|
Properties
Property Name | Value |
TranscriptId | 424915 |
Track | FilteredModels2 |
ProteinId | 424829 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_8 | supercontig | scaffold_8:872913..875117 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4116 ID=mRNA_4116|Name=jgi.p|Nanoce1779_2|424829|organism=Nannochloropsis oceanica|type=mRNA|length=2027bp GGCGAAAGTAGTAAATCACGTCTTTTGTCTGTAGTCTGTAGGTGTGCCTG TGGATTATGAAGTGTGTAGAGGGTGTGTGTGGATTGTATTTACGATGCTG TCAAAGCTGTCAAAACAGAGGAAGCACGACACGCCGTGGCCCGGGCGCAT TTTTCTTTCCGTGCCGGTCACGCTCAGCGAGAGGAGCGATGCCGCGTTGA ATCACGAGGGCTTACCTTTTTACGCAACCCACACTCACATAACATGCTAT GAACACAAACAGACATACAGCCGAGGAGCCAATAATCCGGACGCTGGTTT TCGAATGGCTCCGCACCGACAAAAGGCCATGCATCTGCCCAACGGGGCCC TGGTACTGCTCGTAGGTGCAGCGCTCTTTTGCTGCTGCTGCTGTTGCTGT CAGGCATACGTCCCTTCCCCTCTCTTTGGTCCCAAACGGCGTTCCCATCC CTTGCCCGCCTTACGCCACGCTGCCCGCCCCATTGCCCGCATCGCCCCCT TCCCCCCTCTGCGCTCCACATTCTCCTCCTTCTTCTCTGAGCGGACAGGT TCAAATAACTCCTCCTCTGCCTCCAACGATAATTTGTCGTATGAACTCCG TTTATTGGAGCTAGAAGGTCGACTTTTGAAATTGGAGGGCTTGACAGCCC GGGCCGCCAAGGCCGGTGGCGGGGGAGGGGGAGGAGGAGGGAGGGGCAGG GCGGGGGGGAATGTAAAAGGTGCAACGGGTATGGGGACGAGTGCTTTCAA TCATATTTTACCGGACGGGGAGCAGTTGCTGTTGGGATGTACCTTTGCGG GGGCTGTACTCGGTTTGTTTGTAGGTCGGGCGTTGTTAAACAAGCAGATG TATTTGGGAGGGGTGGGGGGGGCGGTGTTGGGGGTACATTTCTTTAATCA GGATGGAAATTTCGGCGCGGCTATTCGGGCAATGGGAAAGTTGGTGCTGT ACGCGTGTGATCGATTGGCCTATGCCTGGTCAGAGGTGAAGTTCAATTGG AAGGCATGGAGGGTTTATGAGAGGAGTTTTAAAAAATTGGAGAGTTTGGA TAGGGAGATGCAGGTGTCTCAGAAGATCAAGGCTTGGGATCAACAATATG GGGTGTCGAATAATGTGAATGTGTGGTTTAAAAAGTTTCAAACGTCGGCC AAAAACTTGGAAGAAAGTTTGAAGGACCAAGCGATCTACTGGCAGCGGAC CCAAAGGCTGCGCGATGAGCAGAGACAGGCACAGATGATTCATCAAGAAG TTCAACGGCAGCAAGAGAGAGAGCGGATGAGGCAGAATGGTGGAGGAGTG GGGGGAGGGTCGTTTAAGTCAGGGAGTGGTGGTATTGCTGAGGAAGGGAG GGAGCAGCAGCAGCAGCAAGAGAAGAAGGGAGGAGGTGAAGGTTTCCATG CAGCGGGTGACCATGAGAATAGGATCAAGGCTGGCGGGTTCTGGCCATCA CATAATGATGAAACTTCTTCCTCTTCCACCTCCACCTCCTCATCCTTGGA CGCGACCGGCGCCATAGGCAATGGTGGTAGTATCAATGGCCTCCAGGGAC