jgi.p|Nanoce1779_2|241832, mRNA_411 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|241832
Unique Name	mRNA_411
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2431
Alignment location	scaffold_3:1016487..1018917 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	241918
Track	FilteredModels2
ProteinId	241832

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1016487..1018917 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|241832	gene_411	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|241832	mRNA_411-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_411	CDS_411	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1016487..1018917+
coding sequence from alignment at scaffold_3:1016487..1018917+

mRNA sequence

>mRNA_411 ID=mRNA_411|Name=jgi.p|Nanoce1779_2|241832|organism=Nannochloropsis oceanica|type=mRNA|length=2431bp
CAAAGTTGTAGTATGGTTAGGTGAAGAGGGAGGGTGGAGAAGGTGCAGGG
CAGCGTGACGGGTAAGATGGAGGAAGAAGCAAATAATGCGGCCAAGCATG
TATCTAGACTGCTAGGTGACGGTGGGGGTTGCTTTGTGCGGAGAAGATAG
ACGCTGCTGTTATGGTAAAGATGGTAAGCTGCCCACAGAAGAAGCACCAG
ACAGGCACCGCAGAAAAGCAACGCGACGCTTAACGATACGCCCTTGTCAT
CTCGTGCTTTCGTCTGCGCTGAGCGTACGATGCTTCACAATAACACTTCC
ACTTCTCCACACTCAAGTACCAAAACCAACCACCTCTCCCTTCCCCCTAT
ACCCAACCAACAGCCACCGCCAGCACAAGCAGCGCGAGCGCCATCAGCTC
GCGGCCCAAGTGTCCCTACCTCGACACCGTCAATCGCTCCTACCTCGATT
TCGACTTCGAAAAAGTGTGCTCTATCTCCCTATCAAACATGAATATTTAT
GCCTGCCTTGTCTGCGGAAAGTTTTTTCAAGGCCGTGGCCCTCGCACACA
AGCGCATACCCACTCCGTCCAAGCCTTCCACCACGTATTTATGAATCTGC
ACAACGCCCGCATTTACTGCTTACCCGACAATTATGAGGTGTTGGACTCG
TCGCTGGATGATATCAAACGGGCCTTGTTTCCTTCCTTTCCTCCCTCGGA
CATCGCCCGCTTGGACAGCAATACCACCCTGGTAAGGGACGTTCATGGCG
TGTCCTTCCTACCCGGATTTATTGGATTGAACAATTTGAAAAACACGGAT
TACGTCAACGTAGTCCTTCAAGCCCTTGCCCACATCGTCCCTCTTCGGGA
TTTTTTCCTTCAACCCTCTCTGTACCAAGACGGCGTCGGCGGCGAAGCAA
TAGCAGCAACAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGACGAAAGCC
CACTTCCAACTCGTGTTGCTATTTGGGGAGGTCATGAGGAAGTTGTGGAG
TAAGTATAATTTCAAGAGTACGGTGTCCCCACACGATTTCCTCCAGGAGG
TGGTGGGCGCGAGTGGCAAGAGATTCAAGATCGGGAAGCAGGGGGAGGCG
GCTGAGTTCTTGTCGTGGTTGCTCCACCACTTACACGTGGGGTTGGTGGG
GAGAGAGGGAAAGAAGAAGGGGAACAAGGGAGGTAGTAGCGTGATTTTGG
AGTGCCTCCAGGGCGAAATAAAAGTGATGACGCAGACGAAAGTGAAAAAG
ATATTGACCTTGGGAGGGGGGAAGGCAGGGAGAGAGGACGAGGAGGATGA
TGGAACGGGGCGGAATGTCGGCCGAGGAGGGGAGGATGATGTAGCCGAGA
TAGGGGAAGGAGAGTGGGTGGAGACTGTGGCAAAGGCGCCGTTTTTATTT
TTGACGGTTAACATACCTCAGACCCCTTTGTTCAAGGACTCGCAGGGGGG
GGTGATCATCCCGCAGGTCCCTCTTTACAGTGTGTTAGAAAAGTTCAACG
GGAGAAAAGTAGTGGATGTTGTGAAAGGAGGGGTTCACACGCGGAAGAAA
TATTGGATCACACGCCTCCCACGATACCTGATCCTGAGCTTGGCCCGATT
GACACGGAACCATTTTTTCGTGGAAAAAAACCCGACGATTGTGAATTTTC
CCGTTAAGAATTTGGAGATGAAGGATTATTTTTTCCCGGACGAGGGCGGG
GAGGAGGGAGGGAAGGGAGGATTGCCTACGGAGGAGGAATTGGCCGTGAT
GAGCGTAGGGGAGTTGAAGGCTTTTGTGCTGGCGCATGGGGGGGGAGGGG
CCGCAGGGCAGGTGAGGGGTGCGGTAGAGAAAGCGGAATTGGTAGAAATT
GCGCGAAGGGTTTTACTAGAGATCGGAGGGACGAAATATGACCTTGTTGC
GAATGTGGTGCATGATTCCCCGCCGGGACAGGAGAAAAAGGAGGCGACTT
CTCGAGGGGAGGATTCTGGAGTGCCACAGGGGACATATAGGGTGCATGTC
TTTAACCGGGCTTCGGATCAGTGGTATGAGATCCAAGATTTGCACGTTCA
GGAGACGCTGCCTCAATTGATTACGATTAGTGAGAGTTGTTTATTGATTT
ATGAGAAGAAGGGGTTGGTGCATGACTGGCAGGCGACCAGAGAGGTGGCG
AGTTCGGTGGCAGCGGCCACGGCGGGAAAGGGCGGACAGTGAGGAGGAGG
GATCTGGAAATGAAGGTGATGGAACTGCTGGTATATGAGTTGAGAGGGAG
AGGCGTGTTCAAATTGGTAAATAAGGCGCGTGTGCGCAGGCAGCGACCAT
ACAGAGAGGGATGACAGGGGTGGAAGGAAAGGTTTGAGGGTTGGTAGGTG
TAATAATAGGGGAACAGAGAGGGATGAAAGAGAGGGAGAAGACGACAAGA
ATCAAATGCAAAGAAATACAAAGCGTCAATA

