jgi.p|Nanoce1779_2|586588, mRNA_4115 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586588
Unique NamemRNA_4115
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length902
Alignment locationscaffold_8:871989..872890 +

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Properties
Property NameValue
TranscriptId586674
TrackFilteredModels2
ProteinId586588
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:871989..872890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586588gene_4115Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586588mRNA_4115-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4115CDS_4115Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4115 ID=mRNA_4115|Name=jgi.p|Nanoce1779_2|586588|organism=Nannochloropsis oceanica|type=mRNA|length=902bp
ACAGCCCCATACCCAGGCAAATGAAGACTACAGGTATTCCTCCCGACGTC
CAGCCCTACATAGACATGCTGGCAGACCGTTGGCCAGGCCTGGCCCTGTC
GACGGGAGCCTGGACCGTGGTATTTGTGGTGGTGTGCGTGCTGCCCCGGA
TCTCGGACAAGACATTCGACTTCAGGAACCGCGTCGTCTCCATCCTTCAC
GCCATCCTGTCCGCCTACCTGACATTTTTCCTCGTCTTGCTCCAGACCCC
TTGCGACATTGGCGGGCCCAACACTCGCAACCAGATCATAACGCTGAACG
TGAGCGCGGGCTACTTTCTGTACGACTACGCGGCCTGTTCCCTTAACGAC
TTGCGAAACAAGCACTTTGACGCCATGAATTTCTTTCACCACCTCGCAAC
CGTCGCCGGTCTTTTAACAGGGCTAATCACTCAACGCTCAGGCGCCGAAT
TGGGGATGTGTTTGTTTTTAATGGAGGTCTCCAATCCGTTCATGCATATG
ATCCATATTTTCAGGGAGCTCGGGTATAATGACTCGCCGGTCGCGGAGGC
GAATAAGGCATTGTTTGCGATCATTTTCACATTTGCACGCATTGTTGCGG
GCCCGGTGTTGACTTACTATTCGATGATTTGCCCGAGGACGCACTGGGTG
ATTAAGGTCGGGGCATGTGGGATCTTGCTGGTGAGTTTGTTGTGGTTTTC
CAAGATCGTGGCGATGTTGGGTAAGGTCTTTGGAGGGGGCAAGAAGGGAG
GAGACAGAGGGATGAATGGAGAGAAGAAGCGGAAGTAGATTCGAGAGATC
TTGGAAGGGGGGATCGGTGCATTCGGACATATGGGAAGCTGTTGCAGGAG
AAAACACAAAAAGTTAATTTAAATGCATGCCCCCATGGGAGAATTATGAA
AA
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protein sequence of jgi.p|Nanoce1779_2|586588

