGGCCGGGTCCGTGCCGGGGCCCTCGAACCACAGTTAGGCGAA
GCGACCGTCAAAAAGATGTATACGATCATGGTACGATTGCAAGCGATGGA
CACAATTTTCTACAACGCGCAACGCCAAGGCCGAATATCCTTCTACATGA
CTAGCACGGGCGAGGAGGCCACGCACGTCGGGAGCGCTGCTGCCCTCATT
CCCACCGACCCTGTGTTCGCACAATACCGAGAAGGTGGAGTGTTGATGTG
GCGGGGATTCACCCTCGATCAATTCGCGGATCAATGCTTCTCCAATTGCG
ACGACCTGGGGAAGGGCCGGCAAATGCCCATCCACTACGGCACGGCCGCG
CTGCACTTCCAAACCATCTCCTCGCCCCTCGCCACCCAAATTCCCCAAGC
TGTCGGGGCTGCTTACGGAGTCAAGCTCGAAGACGCCCTCCAGCCGATAC
AGCAAAAGCGATGCGTCATCTGCTATTTTGGAGAGGGGGCGGCGAGCGAG
GGCGACTTCCATGCAGCCCTTAATTTTGCAGCCACCCTGCAGGCACCCGT
CATCTTCTTCTGCCGCAACAACGGCTATGCGATCAGTACTCCCGTCAAGG
ACCAGTTCCGGGGGGATGGTATCGTGAGCCGCGCTTCCGGGTATGGTATG
CACGCCATCCGTGTGGACGGTAACGACCTCCTGGCCGTTTTCAATGCGTG
CCAGGCAGCGAGGGAGGTGTGCGTGAGGGAGGGGAGACCTGTCCTGGTCG
AAGCCATGACGTACCGGGTGGGTCACCATTCCACCAGTGACGACTCGACG
CGGTACCGCTCTTTGGTCGAAATCAGAAAGTGGCACGAACATGATTGTCC
GCTTAAGAGGCTTCGGCGATGGATGGAGGGGAAGGGGTGGTGGTCCCAAG
AGGAGGAGCAGCAGTTACGAGACGAGGAGAGAGTAGCTGTCTTGCAGGCA
TTGGAGCGGGCGGAGGTGAAGAAGAAACCGGGAAGGAAAGAGTTGTTCGC
GGATGTGTATAAAGAGAAGCCCCGGCATTTGGTGGAGCAGGAGGAGGAGT
TGGAGGCGCACGTCAAAAAATACCCGGAAGTGTATGGGGACTGA

protein sequence of jgi.p|Nanoce1779_2|623081

>mRNA_4117-protein ID=mRNA_4117-protein|Name=jgi.p|Nanoce1779_2|623081|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MYPGSSNNVLPFTSLLEVVTPEQHPTWPVYRVLEPDGRVRAGALEPQLGE
ATVKKMYTIMVRLQAMDTIFYNAQRQGRISFYMTSTGEEATHVGSAAALI
PTDPVFAQYREGGVLMWRGFTLDQFADQCFSNCDDLGKGRQMPIHYGTAA
LHFQTISSPLATQIPQAVGAAYGVKLEDALQPIQQKRCVICYFGEGAASE
GDFHAALNFAATLQAPVIFFCRNNGYAISTPVKDQFRGDGIVSRASGYGM
HAIRVDGNDLLAVFNACQAAREVCVREGRPVLVEAMTYRVGHHSTSDDST
RYRSLVEIRKWHEHDCPLKRLRRWMEGKGWWSQEEEQQLRDEERVAVLQA
LERAEVKKKPGRKELFADVYKEKPRHLVEQEEELEAHVKKYPEVYGD*

