jgi.p|Nanoce1779_2|586574, mRNA_4110 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586574
Unique Name	mRNA_4110
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1011
Alignment location	scaffold_8:863917..864927 +

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Properties


Property Name	Value
TranscriptId	586660
Track	FilteredModels2
ProteinId	586574

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:863917..864927 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586574	gene_4110	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586574	mRNA_4110-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4110	CDS_4110	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:863917..864927+
coding sequence from alignment at scaffold_8:863917..864927+

mRNA sequence

>mRNA_4110 ID=mRNA_4110|Name=jgi.p|Nanoce1779_2|586574|organism=Nannochloropsis oceanica|type=mRNA|length=1011bp
TCTTCCTCCTCTCCTTCTTCCTCTTCCTCCTCTCCTTCTTCCTCTTCCTC
CTCCCCTCTTTTGTCCATGCGAAGCTGCCACCCGTCGCTGAACAAGGCCG
CTCTTCGCGCGGGCGTCGTGTGCTGCGACTGCAGCTGCCACTGTGGCTGC
TGCTGCCGCTGCACCGGGAAGGAAGAAGCAGAAGATATCATCGACGCAGA
CGCTGGTTCCGCAGCGATCATAACAGGAAATGCCATAGCCCCAAGTGCTT
GTACATCGTCTGAATGCATCCCTTTCAATAGATGAGGCACATGCGACACT
CTGCGTCGCATGACCGCCAAAACCCGCCGCAAATGACTGTGAGGGCCCAT
TCTGATAAGCATTTGGACGTACACCTCCCCTACATGCGGTCCTTCTCTCG
TTTCTCCTCCTCCTGCTGTTGCTGCCATACGTAAATACATGGGTATTCTC
CGCAATTTCATGGCAGCGCGTTGGTGGAGGCCATGTTCGTTTAAGGGTAG
GTAAGCGAGGGCGTAGGGTCGGCCAGTGGCGAGGTCTTCGATGTGGAGAG
TGAGGCGGTTTGTGTCGTGAAGGTACTGCCAGACGGCGCCTTCTTCCTCA
ACGCGGACGGGATATAGGCAAGTATTTTGGCGAGTGTGGGACGGCTTTAG
GCTGCTGCTGCTCTTGTCGGTGCGCTTAGGCTCGAAGCACGTCCCTTTCC
CACTTTCCCCCCACCATTTGATCCGCACGCGGACCTGCGGTGGAGGTGGT
GGCTGAGGCGCCAGCGACATGGTCGCACTCACACTGACCTTGTTATTGGC
CTCTTGGAAATGTATGAGAGGAACGAAGAGCTGCAATTCCCCGAGGATGG
CAGCCGAGGTCATTGGGGGCAGTGAAGGCCCGAGACGATGGAGGAGGCGG
GCCGCATGCCTGGCTTCGGCCGCGGGGAAGTACTGGTCCTCGTTGGAAGA
CCGCGACAACGACAACGGTGGCAACATTTCCTGGCCTGTCGAGAGTGTTT
TTATGCCCTGT

protein sequence of jgi.p|Nanoce1779_2|586574

>mRNA_4110-protein ID=mRNA_4110-protein|Name=jgi.p|Nanoce1779_2|586574|organism=Nannochloropsis oceanica|type=polypeptide|length=81bp
MVALTLTLLLASWKCMRGTKSCNSPRMAAEVIGGSEGPRRWRRRAACLAS
AAGKYWSSLEDRDNDNGGNISWPVESVFMPC

mRNA from alignment at scaffold_8:863917..864927+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4110 ID=mRNA_4110|Name=jgi.p|Nanoce1779_2|586574|organism=Nannochloropsis oceanica|type=mRNA|length=1011bp|location=Sequence derived from alignment at scaffold_8:863917..864927+ (Nannochloropsis oceanica)
TCTTCCTCCTCTCCTTCTTCCTCTTCCTCCTCTCCTTCTTCCTCTTCCTC
CTCCCCTCTTTTGTCCATGCGAAGCTGCCACCCGTCGCTGAACAAGGCCG
CTCTTCGCGCGGGCGTCGTGTGCTGCGACTGCAGCTGCCACTGTGGCTGC
TGCTGCCGCTGCACCGGGAAGGAAGAAGCAGAAGATATCATCGACGCAGA
CGCTGGTTCCGCAGCGATCATAACAGGAAATGCCATAGCCCCAAGTGCTT
GTACATCGTCTGAATGCATCCCTTTCAATAGATGAGGCACATGCGACACT
CTGCGTCGCATGACCGCCAAAACCCGCCGCAAATGACTGTGAGGGCCCAT
TCTGATAAGCATTTGGACGTACACCTCCCCTACATGCGGTCCTTCTCTCG
TTTCTCCTCCTCCTGCTGTTGCTGCCATACGTAAATACATGGGTATTCTC
CGCAATTTCATGGCAGCGCGTTGGTGGAGGCCATGTTCGTTTAAGGGTAG
GTAAGCGAGGGCGTAGGGTCGGCCAGTGGCGAGGTCTTCGATGTGGAGAG
TGAGGCGGTTTGTGTCGTGAAGGTACTGCCAGACGGCGCCTTCTTCCTCA
ACGCGGACGGGATATAGGCAAGTATTTTGGCGAGTGTGGGACGGCTTTAG
GCTGCTGCTGCTCTTGTCGGTGCGCTTAGGCTCGAAGCACGTCCCTTTCC
CACTTTCCCCCCACCATTTGATCCGCACGCGGACCTGCGGTGGAGGTGGT
GGCTGAGGCGCCAGCGACATGGTCGCACTCACACTGACCTTGTTATTGGC
CTCTTGGAAATGTATGAGAGGAACGAAGAGCTGCAATTCCCCGAGGATGG
CAGCCGAGGTCATTGGGGGCAGTGAAGGCCCGAGACGATGGAGGAGGCGG
GCCGCATGCCTGGCTTCGGCCGCGGGGAAGTACTGGTCCTCGTTGGAAGA
CCGCGACAACGACAACGGTGGCAACATTTCCTGGCCTGTCGAGAGTGTTT
TTATGCCCTGT

Coding sequence (CDS) from alignment at scaffold_8:863917..864927+

>mRNA_4110 ID=mRNA_4110|Name=jgi.p|Nanoce1779_2|586574|organism=Nannochloropsis oceanica|type=CDS|length=243bp|location=Sequence derived from alignment at scaffold_8:863917..864927+ (Nannochloropsis oceanica)
ATGGTCGCACTCACACTGACCTTGTTATTGGCCTCTTGGAAATGTATGAG
AGGAACGAAGAGCTGCAATTCCCCGAGGATGGCAGCCGAGGTCATTGGGG
GCAGTGAAGGCCCGAGACGATGGAGGAGGCGGGCCGCATGCCTGGCTTCG
GCCGCGGGGAAGTACTGGTCCTCGTTGGAAGACCGCGACAACGACAACGG
TGGCAACATTTCCTGGCCTGTCGAGAGTGTTTTTATGCCCTGT

Synonyms

Publications