>mRNA_4115-protein ID=mRNA_4115-protein|Name=jgi.p|Nanoce1779_2|586588|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MKTTGIPPDVQPYIDMLADRWPGLALSTGAWTVVFVVVCVLPRISDKTFD
FRNRVVSILHAILSAYLTFFLVLLQTPCDIGGPNTRNQIITLNVSAGYFL
YDYAACSLNDLRNKHFDAMNFFHHLATVAGLLTGLITQRSGAELGMCLFL
MEVSNPFMHMIHIFRELGYNDSPVAEANKALFAIIFTFARIVAGPVLTYY
SMICPRTHWVIKVGACGILLVSLLWFSKIVAMLGKVFGGGKKGGDRGMNG
EKKRK*
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mRNA from alignment at scaffold_8:871989..872890+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4115 ID=mRNA_4115|Name=jgi.p|Nanoce1779_2|586588|organism=Nannochloropsis oceanica|type=mRNA|length=902bp|location=Sequence derived from alignment at scaffold_8:871989..872890+ (Nannochloropsis oceanica)
ACAGCCCCATACCCAGGCAAATGAAGACTACAGGTATTCCTCCCGACGTC
CAGCCCTACATAGACATGCTGGCAGACCGTTGGCCAGGCCTGGCCCTGTC
GACGGGAGCCTGGACCGTGGTATTTGTGGTGGTGTGCGTGCTGCCCCGGA
TCTCGGACAAGACATTCGACTTCAGGAACCGCGTCGTCTCCATCCTTCAC
GCCATCCTGTCCGCCTACCTGACATTTTTCCTCGTCTTGCTCCAGACCCC
TTGCGACATTGGCGGGCCCAACACTCGCAACCAGATCATAACGCTGAACG
TGAGCGCGGGCTACTTTCTGTACGACTACGCGGCCTGTTCCCTTAACGAC
TTGCGAAACAAGCACTTTGACGCCATGAATTTCTTTCACCACCTCGCAAC
CGTCGCCGGTCTTTTAACAGGGCTAATCACTCAACGCTCAGGCGCCGAAT
TGGGGATGTGTTTGTTTTTAATGGAGGTCTCCAATCCGTTCATGCATATG
ATCCATATTTTCAGGGAGCTCGGGTATAATGACTCGCCGGTCGCGGAGGC
GAATAAGGCATTGTTTGCGATCATTTTCACATTTGCACGCATTGTTGCGG
GCCCGGTGTTGACTTACTATTCGATGATTTGCCCGAGGACGCACTGGGTG
ATTAAGGTCGGGGCATGTGGGATCTTGCTGGTGAGTTTGTTGTGGTTTTC
CAAGATCGTGGCGATGTTGGGTAAGGTCTTTGGAGGGGGCAAGAAGGGAG
GAGACAGAGGGATGAATGGAGAGAAGAAGCGGAAGTAGATTCGAGAGATC
TTGGAAGGGGGGATCGGTGCATTCGGACATATGGGAAGCTGTTGCAGGAG
AAAACACAAAAAGTTAATTTAAATGCATGCCCCCATGGGAGAATTATGAA
AA
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Coding sequence (CDS) from alignment at scaffold_8:871989..872890+

>mRNA_4115 ID=mRNA_4115|Name=jgi.p|Nanoce1779_2|586588|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at scaffold_8:871989..872890+ (Nannochloropsis oceanica)
ATGAAGACTACAGGTATTCCTCCCGACGTCCAGCCCTACATAGACATGCT
GGCAGACCGTTGGCCAGGCCTGGCCCTGTCGACGGGAGCCTGGACCGTGG
TATTTGTGGTGGTGTGCGTGCTGCCCCGGATCTCGGACAAGACATTCGAC
TTCAGGAACCGCGTCGTCTCCATCCTTCACGCCATCCTGTCCGCCTACCT
GACATTTTTCCTCGTCTTGCTCCAGACCCCTTGCGACATTGGCGGGCCCA
ACACTCGCAACCAGATCATAACGCTGAACGTGAGCGCGGGCTACTTTCTG
TACGACTACGCGGCCTGTTCCCTTAACGACTTGCGAAACAAGCACTTTGA
CGCCATGAATTTCTTTCACCACCTCGCAACCGTCGCCGGTCTTTTAACAG
GGCTAATCACTCAACGCTCAGGCGCCGAATTGGGGATGTGTTTGTTTTTA
ATGGAGGTCTCCAATCCGTTCATGCATATGATCCATATTTTCAGGGAGCT
CGGGTATAATGACTCGCCGGTCGCGGAGGCGAATAAGGCATTGTTTGCGA
TCATTTTCACATTTGCACGCATTGTTGCGGGCCCGGTGTTGACTTACTAT
TCGATGATTTGCCCGAGGACGCACTGGGTGATTAAGGTCGGGGCATGTGG
GATCTTGCTGGTGAGTTTGTTGTGGTTTTCCAAGATCGTGGCGATGTTGG
GTAAGGTCTTTGGAGGGGGCAAGAAGGGAGGAGACAGAGGGATGAATGGA
GAGAAGAAGCGGAAGTAG
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Synonyms
Publications