protein sequence of jgi.p|Nanoce1779_2|241832

>mRNA_411-protein ID=mRNA_411-protein|Name=jgi.p|Nanoce1779_2|241832|organism=Nannochloropsis oceanica|type=polypeptide|length=568bp
MNIYACLVCGKFFQGRGPRTQAHTHSVQAFHHVFMNLHNARIYCLPDNYE
VLDSSLDDIKRALFPSFPPSDIARLDSNTTLVRDVHGVSFLPGFIGLNNL
KNTDYVNVVLQALAHIVPLRDFFLQPSLYQDGVGGEAIAATGGGGGGGGG
GTKAHFQLVLLFGEVMRKLWSKYNFKSTVSPHDFLQEVVGASGKRFKIGK
QGEAAEFLSWLLHHLHVGLVGREGKKKGNKGGSSVILECLQGEIKVMTQT
KVKKILTLGGGKAGREDEEDDGTGRNVGRGGEDDVAEIGEGEWVETVAKA
PFLFLTVNIPQTPLFKDSQGGVIIPQVPLYSVLEKFNGRKVVDVVKGGVH
TRKKYWITRLPRYLILSLARLTRNHFFVEKNPTIVNFPVKNLEMKDYFFP
DEGGEEGGKGGLPTEEELAVMSVGELKAFVLAHGGGGAAGQVRGAVEKAE
LVEIARRVLLEIGGTKYDLVANVVHDSPPGQEKKEATSRGEDSGVPQGTY
RVHVFNRASDQWYEIQDLHVQETLPQLITISESCLLIYEKKGLVHDWQAT
REVASSVAAATAGKGGQ*

