jgi.p|Nanoce1779_2|565312, mRNA_4112 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|565312
Unique NamemRNA_4112
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length399
Alignment locationscaffold_8:866714..867112 +

Link to JBrowse

Properties
Property NameValue
TranscriptId565398
TrackFilteredModels2
ProteinId565312
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:866714..867112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565312gene_4112Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565312mRNA_4112-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4112CDS_4112Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4112 ID=mRNA_4112|Name=jgi.p|Nanoce1779_2|565312|organism=Nannochloropsis oceanica|type=mRNA|length=399bp
ATGCCCGCCGAATACGCCAAGCAAACTGCCCATGTGACACGGCGTTTGTT
CATCACCACGGACCTCCCAGAGGACGACCCCTCGTTTTCACTTGACTTCT
ACCCTGCTGGGCAAGGGCCAGGCATGAATGCCTTTGGGAAAGGCAATGCT
AAAATGGACACGATTTTATTGTTCCAAGCCAACCCGGGGGATACGTGTGG
AAATAAAATAAGTCAGGTGTGGATTGCCCCCGATAGGGAGGGGGTGGCCT
CGAGGGGGAGGGAGGGAGGGAGGGTGACGGAGGAGGACGTGGTCAAGAGT
AAGGTGTTCAGGCAGGTGCTGGAAGTGGTGCAGGGGAAGGTGAAGGGGGA
GTTGAGGTTTTATATGCACGACTACGTGTTCATGGACACGATCGGATAG
back to top

protein sequence of jgi.p|Nanoce1779_2|565312

>mRNA_4112-protein ID=mRNA_4112-protein|Name=jgi.p|Nanoce1779_2|565312|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MPAEYAKQTAHVTRRLFITTDLPEDDPSFSLDFYPAGQGPGMNAFGKGNA
KMDTILLFQANPGDTCGNKISQVWIAPDREGVASRGREGGRVTEEDVVKS
KVFRQVLEVVQGKVKGELRFYMHDYVFMDTIG*
back to top

mRNA from alignment at scaffold_8:866714..867112+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4112 ID=mRNA_4112|Name=jgi.p|Nanoce1779_2|565312|organism=Nannochloropsis oceanica|type=mRNA|length=399bp|location=Sequence derived from alignment at scaffold_8:866714..867112+ (Nannochloropsis oceanica)
ATGCCCGCCGAATACGCCAAGCAAACTGCCCATGTGACACGGCGTTTGTT
CATCACCACGGACCTCCCAGAGGACGACCCCTCGTTTTCACTTGACTTCT
ACCCTGCTGGGCAAGGGCCAGGCATGAATGCCTTTGGGAAAGGCAATGCT
AAAATGGACACGATTTTATTGTTCCAAGCCAACCCGGGGGATACGTGTGG
AAATAAAATAAGTCAGGTGTGGATTGCCCCCGATAGGGAGGGGGTGGCCT
CGAGGGGGAGGGAGGGAGGGAGGGTGACGGAGGAGGACGTGGTCAAGAGT
AAGGTGTTCAGGCAGGTGCTGGAAGTGGTGCAGGGGAAGGTGAAGGGGGA
GTTGAGGTTTTATATGCACGACTACGTGTTCATGGACACGATCGGATAG
back to top

Coding sequence (CDS) from alignment at scaffold_8:866714..867112+

>mRNA_4112 ID=mRNA_4112|Name=jgi.p|Nanoce1779_2|565312|organism=Nannochloropsis oceanica|type=CDS|length=399bp|location=Sequence derived from alignment at scaffold_8:866714..867112+ (Nannochloropsis oceanica)
ATGCCCGCCGAATACGCCAAGCAAACTGCCCATGTGACACGGCGTTTGTT
CATCACCACGGACCTCCCAGAGGACGACCCCTCGTTTTCACTTGACTTCT
ACCCTGCTGGGCAAGGGCCAGGCATGAATGCCTTTGGGAAAGGCAATGCT
AAAATGGACACGATTTTATTGTTCCAAGCCAACCCGGGGGATACGTGTGG
AAATAAAATAAGTCAGGTGTGGATTGCCCCCGATAGGGAGGGGGTGGCCT
CGAGGGGGAGGGAGGGAGGGAGGGTGACGGAGGAGGACGTGGTCAAGAGT
AAGGTGTTCAGGCAGGTGCTGGAAGTGGTGCAGGGGAAGGTGAAGGGGGA
GTTGAGGTTTTATATGCACGACTACGTGTTCATGGACACGATCGGATAG
back to top
Synonyms
Publications