GGAGTGGCCGGTTGCCCTCTTCCTCGCCCTCCCCCTCTTCCTCGTCCTCT CCTACGATAGCCTCGGAGTTCAACCGTTTTGTCAAGAGCTTCGGGGGGAC CACAAGCGGTGTTTCCCGTTCCACTCACTCTCCATCTTCCTCCCGTACTT CGTCCGCCTCTAATGTAAATACACAAATTCATGGCCATCAGGCGAGCAAC CATCAGCAGCAGGAGGAGCAGCAGCAGCAGGGATTTAATAAGGGCGGGAA TGACATTTTTACCTCTTCATCGGGAGGAGGGAAGAAGGGAGGAAGAGAAG AACAGGATGACAGTGGCGGTGAAGTTGGTATGTTTATGTAAAAAAGAGAA AACTCGAGGAAGAGAGTGAGGGATTACGCGCCATTTGGGGCGGTATGTGT TCTGTTTCTGTCTGTGTGGTGGTGGAGTGTCTAAATTGAAGCCGAAAACA AAGCGATTACAAAGGACAAAGATGAGT back to topprotein sequence of jgi.p|Nanoce1779_2|424829 >mRNA_4116-protein ID=mRNA_4116-protein|Name=jgi.p|Nanoce1779_2|424829|organism=Nannochloropsis oceanica|type=polypeptide|length=599bp MLSKLSKQRKHDTPWPGRIFLSVPVTLSERSDAALNHEGLPFYATHTHIT CYEHKQTYSRGANNPDAGFRMAPHRQKAMHLPNGALVLLVGAALFCCCCC CCQAYVPSPLFGPKRRSHPLPALRHAARPIARIAPFPPLRSTFSSFFSER TGSNNSSSASNDNLSYELRLLELEGRLLKLEGLTARAAKAGGGGGGGGGR GRAGGNVKGATGMGTSAFNHILPDGEQLLLGCTFAGAVLGLFVGRALLNK QMYLGGVGGAVLGVHFFNQDGNFGAAIRAMGKLVLYACDRLAYAWSEVKF NWKAWRVYERSFKKLESLDREMQVSQKIKAWDQQYGVSNNVNVWFKKFQT SAKNLEESLKDQAIYWQRTQRLRDEQRQAQMIHQEVQRQQERERMRQNGG GVGGGSFKSGSGGIAEEGREQQQQQEKKGGGEGFHAAGDHENRIKAGGFW PSHNDETSSSSTSTSSSLDATGAIGNGGSINGLQGRSGRLPSSSPSPSSS SSPTIASEFNRFVKSFGGTTSGVSRSTHSPSSSRTSSASNVNTQIHGHQA SNHQQQEEQQQQGFNKGGNDIFTSSSGGGKKGGREEQDDSGGEVGMFM* back to topmRNA from alignment at scaffold_8:872913..875117- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4116 ID=mRNA_4116|Name=jgi.p|Nanoce1779_2|424829|organism=Nannochloropsis oceanica|type=mRNA|length=2205bp|location=Sequence derived from alignment at scaffold_8:872913..875117- (Nannochloropsis oceanica) GGCGAAAGTAGTAAATCACGTCTTTTGTCTGTAGTCTGTAGGTGTGCCTG
TGGATTATGAAGTGTGTAGAGGGTGTGTGTGGATTGTATTTACGATGCTG
TCAAAGCTGTCAAAACAGAGGAAGCACGACACGCCGTGGCCCGGGCGCAT
TTTTCTTTCCGTGCCGGTCACGCTCAGCGAGAGGAGCGATGCCGCGTTGA
ATCACGAGGGCTTACCTTTTTACGCAACCCACACTCACATAACATGCTAT
GAACACAAACAGACATACAGCCGAGGAGCCAATAATCCGGACGCTGGTTT