mRNA from alignment at scaffold_3:1016487..1018917+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_411 ID=mRNA_411|Name=jgi.p|Nanoce1779_2|241832|organism=Nannochloropsis oceanica|type=mRNA|length=2431bp|location=Sequence derived from alignment at scaffold_3:1016487..1018917+ (Nannochloropsis oceanica)
CAAAGTTGTAGTATGGTTAGGTGAAGAGGGAGGGTGGAGAAGGTGCAGGG
CAGCGTGACGGGTAAGATGGAGGAAGAAGCAAATAATGCGGCCAAGCATG
TATCTAGACTGCTAGGTGACGGTGGGGGTTGCTTTGTGCGGAGAAGATAG
ACGCTGCTGTTATGGTAAAGATGGTAAGCTGCCCACAGAAGAAGCACCAG
ACAGGCACCGCAGAAAAGCAACGCGACGCTTAACGATACGCCCTTGTCAT
CTCGTGCTTTCGTCTGCGCTGAGCGTACGATGCTTCACAATAACACTTCC
ACTTCTCCACACTCAAGTACCAAAACCAACCACCTCTCCCTTCCCCCTAT
ACCCAACCAACAGCCACCGCCAGCACAAGCAGCGCGAGCGCCATCAGCTC
GCGGCCCAAGTGTCCCTACCTCGACACCGTCAATCGCTCCTACCTCGATT
TCGACTTCGAAAAAGTGTGCTCTATCTCCCTATCAAACATGAATATTTAT
GCCTGCCTTGTCTGCGGAAAGTTTTTTCAAGGCCGTGGCCCTCGCACACA
AGCGCATACCCACTCCGTCCAAGCCTTCCACCACGTATTTATGAATCTGC
ACAACGCCCGCATTTACTGCTTACCCGACAATTATGAGGTGTTGGACTCG
TCGCTGGATGATATCAAACGGGCCTTGTTTCCTTCCTTTCCTCCCTCGGA
CATCGCCCGCTTGGACAGCAATACCACCCTGGTAAGGGACGTTCATGGCG
TGTCCTTCCTACCCGGATTTATTGGATTGAACAATTTGAAAAACACGGAT
TACGTCAACGTAGTCCTTCAAGCCCTTGCCCACATCGTCCCTCTTCGGGA
TTTTTTCCTTCAACCCTCTCTGTACCAAGACGGCGTCGGCGGCGAAGCAA
TAGCAGCAACAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGACGAAAGCC
CACTTCCAACTCGTGTTGCTATTTGGGGAGGTCATGAGGAAGTTGTGGAG
TAAGTATAATTTCAAGAGTACGGTGTCCCCACACGATTTCCTCCAGGAGG
TGGTGGGCGCGAGTGGCAAGAGATTCAAGATCGGGAAGCAGGGGGAGGCG
GCTGAGTTCTTGTCGTGGTTGCTCCACCACTTACACGTGGGGTTGGTGGG
GAGAGAGGGAAAGAAGAAGGGGAACAAGGGAGGTAGTAGCGTGATTTTGG
AGTGCCTCCAGGGCGAAATAAAAGTGATGACGCAGACGAAAGTGAAAAAG
ATATTGACCTTGGGAGGGGGGAAGGCAGGGAGAGAGGACGAGGAGGATGA
TGGAACGGGGCGGAATGTCGGCCGAGGAGGGGAGGATGATGTAGCCGAGA
TAGGGGAAGGAGAGTGGGTGGAGACTGTGGCAAAGGCGCCGTTTTTATTT
TTGACGGTTAACATACCTCAGACCCCTTTGTTCAAGGACTCGCAGGGGGG
GGTGATCATCCCGCAGGTCCCTCTTTACAGTGTGTTAGAAAAGTTCAACG
GGAGAAAAGTAGTGGATGTTGTGAAAGGAGGGGTTCACACGCGGAAGAAA
TATTGGATCACACGCCTCCCACGATACCTGATCCTGAGCTTGGCCCGATT
GACACGGAACCATTTTTTCGTGGAAAAAAACCCGACGATTGTGAATTTTC
CCGTTAAGAATTTGGAGATGAAGGATTATTTTTTCCCGGACGAGGGCGGG
GAGGAGGGAGGGAAGGGAGGATTGCCTACGGAGGAGGAATTGGCCGTGAT
GAGCGTAGGGGAGTTGAAGGCTTTTGTGCTGGCGCATGGGGGGGGAGGGG
CCGCAGGGCAGGTGAGGGGTGCGGTAGAGAAAGCGGAATTGGTAGAAATT
GCGCGAAGGGTTTTACTAGAGATCGGAGGGACGAAATATGACCTTGTTGC
GAATGTGGTGCATGATTCCCCGCCGGGACAGGAGAAAAAGGAGGCGACTT
CTCGAGGGGAGGATTCTGGAGTGCCACAGGGGACATATAGGGTGCATGTC
TTTAACCGGGCTTCGGATCAGTGGTATGAGATCCAAGATTTGCACGTTCA
GGAGACGCTGCCTCAATTGATTACGATTAGTGAGAGTTGTTTATTGATTT
ATGAGAAGAAGGGGTTGGTGCATGACTGGCAGGCGACCAGAGAGGTGGCG
AGTTCGGTGGCAGCGGCCACGGCGGGAAAGGGCGGACAGTGAGGAGGAGG
GATCTGGAAATGAAGGTGATGGAACTGCTGGTATATGAGTTGAGAGGGAG
AGGCGTGTTCAAATTGGTAAATAAGGCGCGTGTGCGCAGGCAGCGACCAT
ACAGAGAGGGATGACAGGGGTGGAAGGAAAGGTTTGAGGGTTGGTAGGTG
TAATAATAGGGGAACAGAGAGGGATGAAAGAGAGGGAGAAGACGACAAGA
ATCAAATGCAAAGAAATACAAAGCGTCAATA