mRNA from alignment at scaffold_8:875618..876965+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4117 ID=mRNA_4117|Name=jgi.p|Nanoce1779_2|623081|organism=Nannochloropsis oceanica|type=mRNA|length=1348bp|location=Sequence derived from alignment at scaffold_8:875618..876965+ (Nannochloropsis oceanica)
ATGTATCCCGGCTCGTCCAACAATGTCCTCCCTTTCACCTCCCTCCTCGA
GGTTGTGACCCCCGAGCAGCATCCTACCTGGCCAGTATACCGCGTTCTGG
AGCCGGACGGCCGGGTCCGTGCCGGGGCCCTCGAACCACAGTTAGGCGAA
GCGACCGTCAAAAAGATGTATACGATCATGGTACGATTGCAAGCGATGGA
CACAATTTTCTACAACGCGCAACGCCAAGGCCGAATATCCTTCTACATGA
CTAGCACGGGCGAGGAGGCCACGCACGTCGGGAGCGCTGCTGCCCTCATT
CCCACCGACCCTGTGTTCGCACAATACCGAGAAGGTGGAGTGTTGATGTG
GCGGGGATTCACCCTCGATCAATTCGCGGATCAATGCTTCTCCAATTGCG
ACGACCTGGGGAAGGGCCGGCAAATGCCCATCCACTACGGCACGGCCGCG
CTGCACTTCCAAACCATCTCCTCGCCCCTCGCCACCCAAATTCCCCAAGC
TGTCGGGGCTGCTTACGGAGTCAAGCTCGAAGACGCCCTCCAGCCGATAC
AGCAAAAGCGATGCGTCATCTGCTATTTTGGAGAGGGGGCGGCGAGCGAG
GGCGACTTCCATGCAGCCCTTAATTTTGCAGCCACCCTGCAGGTACAATA
CATGTACCCATGCCTCTAGTCCTTCCTCCCTCTCTCCTTTCTCCTCTCTC
TCCTCTCTTCTTTGCCCGCTCTCATGCGCCGACATACATGCCTCTCTCAA
CCCCCCTTCTCTTCTCCTTCCCACCCTCCCTCCCTCTCCCTCCCAGGCAC
CCGTCATCTTCTTCTGCCGCAACAACGGCTATGCGATCAGTACTCCCGTC
AAGGACCAGTTCCGGGGGGATGGTATCGTGAGCCGCGCTTCCGGGTATGG
TATGCACGCCATCCGTGTGGACGGTAACGACCTCCTGGCCGTTTTCAATG
CGTGCCAGGCAGCGAGGGAGGTGTGCGTGAGGGAGGGGAGACCTGTCCTG
GTCGAAGCCATGACGTACCGGGTGGGTCACCATTCCACCAGTGACGACTC
GACGCGGTACCGCTCTTTGGTCGAAATCAGAAAGTGGCACGAACATGATT
GTCCGCTTAAGAGGCTTCGGCGATGGATGGAGGGGAAGGGGTGGTGGTCC
CAAGAGGAGGAGCAGCAGTTACGAGACGAGGAGAGAGTAGCTGTCTTGCA
GGCATTGGAGCGGGCGGAGGTGAAGAAGAAACCGGGAAGGAAAGAGTTGT
TCGCGGATGTGTATAAAGAGAAGCCCCGGCATTTGGTGGAGCAGGAGGAG
GAGTTGGAGGCGCACGTCAAAAAATACCCGGAAGTGTATGGGGACTGA