TCGAATGGCTCCGCACCGACAAAAGGTGAGTCGCTGCTTTGACGCCCCTC
TCCCTTTTTTAAAGTCTCCCTCTCAAACCCACAGCAACGTACGCATGCCC
ACACCTCGAGCCATGCACCCCACATACACAGGCCATGCATCTGCCCAACG
GGGCCCTGGTACTGCTCGTAGGTGCAGCGCTCTTTTGCTGCTGCTGCTGT
TGCTGTCAGGCATACGTCCCTTCCCCTCTCTTTGGTCCCAAACGGCGTTC
CCATCCCTTGCCCGCCTTACGCCACGCTGCCCGCCCCATTGCCCGCATCG
CCCCCTTCCCCCCTCTGCGCTCCACATTCTCCTCCTTCTTCTCTGAGCGG
ACAGGTTCAAATAACTCCTCCTCTGCCTCCAACGATAATTTGTCGTATGA
ACTCCGTTTATTGGAGCTAGAAGGTCGACTTTTGAAATTGGAGGGCTTGA
CAGCCCGGGCCGCCAAGGCCGGTGGCGGGGGAGGGGGAGGAGGAGGGAGG
GGCAGGGCGGGGGGGAATGTAAAAGGTGCAACGGGTATGGGGACGAGTGC
TTTCAATCATATTTTACCGGACGGGGAGCAGTTGCTGTTGGGATGTACCT
TTGCGGGGGCTGTACTCGGTTTGTTTGTAGGTCGGGCGTTGTTAAACAAG
CAGATGTATTTGGGAGGGGTGGGGGGGGCGGTGTTGGGGGTACATTTCTT
TAATCAGGATGGAAATTTCGGCGCGGCTATTCGGGCAATGGGAAAGTTGG
TGCTGTACGCGTGTGATCGATTGGCCTATGCCTGGTCAGAGGTGAAGTTC
AATTGGAAGGCATGGAGGGTTTATGAGAGGAGTTTTAAAAAATTGGAGAG
TTTGGATAGGGAGATGCAGGTGTCTCAGAAGATCAAGGCTTGGGATCAAC
AATATGGGGTGTCGAATAATGTGAATGTGTGGTTTAAAAAGTTTCAAACG
TCGGCCAAAAACTTGGAAGAAAGTTTGAAGGACCAAGCGATCTACTGGCA
GCGGACCCAAAGGCTGCGCGATGAGCAGAGACAGGCACAGATGATTCATC
AAGAAGTTCAACGGCAGCAAGAGAGAGAGCGGATGAGGCAGAATGGTGGA
GGAGTGGGGGGAGGGTCGTTTAAGTCAGGGAGTGGTGGTATTGCTGAGGA
AGGGAGGGAGCAGCAGCAGCAGCAAGAGAAGAAGGGAGGAGGTGAAGGTT
TCCATGCAGCGGGTGACCATGAGAATAGGATCAAGGCTGGCGGGTTCTGG
CCATCACATAATGATGAAACTTCTTCCTCTTCCACCTCCACTCCCTCCGT
TGCTCCTCGACCTTCCTCCTACTCCTCAAGGGTCTCTTCCTCACCCTCCT
CCTTCTCGTCTTCCTCCTCATCCTTGGACGCGACCGGCGCCATAGGCAAT
GGTGGTAGTATCAATGGCCTCCAGGGACGGAGTGGCCGGTTGCCCTCTTC
CTCGCCCTCCCCCTCTTCCTCGTCCTCTCCTACGATAGCCTCGGAGTTCA
ACCGTTTTGTCAAGAGCTTCGGGGGGACCACAAGCGGTGTTTCCCGTTCC
ACTCACTCTCCATCTTCCTCCCGTACTTCGTCCGCCTCTAATGTAAATAC
ACAAATTCATGGCCATCAGGCGAGCAACCATCAGCAGCAGGAGGAGCAGC
AGCAGCAGGGATTTAATAAGGGCGGGAATGACATTTTTACCTCTTCATCG
GGAGGAGGGAAGAAGGGAGGAAGAGAAGAACAGGATGACAGTGGCGGTGA
AGTTGGTATGTTTATGTAAAAAAGAGAAAACTCGAGGAAGAGAGTGAGGG
ATTACGCGCCATTTGGGGCGGTATGTGTTCTGTTTCTGTCTGTGTGGTGG
TGGAGTGTCTAAATTGAAGCCGAAAACAAAGCGATTACAAAGGACAAAGA