Coding sequence (CDS) from alignment at scaffold_3:1016487..1018917+

>mRNA_411 ID=mRNA_411|Name=jgi.p|Nanoce1779_2|241832|organism=Nannochloropsis oceanica|type=CDS|length=1704bp|location=Sequence derived from alignment at scaffold_3:1016487..1018917+ (Nannochloropsis oceanica)
ATGAATATTTATGCCTGCCTTGTCTGCGGAAAGTTTTTTCAAGGCCGTGG
CCCTCGCACACAAGCGCATACCCACTCCGTCCAAGCCTTCCACCACGTAT
TTATGAATCTGCACAACGCCCGCATTTACTGCTTACCCGACAATTATGAG
GTGTTGGACTCGTCGCTGGATGATATCAAACGGGCCTTGTTTCCTTCCTT
TCCTCCCTCGGACATCGCCCGCTTGGACAGCAATACCACCCTGGTAAGGG
ACGTTCATGGCGTGTCCTTCCTACCCGGATTTATTGGATTGAACAATTTG
AAAAACACGGATTACGTCAACGTAGTCCTTCAAGCCCTTGCCCACATCGT
CCCTCTTCGGGATTTTTTCCTTCAACCCTCTCTGTACCAAGACGGCGTCG
GCGGCGAAGCAATAGCAGCAACAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGGACGAAAGCCCACTTCCAACTCGTGTTGCTATTTGGGGAGGTCATGAG
GAAGTTGTGGAGTAAGTATAATTTCAAGAGTACGGTGTCCCCACACGATT
TCCTCCAGGAGGTGGTGGGCGCGAGTGGCAAGAGATTCAAGATCGGGAAG
CAGGGGGAGGCGGCTGAGTTCTTGTCGTGGTTGCTCCACCACTTACACGT
GGGGTTGGTGGGGAGAGAGGGAAAGAAGAAGGGGAACAAGGGAGGTAGTA
GCGTGATTTTGGAGTGCCTCCAGGGCGAAATAAAAGTGATGACGCAGACG
AAAGTGAAAAAGATATTGACCTTGGGAGGGGGGAAGGCAGGGAGAGAGGA
CGAGGAGGATGATGGAACGGGGCGGAATGTCGGCCGAGGAGGGGAGGATG
ATGTAGCCGAGATAGGGGAAGGAGAGTGGGTGGAGACTGTGGCAAAGGCG
CCGTTTTTATTTTTGACGGTTAACATACCTCAGACCCCTTTGTTCAAGGA
CTCGCAGGGGGGGGTGATCATCCCGCAGGTCCCTCTTTACAGTGTGTTAG
AAAAGTTCAACGGGAGAAAAGTAGTGGATGTTGTGAAAGGAGGGGTTCAC
ACGCGGAAGAAATATTGGATCACACGCCTCCCACGATACCTGATCCTGAG
CTTGGCCCGATTGACACGGAACCATTTTTTCGTGGAAAAAAACCCGACGA
TTGTGAATTTTCCCGTTAAGAATTTGGAGATGAAGGATTATTTTTTCCCG
GACGAGGGCGGGGAGGAGGGAGGGAAGGGAGGATTGCCTACGGAGGAGGA
ATTGGCCGTGATGAGCGTAGGGGAGTTGAAGGCTTTTGTGCTGGCGCATG
GGGGGGGAGGGGCCGCAGGGCAGGTGAGGGGTGCGGTAGAGAAAGCGGAA
TTGGTAGAAATTGCGCGAAGGGTTTTACTAGAGATCGGAGGGACGAAATA
TGACCTTGTTGCGAATGTGGTGCATGATTCCCCGCCGGGACAGGAGAAAA
AGGAGGCGACTTCTCGAGGGGAGGATTCTGGAGTGCCACAGGGGACATAT
AGGGTGCATGTCTTTAACCGGGCTTCGGATCAGTGGTATGAGATCCAAGA
TTTGCACGTTCAGGAGACGCTGCCTCAATTGATTACGATTAGTGAGAGTT
GTTTATTGATTTATGAGAAGAAGGGGTTGGTGCATGACTGGCAGGCGACC
AGAGAGGTGGCGAGTTCGGTGGCAGCGGCCACGGCGGGAAAGGGCGGACA
GTGA

Synonyms

Publications