Coding sequence (CDS) from alignment at scaffold_8:875618..876965+

>mRNA_4117 ID=mRNA_4117|Name=jgi.p|Nanoce1779_2|623081|organism=Nannochloropsis oceanica|type=CDS|length=2388bp|location=Sequence derived from alignment at scaffold_8:875618..876965+ (Nannochloropsis oceanica)
ATGTATCCCGGCTCGTCCAACAATGTCCTCCCTTTCACCTCCCTCCTCGA
GGTTGTGACCCCCGAGCAGCATCCTACCTGGCCAGTATACCGCGTTCTGG
AGCCGGACGGCCGGGTCCGTGCCGGGGCCCTCGAACCACAGTTAGGCGAA
GCGACCGTCAAAAAGATGTATACGATCATGGTACGATTGCAAGCGATGGA
CACAATTTTCTACAACGCGCAACGCCAAGGCCGAATATCCTTCTACATGA
CTAGCACGGGCGAGGAGGCCACGCACGTCGGGAGCGCTGCTGCCCTCATT
CCCACCGACCCTGTGTTCGCACAATACCGAGAAGGTGGAGTGTTGATGTG
GCGGGGATTCACCCTCGATCAATTCGCGGATCAATGCTTCTCCAATTGCG
ACGACCTGGGGAAGGGCCGGCAAATGCCCATCCACTACGGCACGGCCGCG
CTGCACTTCCAAACCATCTCCTCGCCCCTCGCCACCCAAATTCCCCAAGC
TGTCGGGGCTGCTTACGGAGTCAAGCTCGAAGACGCCCTCCAGCCGATAC
AGCAAAAGCGATGCGTCATCTGCTATTTTGGAGAGGGGGCGGCGAGCGAG
GGCGACTTCCATGCAGCCCTTAATTTTGCAGCCACCCTGCAGGCACCCGT
CATCTTCTTCTGCCGCAACAACGGCTATGCGATCAGTACTCCCGTCAAGG
ACCAGTTCCGGGGGGATGGTATCGTGAGCCGCGCTTCCGGGTATGGTATG
CACGCCATCCGTGTGGACGGTAACGACCTCCTGGCCGTTTTCAATGCGTG
CCAGGCAGCGAGGGAGGTGTGCGTGAGGGAGGGGAGACCTGTCCTGGTCG
AAGCCATGACGTACCGGGTGGGTCACCATTCCACCAGTGACGACTCGACG
CGGTACCGCTCTTTGGTCGAAATCAGAAAGTGGCACGAACATGATTGTCC
GCTTAAGAGGCTTCGGCGATGGATGGAGGGGAAGGGGTGGTGGTCCCAAG
AGGAGGAGCAGCAGTTACGAGACGAGGAGAGAGTAGCTGTCTTGCAGGCA
TTGGAGCGGGCGGAGGTGAAGAAGAAACCGGGAAGGAAAGAGTTGTTCGC
GGATGTGTATAAAGAGAAGCCCCGGCATTTGGTGGAGCAGGAGGAGGAGT
TGGAGGCGCACGTCAAAAAATACCCGGAAGTGTATGGGGACTGAATGTAT
CCCGGCTCGTCCAACAATGTCCTCCCTTTCACCTCCCTCCTCGAGGTTGT
GACCCCCGAGCAGCATCCTACCTGGCCAGTATACCGCGTTCTGGAGCCGG
ACGGCCGGGTCCGTGCCGGGGCCCTCGAACCACAGTTAGGCGAAGCGACC
GTCAAAAAGATGTATACGATCATGGTACGATTGCAAGCGATGGACACAAT
TTTCTACAACGCGCAACGCCAAGGCCGAATATCCTTCTACATGACTAGCA
CGGGCGAGGAGGCCACGCACGTCGGGAGCGCTGCTGCCCTCATTCCCACC
GACCCTGTGTTCGCACAATACCGAGAAGGTGGAGTGTTGATGTGGCGGGG
ATTCACCCTCGATCAATTCGCGGATCAATGCTTCTCCAATTGCGACGACC
TGGGGAAGGGCCGGCAAATGCCCATCCACTACGGCACGGCCGCGCTGCAC
TTCCAAACCATCTCCTCGCCCCTCGCCACCCAAATTCCCCAAGCTGTCGG
GGCTGCTTACGGAGTCAAGCTCGAAGACGCCCTCCAGCCGATACAGCAAA
AGCGATGCGTCATCTGCTATTTTGGAGAGGGGGCGGCGAGCGAGGGCGAC
TTCCATGCAGCCCTTAATTTTGCAGCCACCCTGCAGGCACCCGTCATCTT
CTTCTGCCGCAACAACGGCTATGCGATCAGTACTCCCGTCAAGGACCAGT
TCCGGGGGGATGGTATCGTGAGCCGCGCTTCCGGGTATGGTATGCACGCC
ATCCGTGTGGACGGTAACGACCTCCTGGCCGTTTTCAATGCGTGCCAGGC
AGCGAGGGAGGTGTGCGTGAGGGAGGGGAGACCTGTCCTGGTCGAAGCCA
TGACGTACCGGGTGGGTCACCATTCCACCAGTGACGACTCGACGCGGTAC
CGCTCTTTGGTCGAAATCAGAAAGTGGCACGAACATGATTGTCCGCTTAA
GAGGCTTCGGCGATGGATGGAGGGGAAGGGGTGGTGGTCCCAAGAGGAGG
AGCAGCAGTTACGAGACGAGGAGAGAGTAGCTGTCTTGCAGGCATTGGAG
CGGGCGGAGGTGAAGAAGAAACCGGGAAGGAAAGAGTTGTTCGCGGATGT
GTATAAAGAGAAGCCCCGGCATTTGGTGGAGCAGGAGGAGGAGTTGGAGG
CGCACGTCAAAAAATACCCGGAAGTGTATGGGGACTGA

Synonyms

Publications