TGAGT back to topCoding sequence (CDS) from alignment at scaffold_8:872913..875117- >mRNA_4116 ID=mRNA_4116|Name=jgi.p|Nanoce1779_2|424829|organism=Nannochloropsis oceanica|type=CDS|length=5391bp|location=Sequence derived from alignment at scaffold_8:872913..875117- (Nannochloropsis oceanica) CCTCCTCATCCTTGGACGCGACCGGCGCCATAGGCAATGGTGGTAGTATC AATGGCCTCCAGGGACGGAGTGGCCGGTTGCCCTCTTCCTCGCCCTCCCC CTCTTCCTCGTCCTCTCCTACGATAGCCTCGGAGTTCAACCGTTTTGTCA AGAGCTTCGGGGGGACCACAAGCGGTGTTTCCCGTTCCACTCACTCTCCA TCTTCCTCCCGTACTTCGTCCGCCTCTAATGTAAATACACAAATTCATGG CCATCAGGCGAGCAACCATCAGCAGCAGGAGGAGCAGCAGCAGCAGGGAT TTAATAAGGGCGGGAATGACATTTTTACCTCTTCATCGGGAGGAGGGAAG AAGGGAGGAAGAGAAGAACAGGATGACAGTGGCGGTGAAGTTGGTATGTT TATGTAAGCCATGCATCTGCCCAACGGGGCCCTGGTACTGCTCGTAGGTG CAGCGCTCTTTTGCTGCTGCTGCTGTTGCTGTCAGGCATACGTCCCTTCC CCTCTCTTTGGTCCCAAACGGCGTTCCCATCCCTTGCCCGCCTTACGCCA CGCTGCCCGCCCCATTGCCCGCATCGCCCCCTTCCCCCCTCTGCGCTCCA CATTCTCCTCCTTCTTCTCTGAGCGGACAGGTTCAAATAACTCCTCCTCT GCCTCCAACGATAATTTGTCGTATGAACTCCGTTTATTGGAGCTAGAAGG TCGACTTTTGAAATTGGAGGGCTTGACAGCCCGGGCCGCCAAGGCCGGTG GCGGGGGAGGGGGAGGAGGAGGGAGGGGCAGGGCGGGGGGGAATGTAAAA GGTGCAACGGGTATGGGGACGAGTGCTTTCAATCATATTTTACCGGACGG GGAGCAGTTGCTGTTGGGATGTACCTTTGCGGGGGCTGTACTCGGTTTGT TTGTAGGTCGGGCGTTGTTAAACAAGCAGATGTATTTGGGAGGGGTGGGG GGGGCGGTGTTGGGGGTACATTTCTTTAATCAGGATGGAAATTTCGGCGC GGCTATTCGGGCAATGGGAAAGTTGGTGCTGTACGCGTGTGATCGATTGG CCTATGCCTGGTCAGAGGTGAAGTTCAATTGGAAGGCATGGAGGGTTTAT GAGAGGAGTTTTAAAAAATTGGAGAGTTTGGATAGGGAGATGCAGGTGTC TCAGAAGATCAAGGCTTGGGATCAACAATATGGGGTGTCGAATAATGTGA ATGTGTGGTTTAAAAAGTTTCAAACGTCGGCCAAAAACTTGGAAGAAAGT TTGAAGGACCAAGCGATCTACTGGCAGCGGACCCAAAGGCTGCGCGATGA GCAGAGACAGGCACAGATGATTCATCAAGAAGTTCAACGGCAGCAAGAGA GAGAGCGGATGAGGCAGAATGGTGGAGGAGTGGGGGGAGGGTCGTTTAAG TCAGGGAGTGGTGGTATTGCTGAGGAAGGGAGGGAGCAGCAGCAGCAGCA AGAGAAGAAGGGAGGAGGTGAAGGTTTCCATGCAGCGGGTGACCATGAGA ATAGGATCAAGGCTGGCGGGTTCTGGCCATCACATAATGATGAAACTTCT TCCTCTTCCACCTCCAATGCTGTCAAAGCTGTCAAAACAGAGGAAGCACG ACACGCCGTGGCCCGGGCGCATTTTTCTTTCCGTGCCGGTCACGCTCAGC GAGAGGAGCGATGCCGCGTTGAATCACGAGGGCTTACCTTTTTACGCAAC CCACACTCACATAACATGCTATGAACACAAACAGACATACAGCCGAGGAG CCAATAATCCGGACGCTGGTTTTCGAATGGCTCCGCACCGACAAAAGCCT CCTCATCCTTGGACGCGACCGGCGCCATAGGCAATGGTGGTAGTATCAAT GGCCTCCAGGGACGGAGTGGCCGGTTGCCCTCTTCCTCGCCCTCCCCCTC TTCCTCGTCCTCTCCTACGATAGCCTCGGAGTTCAACCGTTTTGTCAAGA GCTTCGGGGGGACCACAAGCGGTGTTTCCCGTTCCACTCACTCTCCATCT TCCTCCCGTACTTCGTCCGCCTCTAATGTAAATACACAAATTCATGGCCA TCAGGCGAGCAACCATCAGCAGCAGGAGGAGCAGCAGCAGCAGGGATTTA ATAAGGGCGGGAATGACATTTTTACCTCTTCATCGGGAGGAGGGAAGAAG GGAGGAAGAGAAGAACAGGATGACAGTGGCGGTGAAGTTGGTATGTTTAT GTAAGCCATGCATCTGCCCAACGGGGCCCTGGTACTGCTCGTAGGTGCAG CGCTCTTTTGCTGCTGCTGCTGTTGCTGTCAGGCATACGTCCCTTCCCCT CTCTTTGGTCCCAAACGGCGTTCCCATCCCTTGCCCGCCTTACGCCACGC TGCCCGCCCCATTGCCCGCATCGCCCCCTTCCCCCCTCTGCGCTCCACAT TCTCCTCCTTCTTCTCTGAGCGGACAGGTTCAAATAACTCCTCCTCTGCC TCCAACGATAATTTGTCGTATGAACTCCGTTTATTGGAGCTAGAAGGTCG ACTTTTGAAATTGGAGGGCTTGACAGCCCGGGCCGCCAAGGCCGGTGGCG GGGGAGGGGGAGGAGGAGGGAGGGGCAGGGCGGGGGGGAATGTAAAAGGT GCAACGGGTATGGGGACGAGTGCTTTCAATCATATTTTACCGGACGGGGA GCAGTTGCTGTTGGGATGTACCTTTGCGGGGGCTGTACTCGGTTTGTTTG TAGGTCGGGCGTTGTTAAACAAGCAGATGTATTTGGGAGGGGTGGGGGGG GCGGTGTTGGGGGTACATTTCTTTAATCAGGATGGAAATTTCGGCGCGGC TATTCGGGCAATGGGAAAGTTGGTGCTGTACGCGTGTGATCGATTGGCCT ATGCCTGGTCAGAGGTGAAGTTCAATTGGAAGGCATGGAGGGTTTATGAG AGGAGTTTTAAAAAATTGGAGAGTTTGGATAGGGAGATGCAGGTGTCTCA GAAGATCAAGGCTTGGGATCAACAATATGGGGTGTCGAATAATGTGAATG TGTGGTTTAAAAAGTTTCAAACGTCGGCCAAAAACTTGGAAGAAAGTTTG AAGGACCAAGCGATCTACTGGCAGCGGACCCAAAGGCTGCGCGATGAGCA GAGACAGGCACAGATGATTCATCAAGAAGTTCAACGGCAGCAAGAGAGAG AGCGGATGAGGCAGAATGGTGGAGGAGTGGGGGGAGGGTCGTTTAAGTCA GGGAGTGGTGGTATTGCTGAGGAAGGGAGGGAGCAGCAGCAGCAGCAAGA GAAGAAGGGAGGAGGTGAAGGTTTCCATGCAGCGGGTGACCATGAGAATA GGATCAAGGCTGGCGGGTTCTGGCCATCACATAATGATGAAACTTCTTCC TCTTCCACCTCCAATGCTGTCAAAGCTGTCAAAACAGAGGAAGCACGACA CGCCGTGGCCCGGGCGCATTTTTCTTTCCGTGCCGGTCACGCTCAGCGAG AGGAGCGATGCCGCGTTGAATCACGAGGGCTTACCTTTTTACGCAACCCA CACTCACATAACATGCTATGAACACAAACAGACATACAGCCGAGGAGCCA ATAATCCGGACGCTGGTTTTCGAATGGCTCCGCACCGACAAAAGCCTCCT CATCCTTGGACGCGACCGGCGCCATAGGCAATGGTGGTAGTATCAATGGC CTCCAGGGACGGAGTGGCCGGTTGCCCTCTTCCTCGCCCTCCCCCTCTTC CTCGTCCTCTCCTACGATAGCCTCGGAGTTCAACCGTTTTGTCAAGAGCT TCGGGGGGACCACAAGCGGTGTTTCCCGTTCCACTCACTCTCCATCTTCC TCCCGTACTTCGTCCGCCTCTAATGTAAATACACAAATTCATGGCCATCA GGCGAGCAACCATCAGCAGCAGGAGGAGCAGCAGCAGCAGGGATTTAATA AGGGCGGGAATGACATTTTTACCTCTTCATCGGGAGGAGGGAAGAAGGGA GGAAGAGAAGAACAGGATGACAGTGGCGGTGAAGTTGGTATGTTTATGTA AGCCATGCATCTGCCCAACGGGGCCCTGGTACTGCTCGTAGGTGCAGCGC TCTTTTGCTGCTGCTGCTGTTGCTGTCAGGCATACGTCCCTTCCCCTCTC TTTGGTCCCAAACGGCGTTCCCATCCCTTGCCCGCCTTACGCCACGCTGC CCGCCCCATTGCCCGCATCGCCCCCTTCCCCCCTCTGCGCTCCACATTCT CCTCCTTCTTCTCTGAGCGGACAGGTTCAAATAACTCCTCCTCTGCCTCC AACGATAATTTGTCGTATGAACTCCGTTTATTGGAGCTAGAAGGTCGACT TTTGAAATTGGAGGGCTTGACAGCCCGGGCCGCCAAGGCCGGTGGCGGGG GAGGGGGAGGAGGAGGGAGGGGCAGGGCGGGGGGGAATGTAAAAGGTGCA ACGGGTATGGGGACGAGTGCTTTCAATCATATTTTACCGGACGGGGAGCA GTTGCTGTTGGGATGTACCTTTGCGGGGGCTGTACTCGGTTTGTTTGTAG GTCGGGCGTTGTTAAACAAGCAGATGTATTTGGGAGGGGTGGGGGGGGCG GTGTTGGGGGTACATTTCTTTAATCAGGATGGAAATTTCGGCGCGGCTAT TCGGGCAATGGGAAAGTTGGTGCTGTACGCGTGTGATCGATTGGCCTATG CCTGGTCAGAGGTGAAGTTCAATTGGAAGGCATGGAGGGTTTATGAGAGG AGTTTTAAAAAATTGGAGAGTTTGGATAGGGAGATGCAGGTGTCTCAGAA GATCAAGGCTTGGGATCAACAATATGGGGTGTCGAATAATGTGAATGTGT GGTTTAAAAAGTTTCAAACGTCGGCCAAAAACTTGGAAGAAAGTTTGAAG GACCAAGCGATCTACTGGCAGCGGACCCAAAGGCTGCGCGATGAGCAGAG ACAGGCACAGATGATTCATCAAGAAGTTCAACGGCAGCAAGAGAGAGAGC GGATGAGGCAGAATGGTGGAGGAGTGGGGGGAGGGTCGTTTAAGTCAGGG AGTGGTGGTATTGCTGAGGAAGGGAGGGAGCAGCAGCAGCAGCAAGAGAA GAAGGGAGGAGGTGAAGGTTTCCATGCAGCGGGTGACCATGAGAATAGGA TCAAGGCTGGCGGGTTCTGGCCATCACATAATGATGAAACTTCTTCCTCT TCCACCTCCAATGCTGTCAAAGCTGTCAAAACAGAGGAAGCACGACACGC CGTGGCCCGGGCGCATTTTTCTTTCCGTGCCGGTCACGCTCAGCGAGAGG AGCGATGCCGCGTTGAATCACGAGGGCTTACCTTTTTACGCAACCCACAC TCACATAACATGCTATGAACACAAACAGACATACAGCCGAGGAGCCAATA ATCCGGACGCTGGTTTTCGAATGGCTCCGCACCGACAAAAG back to top
|